Wall clock time and date at job start Wed Apr 1 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47028 * 2 1 4 4 C 1.53004 * 109.47019 * 119.99826 * 2 1 3 5 5 C 1.53005 * 109.47185 * 184.99913 * 4 2 1 6 6 N 1.46494 * 109.47097 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99612 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00462 * 354.92642 * 7 6 5 9 9 C 1.50705 * 119.99874 * 174.92847 * 7 6 5 10 10 C 1.50706 * 115.54820 * 40.13568 * 9 7 6 11 11 N 1.34769 * 120.00083 * 65.54961 * 10 9 7 12 12 O 1.21283 * 119.99616 * 245.54792 * 10 9 7 13 13 C 1.52993 * 117.50010 * 254.43054 * 9 7 6 14 14 C 1.52993 * 117.49860 * 185.80251 * 9 7 6 15 15 N 1.46502 * 109.47098 * 239.99783 * 2 1 3 16 16 C 1.34769 * 119.99882 * 85.00195 * 15 2 1 17 17 O 1.21279 * 120.00114 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99644 * 180.02562 * 16 15 2 19 19 S 1.81003 * 109.46821 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99844 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00238 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00087 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99837 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00322 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46812 * 60.00008 * 24 22 20 26 26 H 1.48490 * 109.47364 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47045 * 300.00488 * 24 22 20 28 28 H 1.09006 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47023 * 300.00200 * 1 2 3 30 30 H 1.09001 * 109.47160 * 60.00386 * 1 2 3 31 31 H 1.09003 * 109.47274 * 65.00023 * 4 2 1 32 32 H 1.08995 * 109.47083 * 304.99798 * 4 2 1 33 33 H 1.09005 * 109.47119 * 300.00091 * 5 4 2 34 34 H 1.09003 * 109.46925 * 59.99896 * 5 4 2 35 35 H 0.96998 * 120.00121 * 359.97438 * 6 5 4 36 36 H 0.97004 * 120.00442 * 354.99321 * 11 10 9 37 37 H 0.97005 * 120.00556 * 174.98764 * 11 10 9 38 38 H 1.09002 * 117.50194 * 359.97438 * 13 9 7 39 39 H 1.08993 * 117.50045 * 145.02319 * 13 9 7 40 40 H 1.09005 * 117.50208 * 214.97600 * 14 9 7 41 41 H 1.08998 * 117.50197 * 0.02562 * 14 9 7 42 42 H 0.96998 * 119.99596 * 265.00059 * 15 2 1 43 43 H 1.09001 * 109.47388 * 299.99665 * 18 16 15 44 44 H 1.09002 * 109.47275 * 60.00167 * 18 16 15 45 45 H 0.97000 * 119.99673 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3138 6 7 4.0532 -1.3044 2.5096 7 6 5.3741 -1.3398 2.7752 8 8 6.1653 -0.8805 1.9791 9 6 5.8679 -1.9502 4.0616 10 6 5.1592 -3.2062 4.4991 11 7 5.2576 -4.3281 3.7588 12 8 4.5004 -3.2074 5.5174 13 6 6.3560 -0.9969 5.1542 14 6 7.3627 -1.8393 4.3680 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6489 -0.7290 -3.5876 19 16 2.7092 0.4339 -4.9734 20 6 3.3125 -0.6314 -6.2406 21 1 3.5218 -1.6678 -6.0207 22 6 3.5178 -0.1388 -7.5220 23 7 3.2622 1.1243 -7.7902 24 14 4.1567 -1.2683 -8.8657 25 1 3.2057 -2.3920 -9.0614 26 1 4.2892 -0.5050 -10.1324 27 1 5.4836 -1.8058 -8.4711 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -1.7715 1.2057 32 1 1.6054 -0.2617 2.1370 33 1 3.9995 -1.0729 0.4260 34 1 3.8532 0.4370 1.3574 35 1 3.4258 -1.7358 3.1106 36 1 5.7234 -4.3087 2.9082 37 1 4.8626 -5.1552 4.0766 38 1 6.3204 0.0717 4.9425 39 1 6.1646 -1.2781 6.1897 40 1 7.8336 -2.6745 4.8865 41 1 7.9890 -1.3245 3.6394 42 1 2.2490 -1.6318 -1.1525 43 1 3.6480 -1.1216 -3.3985 44 1 1.9759 -1.5508 -3.8325 45 1 3.4060 1.4686 -8.6856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078111421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:10 Heat of formation + Delta-G solvation = -131.106376 kcal Electronic energy + Delta-G solvation = -26828.747663 eV Core-core repulsion = 22778.449498 eV Total energy + Delta-G solvation = -4050.298165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81831 -40.81264 -40.02284 -37.87306 -36.93115 -35.68184 -34.67257 -34.58517 -33.06055 -30.64024 -29.76251 -27.65793 -26.78157 -24.51881 -23.50993 -22.88194 -22.57720 -21.60937 -20.68701 -19.83981 -19.27907 -18.11359 -17.93766 -17.50442 -17.21492 -16.88141 -16.80141 -16.54414 -16.37527 -16.00724 -15.80626 -15.42731 -15.15894 -14.85173 -14.78609 -14.47644 -14.40809 -14.16651 -13.96492 -13.32564 -13.17402 -13.04836 -12.86759 -12.70210 -12.62598 -12.50425 -12.45498 -12.25390 -11.94912 -11.74976 -11.73016 -11.33155 -11.13043 -10.94070 -10.89704 -10.77829 -10.29379 -10.27885 -10.09153 -8.66597 -8.34587 -6.12665 1.24682 1.27099 1.28314 1.43549 1.46893 1.56711 1.64227 1.87760 2.23821 2.26379 2.31760 2.75178 2.99312 3.32421 3.48867 3.59733 3.67555 3.69194 3.80648 3.87532 3.99962 4.06415 4.29369 4.40835 4.45833 4.50886 4.53042 4.60374 4.64004 4.80339 4.82591 4.85672 4.99122 5.08327 5.11114 5.25318 5.32522 5.41202 5.55443 5.75864 6.19388 6.21792 6.31901 6.52954 6.99362 7.06438 7.14961 7.28131 8.74364 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.002049 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.497409 B =13664.169920 C =14757.570585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.066 0.934 4 C -0.120 4.120 5 C 0.117 3.883 6 N -0.709 5.709 7 C 0.553 3.447 8 O -0.564 6.564 9 C -0.213 4.213 10 C 0.563 3.437 11 N -0.827 5.827 12 O -0.564 6.564 13 C -0.118 4.118 14 C -0.117 4.117 15 N -0.709 5.709 16 C 0.535 3.465 17 O -0.564 6.564 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.412 0.588 36 H 0.414 0.586 37 H 0.416 0.584 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.414 0.586 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -14.098 29.081 32.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.158 4.158 5 C -0.006 4.006 6 N -0.361 5.361 7 C 0.339 3.661 8 O -0.442 6.442 9 C -0.219 4.219 10 C 0.346 3.654 11 N -0.391 5.391 12 O -0.443 6.443 13 C -0.155 4.155 14 C -0.154 4.154 15 N -0.364 5.364 16 C 0.321 3.679 17 O -0.442 6.442 18 C -0.282 4.282 19 S 0.074 5.926 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.185 1.185 26 H -0.204 1.204 27 H -0.187 1.187 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.249 0.751 36 H 0.244 0.756 37 H 0.249 0.751 38 H 0.128 0.872 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.252 0.748 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.055 -11.506 28.979 31.248 hybrid contribution 0.479 -2.262 -1.213 2.611 sum 2.534 -13.768 27.766 31.096 Atomic orbital electron populations 1.22124 0.93980 1.03203 1.02289 1.20940 0.94903 0.96856 0.83384 0.91580 1.22007 0.92569 1.03538 0.97700 1.21395 0.95234 0.96802 0.87176 1.45827 1.06896 1.56311 1.27035 1.19338 0.82564 0.78531 0.85674 1.90771 1.55905 1.48702 1.48844 1.21476 1.02522 0.99744 0.98200 1.19093 0.79300 0.84139 0.82847 1.43677 1.59099 1.11491 1.24789 1.90780 1.41668 1.85135 1.26707 1.23135 0.99221 0.97291 0.95893 1.23204 0.87184 1.03173 1.01880 1.45888 1.67559 1.14495 1.08427 1.20009 0.76646 0.86578 0.84696 1.90691 1.50616 1.17735 1.85161 1.23384 1.05362 1.03220 0.96202 1.85576 1.86668 1.17466 1.02841 1.23167 1.51004 0.98446 0.96813 0.89944 1.26145 0.95093 0.97234 1.00790 1.70182 1.46796 1.15501 1.22295 0.85003 0.79071 0.77759 0.76160 1.18538 1.20409 1.18726 0.90544 0.89516 0.94955 0.87832 0.87267 0.91910 0.92852 0.75133 0.75561 0.75101 0.87209 0.86014 0.85392 0.87057 0.74843 0.87584 0.87201 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.48 71.98 0.68 -2.11 16 2 C 0.14 2.75 2.57 44.99 0.12 2.86 16 3 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 4 C -0.12 -1.27 4.87 30.60 0.15 -1.12 16 5 C 0.12 1.89 5.57 86.38 0.48 2.37 16 6 N -0.71 -9.75 5.49 -463.05 -2.54 -12.29 16 7 C 0.55 10.00 7.32 87.66 0.64 10.65 16 8 O -0.56 -15.04 16.28 -3.02 -0.05 -15.09 16 9 C -0.21 -2.84 2.39 -53.67 -0.13 -2.97 16 10 C 0.56 7.13 6.65 87.66 0.58 7.71 16 11 N -0.83 -4.98 8.87 -173.53 -1.54 -6.52 16 12 O -0.56 -10.97 17.54 -3.04 -0.05 -11.03 16 13 C -0.12 -1.37 9.76 30.59 0.30 -1.07 16 14 C -0.12 -1.26 9.75 30.59 0.30 -0.96 16 15 N -0.71 -16.31 4.53 -442.54 -2.00 -18.31 16 16 C 0.53 19.26 7.81 87.66 0.68 19.94 16 17 O -0.56 -25.80 15.52 -3.03 -0.05 -25.85 16 18 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 19 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 20 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -56.42 13.22 21.65 0.29 -56.14 16 24 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 28 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.21 7.75 -2.38 -0.02 1.19 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.41 3.99 7.87 -92.71 -0.73 3.26 16 36 H 0.41 1.50 8.83 -92.71 -0.82 0.68 16 37 H 0.42 1.33 8.93 -92.70 -0.83 0.50 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.12 1.29 8.00 -2.39 -0.02 1.27 16 40 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.11 1.46 7.68 -2.39 -0.02 1.45 16 42 H 0.41 6.67 8.60 -92.71 -0.80 5.87 16 43 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 44 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 45 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -87.61 403.01 -1.84 -89.45 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -2.12 Total: 18.67 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.36 Total: 1.02 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -5.80 Total: -93.26 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.15 Total: -51.96 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -87.61 -1.84 -89.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078111421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.656 kcal (2) G-P(sol) polarization free energy of solvation -87.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds