Wall clock time and date at job start Wed Apr 1 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47028 * 2 1 4 4 C 1.53004 * 109.47019 * 119.99826 * 2 1 3 5 5 C 1.53005 * 109.47185 * 184.99913 * 4 2 1 6 6 N 1.46494 * 109.47097 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99612 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00462 * 354.92642 * 7 6 5 9 9 C 1.50705 * 119.99874 * 174.92847 * 7 6 5 10 10 C 1.50706 * 115.54820 * 40.13568 * 9 7 6 11 11 N 1.34769 * 120.00083 * 65.54961 * 10 9 7 12 12 O 1.21283 * 119.99616 * 245.54792 * 10 9 7 13 13 C 1.52993 * 117.50010 * 254.43054 * 9 7 6 14 14 C 1.52993 * 117.49860 * 185.80251 * 9 7 6 15 15 N 1.46502 * 109.47098 * 239.99783 * 2 1 3 16 16 C 1.34769 * 119.99882 * 85.00195 * 15 2 1 17 17 O 1.21279 * 120.00114 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99644 * 180.02562 * 16 15 2 19 19 S 1.81003 * 109.46821 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99844 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00238 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00087 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99837 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00322 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46812 * 60.00008 * 24 22 20 26 26 H 1.48490 * 109.47364 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47045 * 300.00488 * 24 22 20 28 28 H 1.09006 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47023 * 300.00200 * 1 2 3 30 30 H 1.09001 * 109.47160 * 60.00386 * 1 2 3 31 31 H 1.09003 * 109.47274 * 65.00023 * 4 2 1 32 32 H 1.08995 * 109.47083 * 304.99798 * 4 2 1 33 33 H 1.09005 * 109.47119 * 300.00091 * 5 4 2 34 34 H 1.09003 * 109.46925 * 59.99896 * 5 4 2 35 35 H 0.96998 * 120.00121 * 359.97438 * 6 5 4 36 36 H 0.97004 * 120.00442 * 354.99321 * 11 10 9 37 37 H 0.97005 * 120.00556 * 174.98764 * 11 10 9 38 38 H 1.09002 * 117.50194 * 359.97438 * 13 9 7 39 39 H 1.08993 * 117.50045 * 145.02319 * 13 9 7 40 40 H 1.09005 * 117.50208 * 214.97600 * 14 9 7 41 41 H 1.08998 * 117.50197 * 0.02562 * 14 9 7 42 42 H 0.96998 * 119.99596 * 265.00059 * 15 2 1 43 43 H 1.09001 * 109.47388 * 299.99665 * 18 16 15 44 44 H 1.09002 * 109.47275 * 60.00167 * 18 16 15 45 45 H 0.97000 * 119.99673 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3138 6 7 4.0532 -1.3044 2.5096 7 6 5.3741 -1.3398 2.7752 8 8 6.1653 -0.8805 1.9791 9 6 5.8679 -1.9502 4.0616 10 6 5.1592 -3.2062 4.4991 11 7 5.2576 -4.3281 3.7588 12 8 4.5004 -3.2074 5.5174 13 6 6.3560 -0.9969 5.1542 14 6 7.3627 -1.8393 4.3680 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6489 -0.7290 -3.5876 19 16 2.7092 0.4339 -4.9734 20 6 3.3125 -0.6314 -6.2406 21 1 3.5218 -1.6678 -6.0207 22 6 3.5178 -0.1388 -7.5220 23 7 3.2622 1.1243 -7.7902 24 14 4.1567 -1.2683 -8.8657 25 1 3.2057 -2.3920 -9.0614 26 1 4.2892 -0.5050 -10.1324 27 1 5.4836 -1.8058 -8.4711 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -1.7715 1.2057 32 1 1.6054 -0.2617 2.1370 33 1 3.9995 -1.0729 0.4260 34 1 3.8532 0.4370 1.3574 35 1 3.4258 -1.7358 3.1106 36 1 5.7234 -4.3087 2.9082 37 1 4.8626 -5.1552 4.0766 38 1 6.3204 0.0717 4.9425 39 1 6.1646 -1.2781 6.1897 40 1 7.8336 -2.6745 4.8865 41 1 7.9890 -1.3245 3.6394 42 1 2.2490 -1.6318 -1.1525 43 1 3.6480 -1.1216 -3.3985 44 1 1.9759 -1.5508 -3.8325 45 1 3.4060 1.4686 -8.6856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078111421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:10 Heat of formation + Delta-G solvation = -99.047474 kcal Electronic energy + Delta-G solvation = -26827.357485 eV Core-core repulsion = 22778.449498 eV Total energy + Delta-G solvation = -4048.907987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16707 -39.61089 -39.22328 -36.99402 -36.19688 -34.75958 -34.18294 -32.42432 -31.88310 -29.66649 -28.49749 -26.16813 -25.47827 -23.80402 -23.01441 -22.18185 -21.62234 -20.37380 -20.03022 -18.71927 -17.82331 -17.63517 -16.72437 -16.60364 -16.35985 -15.93537 -15.67959 -15.27193 -15.02406 -14.80238 -14.74193 -14.53257 -14.25580 -13.78551 -13.65894 -13.53588 -13.24293 -12.93270 -12.65372 -12.19712 -12.17553 -11.96497 -11.84906 -11.68060 -11.59626 -11.17590 -11.12283 -11.04082 -11.03328 -10.76594 -10.69941 -10.32365 -10.17607 -9.82092 -9.52241 -9.39435 -9.06100 -8.93584 -8.23675 -6.49366 -6.21054 -3.91591 1.85154 1.96681 2.54439 2.71837 3.02321 3.08877 3.23680 3.27674 3.30623 3.31019 3.70124 4.09194 4.16541 4.18251 4.20955 4.27063 4.39016 4.62458 4.69009 5.01131 5.12019 5.13916 5.14249 5.18754 5.27960 5.29538 5.31447 5.51557 5.56550 5.57773 5.65146 5.68824 5.88761 5.95077 5.98011 6.13441 6.13721 6.15709 6.62998 6.65749 6.97247 7.58223 7.59594 7.68279 7.71560 8.35415 8.60656 9.24090 10.86307 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.002049 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.497409 B =13664.169920 C =14757.570585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.116 3.884 6 N -0.723 5.723 7 C 0.553 3.447 8 O -0.520 6.520 9 C -0.207 4.207 10 C 0.558 3.442 11 N -0.845 5.845 12 O -0.530 6.530 13 C -0.119 4.119 14 C -0.126 4.126 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.401 0.599 36 H 0.406 0.594 37 H 0.407 0.593 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.396 0.604 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -10.937 27.549 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.007 4.007 6 N -0.375 5.375 7 C 0.338 3.662 8 O -0.395 6.395 9 C -0.214 4.214 10 C 0.341 3.659 11 N -0.409 5.409 12 O -0.406 6.406 13 C -0.157 4.157 14 C -0.164 4.164 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.235 0.765 37 H 0.238 0.762 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.067 -8.262 27.403 28.696 hybrid contribution 0.495 -3.224 -0.867 3.375 sum 2.563 -11.486 26.536 29.029 Atomic orbital electron populations 1.22174 0.94947 1.02122 1.02880 1.20769 0.94222 0.97727 0.83115 0.89003 1.22118 0.94365 1.02162 0.98996 1.21496 0.93857 0.98024 0.87308 1.45957 1.07123 1.57050 1.27373 1.19007 0.82512 0.79222 0.85504 1.90787 1.54795 1.46661 1.47293 1.21542 1.01570 0.99251 0.99022 1.19194 0.79784 0.83756 0.83189 1.43798 1.60087 1.11932 1.25040 1.90788 1.40063 1.84581 1.25157 1.23073 0.99386 0.97374 0.95853 1.23144 0.87983 1.02831 1.02398 1.46129 1.69538 1.13834 1.09587 1.20297 0.76737 0.87228 0.83746 1.90701 1.48154 1.15733 1.84360 1.23538 1.03645 1.04860 0.98432 1.85393 1.86271 1.12910 0.98716 1.22821 1.51102 0.98115 0.96368 0.91014 1.24993 0.95102 0.95547 0.97952 1.70009 1.45460 1.13216 1.21596 0.86226 0.79313 0.80008 0.79963 1.19962 1.20810 1.19940 0.92540 0.91842 0.91376 0.90612 0.89630 0.90497 0.90799 0.76467 0.76500 0.76177 0.87086 0.86654 0.87355 0.86104 0.76976 0.89262 0.89299 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 2 C 0.15 1.52 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 4 C -0.14 -0.94 4.87 -26.73 -0.13 -1.07 16 5 C 0.12 1.02 5.57 -4.04 -0.02 0.99 16 6 N -0.72 -5.62 5.49 -60.29 -0.33 -5.95 16 7 C 0.55 5.26 7.32 -10.98 -0.08 5.18 16 8 O -0.52 -6.93 16.28 5.56 0.09 -6.84 16 9 C -0.21 -1.53 2.39 -156.81 -0.37 -1.90 16 10 C 0.56 4.09 6.65 -10.99 -0.07 4.01 16 11 N -0.85 -3.56 8.87 31.22 0.28 -3.28 16 12 O -0.53 -5.63 17.54 5.55 0.10 -5.53 16 13 C -0.12 -0.76 9.76 -26.73 -0.26 -1.02 16 14 C -0.13 -0.76 9.75 -26.73 -0.26 -1.02 16 15 N -0.74 -9.01 4.53 -53.81 -0.24 -9.25 16 16 C 0.53 9.60 7.81 -10.99 -0.09 9.51 16 17 O -0.52 -11.36 15.52 5.56 0.09 -11.28 16 18 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.79 7.75 -51.93 -0.40 0.38 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 2.50 7.87 -40.82 -0.32 2.17 16 36 H 0.41 1.23 8.83 -40.82 -0.36 0.87 16 37 H 0.41 1.17 8.93 -40.82 -0.36 0.81 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 0.69 8.00 -51.93 -0.42 0.28 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.12 0.83 7.68 -51.93 -0.40 0.43 16 42 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -38.23 403.01 -7.92 -46.16 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.78 Total: 3.85 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.69 Total: -1.04 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.44 Total: -43.97 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.27 Total: -23.65 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.23 -7.92 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078111421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.892 kcal (2) G-P(sol) polarization free energy of solvation -38.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds