Wall clock time and date at job start Wed Apr 1 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47555 * 2 1 4 4 C 1.34774 * 120.00111 * 270.00328 * 3 2 1 5 5 O 1.21287 * 119.99586 * 185.36859 * 4 3 2 6 6 C 1.50699 * 120.00316 * 5.37159 * 4 3 2 7 7 N 1.46496 * 109.47302 * 180.02562 * 6 4 3 8 8 C 1.34771 * 119.99972 * 179.97438 * 7 6 4 9 9 C 1.50704 * 119.99873 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00038 * 0.02562 * 8 7 6 11 11 C 1.46508 * 119.99689 * 89.99995 * 3 2 1 12 12 C 1.53494 * 114.20365 * 65.64104 * 11 3 2 13 13 N 1.47065 * 87.98785 * 220.14574 * 12 11 3 14 14 C 1.34772 * 136.06414 * 207.09017 * 13 12 11 15 15 O 1.21281 * 119.99869 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00392 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.47123 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99801 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00490 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00003 * 179.72348 * 18 17 16 21 21 N 1.31625 * 119.99782 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99706 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46827 * 89.99880 * 22 20 18 24 24 H 1.48502 * 109.46805 * 209.99513 * 22 20 18 25 25 H 1.48490 * 109.47274 * 330.00182 * 22 20 18 26 26 C 1.47070 * 87.88259 * 27.34659 * 13 12 11 27 27 H 1.08998 * 109.47383 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46705 * 300.00109 * 1 2 3 29 29 H 1.09006 * 109.46741 * 59.99355 * 1 2 3 30 30 H 1.09003 * 109.47215 * 240.00392 * 2 1 3 31 31 H 1.09001 * 109.47427 * 120.00466 * 2 1 3 32 32 H 1.09002 * 109.46494 * 300.00112 * 6 4 3 33 33 H 1.09001 * 109.46773 * 59.99860 * 6 4 3 34 34 H 0.96999 * 120.00219 * 0.02562 * 7 6 4 35 35 H 1.09005 * 109.46684 * 90.00764 * 9 8 7 36 36 H 1.09002 * 109.47417 * 209.99954 * 9 8 7 37 37 H 1.08990 * 109.47479 * 330.00740 * 9 8 7 38 38 H 1.09000 * 113.27891 * 198.71113 * 11 3 2 39 39 H 1.09006 * 113.46366 * 105.37169 * 12 11 3 40 40 H 1.08991 * 113.52378 * 334.93990 * 12 11 3 41 41 H 1.09008 * 109.46904 * 59.99725 * 16 14 13 42 42 H 1.08995 * 109.47375 * 300.00061 * 16 14 13 43 43 H 0.97008 * 119.99570 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.46910 * 87.43410 * 26 13 12 45 45 H 1.09000 * 113.46828 * 217.88110 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.7387 3.1235 -1.1694 6 6 1.8782 1.3517 -2.4694 7 7 2.2194 2.2397 -3.5835 8 6 1.9811 1.8516 -4.8519 9 6 2.3316 2.7654 -5.9979 10 8 1.4837 0.7675 -5.0710 11 6 2.2626 2.0717 1.2688 12 6 3.4032 1.4717 2.1025 13 7 2.5772 1.6953 3.2985 14 6 2.8053 1.9092 4.6095 15 8 3.9427 1.9478 5.0286 16 6 1.6472 2.1005 5.5545 17 16 2.2743 2.3640 7.2318 18 6 0.7533 2.5536 8.1009 19 1 -0.1843 2.4908 7.5686 20 6 0.7599 2.7774 9.4708 21 7 -0.3763 2.9186 10.1200 22 14 2.3814 2.8784 10.3928 23 1 2.8536 4.2862 10.4112 24 1 2.1888 2.4026 11.7863 25 1 3.3907 2.0267 9.7139 26 6 1.3922 1.5764 2.4356 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.4310 0.4173 -2.5676 33 1 0.8083 1.1442 -2.4842 34 1 2.6176 3.1067 -3.4083 35 1 3.3531 2.5662 -6.3221 36 1 1.6463 2.5879 -6.8269 37 1 2.2490 3.8027 -5.6739 38 1 2.3054 3.1562 1.1678 39 1 4.3141 2.0701 2.0861 40 1 3.5874 0.4181 1.8930 41 1 1.0148 1.2127 5.5387 42 1 1.0641 2.9674 5.2439 43 1 -0.3717 3.0754 11.0773 44 1 1.0455 0.5503 2.3133 45 1 0.5898 2.2641 2.7028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079226475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:44 Heat of formation + Delta-G solvation = -58.928155 kcal Electronic energy + Delta-G solvation = -27033.412154 eV Core-core repulsion = 22986.243871 eV Total energy + Delta-G solvation = -4047.168283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40357 -40.24614 -39.36110 -37.86832 -35.94287 -34.94767 -32.47835 -31.43816 -31.01616 -30.36325 -28.55147 -27.06825 -26.19382 -25.61406 -24.13564 -22.45577 -21.12053 -19.73170 -19.29440 -18.13114 -17.84954 -17.59878 -16.84050 -16.64651 -16.55740 -16.23071 -15.71675 -15.31202 -14.99072 -14.95165 -14.49935 -14.33740 -14.07755 -13.91190 -13.64589 -13.55641 -13.14725 -13.06540 -12.98412 -12.92567 -12.86363 -12.76656 -12.51650 -12.25020 -11.92082 -11.71170 -11.35293 -11.29561 -11.03903 -10.67135 -10.51685 -10.46744 -9.90061 -9.71306 -9.65446 -9.29808 -9.04082 -8.82155 -8.55695 -6.97408 -6.32606 -4.05181 1.90652 1.98783 2.13819 2.52487 2.77175 2.87136 3.11361 3.30638 3.47606 3.52848 3.72333 3.92712 4.25609 4.26737 4.31041 4.36842 4.55786 4.59776 4.65616 4.70933 4.76471 4.82008 4.87106 4.92610 4.93935 5.06502 5.07186 5.11027 5.20109 5.26280 5.33814 5.42168 5.52919 5.67692 5.69542 5.70974 5.76777 5.93942 5.96118 6.68725 6.96415 7.45210 7.61021 7.68651 7.90266 8.29527 8.37504 9.13360 10.76484 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030800 B = 0.001814 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.879807 B =15433.361866 C =15735.072620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 N -0.595 5.595 4 C 0.515 3.485 5 O -0.530 6.530 6 C 0.099 3.901 7 N -0.721 5.721 8 C 0.514 3.486 9 C -0.172 4.172 10 O -0.549 6.549 11 C 0.111 3.889 12 C 0.093 3.907 13 N -0.648 5.648 14 C 0.565 3.435 15 O -0.511 6.511 16 C -0.116 4.116 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.089 0.911 20 C 0.097 3.903 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.235 1.235 26 C 0.089 3.911 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.413 0.587 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.093 0.907 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 -4.468 -30.838 31.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.030 4.030 3 N -0.328 5.328 4 C 0.302 3.698 5 O -0.407 6.407 6 C -0.028 4.028 7 N -0.378 5.378 8 C 0.301 3.699 9 C -0.231 4.231 10 O -0.426 6.426 11 C 0.007 3.993 12 C -0.032 4.032 13 N -0.387 5.387 14 C 0.355 3.645 15 O -0.384 6.384 16 C -0.266 4.266 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.107 0.893 20 C -0.112 4.112 21 N -0.515 5.515 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.035 4.035 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.251 0.749 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.010 -4.519 -29.917 30.521 hybrid contribution -0.787 0.282 0.350 0.906 sum 3.223 -4.237 -29.567 30.042 Atomic orbital electron populations 1.22339 0.94869 1.03282 1.03193 1.21790 0.95317 0.81569 1.04315 1.47799 1.65537 1.14436 1.05044 1.20531 0.77903 0.85935 0.85397 1.90730 1.43001 1.20046 1.86886 1.21170 1.03113 0.94319 0.84236 1.45877 1.64929 1.21948 1.05018 1.20863 0.77537 0.87680 0.83801 1.21872 1.04706 0.99639 0.96902 1.90738 1.43738 1.23214 1.84915 1.23031 0.96363 0.99115 0.80827 1.23342 0.96816 1.01227 0.81777 1.49298 1.10169 1.73525 1.05727 1.19890 0.90665 0.74998 0.78969 1.90730 1.23684 1.49398 1.74612 1.23219 0.98875 1.05591 0.98918 1.84821 1.14286 1.94704 0.97599 1.22294 0.91532 1.57184 0.95972 0.89347 1.24705 0.96858 0.93185 0.96477 1.69936 1.25555 1.46642 1.09399 0.86741 0.84477 0.80446 0.80236 1.19157 1.19864 1.15939 1.23542 0.91170 1.02392 0.86396 0.90680 0.91409 0.92081 0.89505 0.89211 0.88241 0.87977 0.74866 0.88592 0.88616 0.89882 0.84673 0.89747 0.89809 0.88466 0.88438 0.91892 0.88917 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 9.93 37.16 0.37 -0.28 16 2 C 0.09 0.35 5.05 -4.04 -0.02 0.33 16 3 N -0.60 -3.75 2.71 -165.72 -0.45 -4.20 16 4 C 0.51 3.87 7.73 -10.99 -0.08 3.78 16 5 O -0.53 -5.67 15.26 5.55 0.08 -5.59 16 6 C 0.10 0.59 4.84 -5.20 -0.03 0.57 16 7 N -0.72 -4.61 5.53 -61.48 -0.34 -4.95 16 8 C 0.51 3.73 7.94 -10.99 -0.09 3.64 16 9 C -0.17 -0.61 10.30 36.01 0.37 -0.24 16 10 O -0.55 -6.14 17.10 5.56 0.10 -6.05 16 11 C 0.11 0.92 4.49 -67.67 -0.30 0.61 16 12 C 0.09 0.94 8.19 -8.51 -0.07 0.87 16 13 N -0.65 -8.40 3.69 -185.08 -0.68 -9.08 16 14 C 0.57 10.22 8.10 -10.99 -0.09 10.13 16 15 O -0.51 -11.27 16.64 5.56 0.09 -11.18 16 16 C -0.12 -2.23 5.98 36.01 0.22 -2.01 16 17 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 18 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.27 13.97 55.49 0.78 -25.49 16 22 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 26 C 0.09 0.76 6.97 -8.37 -0.06 0.70 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.29 6.44 -51.93 -0.33 -0.04 16 29 H 0.06 0.23 6.92 -51.93 -0.36 -0.13 16 30 H 0.09 0.21 6.48 -51.93 -0.34 -0.12 16 31 H 0.09 0.32 6.22 -51.93 -0.32 0.00 16 32 H 0.10 0.52 7.24 -51.93 -0.38 0.14 16 33 H 0.10 0.55 6.92 -51.93 -0.36 0.20 16 34 H 0.41 2.39 7.44 -40.82 -0.30 2.09 16 35 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 38 H 0.14 1.31 7.44 -51.93 -0.39 0.92 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.70 7.37 -51.93 -0.38 0.32 16 41 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 42 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 0.61 5.33 -51.93 -0.28 0.33 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -38.09 386.47 -7.27 -45.36 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.40 Total: -2.25 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 0.43 Total: 6.22 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.70 Total: -43.72 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.27 Total: -22.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.09 -7.27 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079226475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.568 kcal (2) G-P(sol) polarization free energy of solvation -38.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds