Wall clock time and date at job start Wed Apr 1 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47069 * 126.30158 * 2 1 4 4 C 1.54062 * 110.10915 * 150.93459 * 3 2 1 5 5 C 1.55603 * 104.29703 * 45.19897 * 4 3 2 6 6 H 1.09000 * 111.19911 * 79.96498 * 5 4 3 7 7 C 1.50700 * 111.17139 * 204.21732 * 5 4 3 8 8 O 1.21285 * 119.99580 * 27.79293 * 7 5 4 9 9 N 1.34771 * 120.00209 * 207.79712 * 7 5 4 10 10 C 1.47346 * 125.52885 * 359.68693 * 9 7 5 11 11 C 1.54939 * 104.89451 * 156.80835 * 10 9 7 12 12 C 1.54805 * 101.49633 * 37.23764 * 11 10 9 13 13 H 1.09002 * 113.15298 * 85.61292 * 12 11 10 14 14 C 1.53263 * 109.74729 * 212.29199 * 12 11 10 15 15 N 1.46581 * 108.15966 * 95.75998 * 14 12 11 16 16 C 1.36943 * 125.30634 * 177.89343 * 15 14 12 17 17 H 1.08003 * 119.99523 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99876 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00480 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 59.99731 * 20 18 16 22 22 H 1.48504 * 109.47336 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47155 * 300.00028 * 20 18 16 24 24 C 1.46600 * 109.39026 * 357.88726 * 15 14 12 25 25 C 1.47216 * 125.53088 * 179.97438 * 9 7 5 26 26 H 1.08997 * 112.28361 * 55.97280 * 25 9 7 27 27 S 1.67002 * 126.30376 * 179.97438 * 2 1 3 28 28 O 1.42100 * 105.13231 * 68.63355 * 27 2 1 29 29 O 1.42102 * 105.13386 * 298.96736 * 27 2 1 30 30 H 1.09000 * 109.47111 * 270.04008 * 1 2 3 31 31 H 1.08995 * 109.47378 * 30.04224 * 1 2 3 32 32 H 1.08997 * 109.47001 * 150.04120 * 1 2 3 33 33 H 1.09002 * 109.35668 * 271.11457 * 3 2 1 34 34 H 1.09001 * 109.35561 * 30.82329 * 3 2 1 35 35 H 1.09009 * 110.46630 * 286.49786 * 4 3 2 36 36 H 1.08994 * 110.46638 * 163.90633 * 4 3 2 37 37 H 1.08995 * 110.35988 * 275.66463 * 10 9 7 38 38 H 1.09002 * 110.35735 * 37.96196 * 10 9 7 39 39 H 1.09000 * 111.02557 * 279.18421 * 11 10 9 40 40 H 1.09005 * 111.01936 * 155.28688 * 11 10 9 41 41 H 1.08998 * 109.73640 * 215.45014 * 14 12 11 42 42 H 1.08999 * 109.73598 * 336.07344 * 14 12 11 43 43 H 0.96997 * 120.00613 * 180.02562 * 19 18 16 44 44 H 1.08995 * 109.91786 * 258.45766 * 24 15 14 45 45 H 1.09005 * 109.91500 * 137.16471 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3357 1.1852 0.0000 4 6 3.6684 0.8635 0.7028 5 6 4.0863 -0.5176 0.1204 6 1 4.5450 -0.4084 -0.8623 7 6 5.0014 -1.2525 1.0657 8 8 4.9323 -1.0471 2.2590 9 7 5.8967 -2.1378 0.5850 10 6 6.0801 -2.4847 -0.8353 11 6 7.5287 -3.0263 -0.9291 12 6 7.6554 -3.8011 0.4051 13 1 7.2805 -4.8228 0.3446 14 6 9.1017 -3.7336 0.9078 15 7 9.2000 -2.6321 1.8699 16 6 10.3282 -2.2866 2.5650 17 1 11.2418 -2.8449 2.4233 18 6 10.2972 -1.2197 3.4524 19 7 9.1837 -0.5397 3.6254 20 14 11.8360 -0.7489 4.4010 21 1 12.9157 -0.3905 3.4466 22 1 11.5420 0.4152 5.2750 23 1 12.2738 -1.8968 5.2353 24 6 7.9023 -1.9577 1.9719 25 6 6.8459 -2.9196 1.3942 26 1 6.3462 -3.5089 2.1631 27 16 2.4538 -1.3458 0.0006 28 8 2.2706 -1.9413 -1.2766 29 8 2.1380 -2.0376 1.2010 30 1 -0.3633 0.0007 1.0277 31 1 -0.3634 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 2.5335 1.4883 -1.0282 34 1 1.8378 1.9992 0.5269 35 1 3.5237 0.7944 1.7811 36 1 4.4167 1.6195 0.4654 37 1 5.3677 -3.2541 -1.1328 38 1 5.9655 -1.5987 -1.4599 39 1 8.2492 -2.2098 -0.9770 40 1 7.6414 -3.6956 -1.7821 41 1 9.3664 -4.6722 1.3945 42 1 9.7745 -3.5515 0.0698 43 1 9.1621 0.2061 4.2452 44 1 7.9177 -1.0334 1.3946 45 1 7.6768 -1.7425 3.0165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076349949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:14 Heat of formation + Delta-G solvation = -42.829285 kcal Electronic energy + Delta-G solvation = -29797.300337 eV Core-core repulsion = 25750.830154 eV Total energy + Delta-G solvation = -4046.470183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.31322 -38.38709 -37.26372 -37.13467 -36.11268 -35.05086 -33.30800 -32.30162 -30.74464 -29.12020 -27.92114 -26.67801 -25.70111 -24.52905 -23.08524 -22.29998 -20.61034 -19.92735 -19.25270 -18.72756 -17.73591 -17.39223 -17.05572 -16.73035 -15.97097 -15.58384 -15.28763 -15.12795 -14.71189 -14.54359 -14.12333 -13.78528 -13.53763 -13.49412 -13.41451 -13.08591 -12.88090 -12.75675 -12.36546 -12.28736 -12.17185 -12.13268 -12.01834 -11.71331 -11.58342 -11.41239 -11.25429 -11.07291 -10.78976 -10.78042 -10.49273 -10.22965 -10.07917 -9.81595 -9.76565 -9.69400 -9.34404 -8.60748 -8.35523 -6.83602 -5.64020 -3.06120 -0.18148 2.19300 2.70303 2.93197 3.35100 3.41311 3.45392 3.47421 3.58804 4.03916 4.16202 4.41270 4.49471 4.62043 4.69303 4.76478 4.82703 4.96944 5.13236 5.20834 5.25563 5.36609 5.41691 5.42796 5.46950 5.55246 5.58373 5.61375 5.74394 5.76016 5.88152 5.98043 6.16001 6.18516 6.26562 6.47049 6.49432 6.63492 6.84082 7.44490 7.61408 7.73901 7.92319 8.24695 8.37902 9.23189 9.84133 10.45966 11.40568 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.003429 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.433084 B = 8162.818463 C = 9118.368190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.998 5.998 3 C 0.081 3.919 4 C -0.110 4.110 5 C -0.592 4.592 6 H 0.162 0.838 7 C 0.548 3.452 8 O -0.494 6.494 9 N -0.604 5.604 10 C 0.086 3.914 11 C -0.119 4.119 12 C -0.111 4.111 13 H 0.091 0.909 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.232 4.232 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.915 5.915 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.166 3.834 25 C 0.113 3.887 26 H 0.088 0.912 27 S 2.588 3.412 28 O -0.949 6.949 29 O -0.934 6.934 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.025 0.975 42 H 0.027 0.973 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.390 2.058 -13.029 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.842 5.842 3 C -0.045 4.045 4 C -0.150 4.150 5 C -0.703 4.703 6 H 0.180 0.820 7 C 0.332 3.668 8 O -0.367 6.367 9 N -0.339 5.339 10 C -0.037 4.037 11 C -0.157 4.157 12 C -0.130 4.130 13 H 0.109 0.891 14 C 0.019 3.981 15 N -0.328 5.328 16 C -0.361 4.361 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.562 5.562 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.040 3.960 25 C 0.010 3.990 26 H 0.106 0.894 27 S 2.681 3.319 28 O -0.939 6.939 29 O -0.923 6.923 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.810 1.428 -12.232 20.041 hybrid contribution 1.210 1.017 0.247 1.600 sum -14.600 2.445 -11.985 19.047 Atomic orbital electron populations 1.21227 0.75768 1.02921 1.01845 1.57134 1.13819 1.21406 1.91850 1.22132 0.89785 0.90699 1.01873 1.22716 0.96146 0.92972 1.03148 1.30949 1.19483 1.10847 1.09042 0.81994 1.18365 0.80914 0.79741 0.87802 1.90807 1.68187 1.62889 1.14850 1.48506 1.36011 1.40995 1.08342 1.22545 0.98637 1.00152 0.82383 1.22781 0.94970 1.00460 0.97505 1.22915 0.97350 0.98326 0.94455 0.89093 1.20990 0.91975 0.92442 0.92710 1.44153 1.08434 1.33437 1.46808 1.18983 0.88371 1.11534 1.17173 0.90372 1.24840 0.97453 0.98117 0.99910 1.69899 1.24714 1.22427 1.39199 0.86178 0.82023 0.77765 0.79624 1.21242 1.21581 1.21087 1.21660 0.81472 0.90533 1.02329 1.23099 0.89612 0.93324 0.93003 0.89362 1.06172 0.76855 0.73670 0.75251 1.93610 1.83754 1.74357 1.42139 1.93653 1.80700 1.70652 1.47259 0.92404 0.90690 0.91321 0.90490 0.88424 0.86949 0.86408 0.91109 0.90636 0.89630 0.89930 0.95705 0.95554 0.93568 0.96127 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 0.97 11.38 59.85 0.68 1.65 16 2 N -1.00 -10.09 3.72 -120.71 -0.45 -10.54 16 3 C 0.08 0.61 6.82 -3.18 -0.02 0.59 16 4 C -0.11 -1.11 6.14 -24.79 -0.15 -1.27 16 5 C -0.59 -7.40 3.29 -26.50 -0.09 -7.48 16 6 H 0.16 1.48 6.56 -51.93 -0.34 1.13 16 7 C 0.55 9.79 6.65 -10.99 -0.07 9.72 16 8 O -0.49 -10.88 16.05 5.55 0.09 -10.79 16 9 N -0.60 -10.49 2.85 -161.70 -0.46 -10.95 16 10 C 0.09 1.12 6.64 -2.56 -0.02 1.10 16 11 C -0.12 -1.62 6.23 -24.76 -0.15 -1.77 16 12 C -0.11 -1.83 3.91 -88.33 -0.35 -2.17 16 13 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.15 2.91 6.65 -3.86 -0.03 2.88 16 15 N -0.60 -15.37 3.37 -172.25 -0.58 -15.95 16 16 C -0.23 -6.49 10.25 -15.06 -0.15 -6.64 16 17 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 18 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 19 N -0.92 -27.45 10.17 55.49 0.56 -26.88 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.17 4.15 4.81 -3.41 -0.02 4.14 16 25 C 0.11 2.24 3.87 -65.76 -0.25 1.99 16 26 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 27 S 2.59 34.92 5.83 -107.50 -0.63 34.29 16 28 O -0.95 -13.98 18.13 -57.41 -1.04 -15.02 16 29 O -0.93 -16.39 17.75 -57.41 -1.02 -17.41 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 1.36 7.29 -51.92 -0.38 0.98 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.79 6.79 -51.93 -0.35 0.44 16 39 H 0.09 1.32 7.88 -51.93 -0.41 0.91 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.02 0.57 7.94 -51.93 -0.41 0.15 16 45 H 0.10 2.89 6.22 -51.93 -0.32 2.56 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -38.19 367.00 -10.55 -48.74 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.81 Total: -0.71 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.72 Total: 2.45 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -0.93 Total: -64.32 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -1.97 Total: -43.21 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 34.92 SS G_CDS: -0.63 Total: 34.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.19 -10.55 -48.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076349949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.912 kcal (2) G-P(sol) polarization free energy of solvation -38.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds