Wall clock time and date at job start Wed Apr 1 2020 01:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 H 1.09007 * 110.21015 * 41.92786 * 9 7 6 11 11 C 1.54480 * 110.24345 * 280.00602 * 9 7 6 12 12 C 1.54630 * 101.76203 * 215.58068 * 11 9 7 13 13 C 1.51283 * 104.19487 * 24.79311 * 12 11 9 14 14 O 1.21286 * 124.94090 * 163.70756 * 13 12 11 15 15 N 1.34412 * 110.12057 * 343.75164 * 13 12 11 16 16 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 17 17 C 1.34775 * 119.99699 * 85.00331 * 16 2 1 18 18 O 1.21281 * 120.00101 * 0.02562 * 17 16 2 19 19 C 1.50703 * 120.00148 * 180.02562 * 17 16 2 20 20 S 1.80996 * 109.47281 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00008 * 179.97438 * 20 19 17 22 22 H 1.07994 * 119.99971 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00103 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99801 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00012 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47265 * 90.00285 * 25 23 21 27 27 H 1.48503 * 109.46932 * 210.00272 * 25 23 21 28 28 H 1.48503 * 109.47041 * 330.00017 * 25 23 21 29 29 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 31 31 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 32 32 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 33 33 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 34 34 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 35 35 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 37 37 H 1.08993 * 110.97070 * 333.69625 * 11 9 7 38 38 H 1.08997 * 110.96918 * 97.42637 * 11 9 7 39 39 H 1.08998 * 110.48861 * 143.47458 * 12 11 9 40 40 H 1.09007 * 110.48532 * 266.12099 * 12 11 9 41 41 H 0.96994 * 124.35318 * 179.58897 * 15 13 12 42 42 H 0.97002 * 120.00479 * 265.00508 * 16 2 1 43 43 H 1.09008 * 109.46987 * 300.00114 * 19 17 16 44 44 H 1.08991 * 109.46864 * 59.99809 * 19 17 16 45 45 H 0.97002 * 120.00098 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3743 -1.3443 2.7727 8 8 6.1588 -0.8051 2.0212 9 6 5.8771 -2.0595 4.0002 10 1 5.3413 -2.9994 4.1343 11 6 5.7069 -1.1645 5.2477 12 6 6.9629 -1.5306 6.0720 13 6 7.9534 -2.0231 5.0400 14 8 9.1461 -2.1438 5.2241 15 7 7.3195 -2.3064 3.8891 16 7 2.0183 -0.6907 -1.1962 17 6 2.1471 -0.0184 -2.3571 18 8 1.8591 1.1585 -2.4115 19 6 2.6488 -0.7289 -3.5878 20 16 2.7106 0.4343 -4.9731 21 6 3.3136 -0.6309 -6.2404 22 1 3.5228 -1.6673 -6.0204 23 6 3.5197 -0.1381 -7.5215 24 7 3.2652 1.1252 -7.7895 25 14 4.1583 -1.2676 -8.8653 26 1 3.0123 -1.9042 -9.5628 27 1 4.9538 -0.4777 -9.8392 28 1 5.0165 -2.3187 -8.2620 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.7515 -1.7716 1.2056 33 1 1.6053 -0.2618 2.1370 34 1 3.8532 0.4367 1.3574 35 1 3.9993 -1.0730 0.4260 36 1 3.4256 -1.7352 3.1112 37 1 5.7135 -0.1094 4.9746 38 1 4.7961 -1.4195 5.7894 39 1 7.3521 -0.6512 6.5852 40 1 6.7329 -2.3203 6.7873 41 1 7.7589 -2.6322 3.0881 42 1 2.2490 -1.6319 -1.1526 43 1 3.6480 -1.1216 -3.3986 44 1 1.9759 -1.5506 -3.8325 45 1 3.4096 1.4698 -8.6847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077637587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:18 Heat of formation + Delta-G solvation = -119.903055 kcal Electronic energy + Delta-G solvation = -26505.398564 eV Core-core repulsion = 22455.586211 eV Total energy + Delta-G solvation = -4049.812353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28117 -39.74010 -39.31073 -36.93676 -36.44879 -34.84840 -32.43202 -32.03652 -31.80383 -30.11847 -28.61311 -28.17525 -25.48850 -24.19728 -22.90951 -21.72648 -21.10264 -20.83877 -20.38548 -18.37454 -17.87256 -17.74757 -16.68523 -16.48954 -16.36938 -15.93372 -15.66120 -15.23557 -14.87182 -14.80482 -14.56409 -14.19982 -14.14532 -13.90817 -13.72562 -13.66667 -13.30932 -13.25565 -12.96970 -12.67329 -12.56525 -12.21708 -11.99404 -11.86397 -11.78487 -11.62142 -11.16653 -11.06537 -11.02445 -10.76209 -10.56059 -10.34836 -9.81974 -9.63189 -9.56754 -9.42053 -9.07565 -8.96750 -8.24389 -6.50287 -6.21893 -3.92398 2.01431 2.07250 2.44809 2.95132 3.00496 3.06273 3.22287 3.27701 3.31734 3.68102 3.69984 3.73563 4.02260 4.20249 4.26373 4.34011 4.38864 4.57384 4.63444 4.73321 5.00175 5.11480 5.13106 5.13195 5.13764 5.23582 5.24906 5.27082 5.46943 5.53796 5.61126 5.65067 5.87162 5.88786 5.94175 6.10735 6.13191 6.20917 6.51487 6.59890 6.91569 7.59324 7.64181 7.65837 7.77168 8.34966 8.57990 9.23511 10.85524 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.001936 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.865747 B =14459.059696 C =16262.058413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.115 3.885 6 N -0.725 5.725 7 C 0.501 3.499 8 O -0.519 6.519 9 C 0.114 3.886 10 H 0.107 0.893 11 C -0.122 4.122 12 C -0.155 4.155 13 C 0.522 3.478 14 O -0.528 6.528 15 N -0.710 5.710 16 N -0.737 5.737 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.417 0.583 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -9.558 30.672 32.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.008 4.008 6 N -0.378 5.378 7 C 0.284 3.716 8 O -0.394 6.394 9 C 0.004 3.996 10 H 0.125 0.875 11 C -0.160 4.160 12 C -0.195 4.195 13 C 0.308 3.692 14 O -0.404 6.404 15 N -0.367 5.367 16 N -0.392 5.392 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.257 0.743 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.925 -7.043 30.086 31.038 hybrid contribution 0.551 -2.923 -1.009 3.141 sum -2.374 -9.967 29.077 30.830 Atomic orbital electron populations 1.22174 0.94957 1.02114 1.02885 1.20776 0.94210 0.97759 0.83194 0.89052 1.22106 0.94319 1.02139 0.98940 1.21476 0.93796 0.98156 0.87368 1.45955 1.07122 1.57325 1.27377 1.20707 0.82741 0.81122 0.86991 1.90821 1.55223 1.44554 1.48771 1.21592 0.83655 0.99821 0.94508 0.87522 1.22628 0.99384 1.00620 0.93380 1.22378 0.94768 1.04265 0.98094 1.20835 0.88240 0.76222 0.83888 1.90793 1.14819 1.53590 1.81211 1.45964 1.07252 1.67728 1.15727 1.46132 1.69582 1.13847 1.09588 1.20304 0.76699 0.87222 0.83762 1.90702 1.48159 1.15724 1.84370 1.23539 1.03655 1.04876 0.98441 1.85388 1.86284 1.12878 0.98761 1.22862 1.51039 0.98132 0.96354 0.90952 1.24994 0.95098 0.95544 0.97975 1.70014 1.45558 1.13176 1.21504 0.86167 0.78819 0.79967 0.80543 1.20281 1.20735 1.19702 0.92522 0.91856 0.91398 0.90549 0.89638 0.90867 0.90674 0.76444 0.89206 0.87957 0.87416 0.87206 0.74252 0.76948 0.89265 0.89276 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.15 1.37 2.58 -67.93 -0.17 1.20 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.14 -0.70 4.87 -26.73 -0.13 -0.83 16 5 C 0.12 0.84 5.56 -4.04 -0.02 0.82 16 6 N -0.72 -3.50 5.56 -60.30 -0.33 -3.84 16 7 C 0.50 3.74 7.03 -10.98 -0.08 3.67 16 8 O -0.52 -6.78 16.54 5.55 0.09 -6.69 16 9 C 0.11 0.49 3.93 -68.16 -0.27 0.23 16 10 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 11 C -0.12 -0.30 6.68 -25.10 -0.17 -0.47 16 12 C -0.15 -0.62 6.86 -26.74 -0.18 -0.81 16 13 C 0.52 4.63 8.43 -10.86 -0.09 4.54 16 14 O -0.53 -7.19 18.03 5.55 0.10 -7.09 16 15 N -0.71 -5.32 5.46 -53.88 -0.29 -5.61 16 16 N -0.74 -8.62 4.53 -53.80 -0.24 -8.86 16 17 C 0.53 9.45 7.81 -10.98 -0.09 9.36 16 18 O -0.52 -11.24 15.52 5.56 0.09 -11.15 16 19 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 25 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 36 H 0.40 0.44 8.47 -40.82 -0.35 0.09 16 37 H 0.09 0.33 7.90 -51.93 -0.41 -0.08 16 38 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.22 8.14 -51.92 -0.42 -0.21 16 41 H 0.42 3.42 8.94 -40.82 -0.36 3.05 16 42 H 0.40 3.55 8.60 -40.82 -0.35 3.19 16 43 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -40.93 397.74 -8.42 -49.35 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.89 Total: -0.05 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.43 Total: 0.78 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.14 Total: -43.80 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.28 Total: -24.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -40.93 -8.42 -49.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077637587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.557 kcal (2) G-P(sol) polarization free energy of solvation -40.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds