Wall clock time and date at job start Wed Apr 1 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.46704 * 2 1 4 4 C 1.34776 * 120.00189 * 269.99519 * 3 2 1 5 5 O 1.21285 * 120.00034 * 185.37450 * 4 3 2 6 6 C 1.50705 * 119.99909 * 5.37956 * 4 3 2 7 7 S 1.81002 * 109.46976 * 179.97438 * 6 4 3 8 8 C 1.76205 * 99.99712 * 180.02562 * 7 6 4 9 9 H 1.07994 * 119.99970 * 359.97438 * 8 7 6 10 10 C 1.38795 * 119.99799 * 180.02562 * 8 7 6 11 11 N 1.31636 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00028 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46862 * 60.00412 * 12 10 8 14 14 H 1.48503 * 109.47173 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47538 * 300.00559 * 12 10 8 16 16 C 1.46496 * 119.99891 * 90.00695 * 3 2 1 17 17 C 1.53496 * 114.21175 * 65.63159 * 16 3 2 18 18 N 1.47068 * 87.98765 * 220.15086 * 17 16 3 19 19 C 1.34777 * 136.05758 * 207.08497 * 18 17 16 20 20 O 1.21283 * 119.99735 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.99926 * 180.02562 * 19 18 17 22 22 C 1.50704 * 109.47090 * 180.02562 * 21 19 18 23 23 O 1.21285 * 119.99767 * 0.02562 * 22 21 19 24 24 N 1.34775 * 120.00348 * 180.02562 * 22 21 19 25 25 C 1.46498 * 120.00301 * 180.02562 * 24 22 21 26 26 C 1.47063 * 87.88466 * 27.34337 * 18 17 16 27 27 H 1.09002 * 109.47603 * 299.99900 * 1 2 3 28 28 H 1.09001 * 109.47629 * 60.00027 * 1 2 3 29 29 H 1.09006 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47604 * 240.00649 * 2 1 3 31 31 H 1.09001 * 109.47629 * 119.99973 * 2 1 3 32 32 H 1.08998 * 109.46873 * 300.00032 * 6 4 3 33 33 H 1.09003 * 109.46968 * 59.99818 * 6 4 3 34 34 H 0.96992 * 120.00094 * 179.97438 * 11 10 8 35 35 H 1.09003 * 113.28218 * 198.70544 * 16 3 2 36 36 H 1.09003 * 113.46473 * 105.36810 * 17 16 3 37 37 H 1.08996 * 113.52204 * 334.94494 * 17 16 3 38 38 H 1.09002 * 109.47322 * 299.99881 * 21 19 18 39 39 H 1.08998 * 109.47219 * 60.00778 * 21 19 18 40 40 H 0.97005 * 119.99742 * 359.97438 * 24 22 21 41 41 H 1.08998 * 109.47079 * 59.99280 * 25 24 22 42 42 H 1.08996 * 109.47038 * 179.97438 * 25 24 22 43 43 H 1.09002 * 109.46822 * 299.99676 * 25 24 22 44 44 H 1.09000 * 113.46929 * 87.43598 * 26 18 17 45 45 H 1.09002 * 113.47002 * 217.87576 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2429 2.0167 -1.1672 5 8 2.7385 3.1236 -1.1694 6 6 1.8782 1.3517 -2.4695 7 16 2.2984 2.4495 -3.8459 8 6 1.7808 1.4511 -5.2024 9 1 1.3537 0.4756 -5.0229 10 6 1.9231 1.9180 -6.5017 11 7 2.4442 3.1068 -6.7206 12 14 1.3751 0.8594 -7.9399 13 1 -0.0770 0.5729 -7.8186 14 1 1.6322 1.5811 -9.2120 15 1 2.1337 -0.4172 -7.9323 16 6 2.2624 2.0718 1.2687 17 6 3.4030 1.4719 2.1025 18 7 2.5769 1.6956 3.2985 19 6 2.8050 1.9095 4.6095 20 8 3.9425 1.9489 5.0284 21 6 1.6469 2.0995 5.5546 22 6 2.1690 2.3204 6.9510 23 8 3.3640 2.3236 7.1580 24 7 1.3081 2.5143 7.9696 25 6 1.8157 2.7296 9.3269 26 6 1.3920 1.5766 2.4355 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4309 0.4174 -2.5676 33 1 0.8082 1.1442 -2.4843 34 1 2.5440 3.4330 -7.6285 35 1 2.3052 3.1563 1.1677 36 1 4.3139 2.0704 2.0860 37 1 3.5874 0.4183 1.8931 38 1 1.0629 2.9660 5.2442 39 1 1.0154 1.2112 5.5389 40 1 0.3523 2.5121 7.8039 41 1 2.4464 3.6185 9.3422 42 1 0.9780 2.8670 10.0105 43 1 2.4005 1.8638 9.6376 44 1 1.0453 0.5504 2.3132 45 1 0.5895 2.2641 2.7027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079341930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:37 Heat of formation + Delta-G solvation = -51.704395 kcal Electronic energy + Delta-G solvation = -27115.945800 eV Core-core repulsion = 23069.090763 eV Total energy + Delta-G solvation = -4046.855037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17512 -40.17157 -38.96826 -37.66188 -35.41865 -34.88065 -32.45658 -31.89303 -30.69032 -29.83496 -28.23779 -26.79750 -26.10040 -25.51045 -23.71343 -22.35729 -21.03509 -19.35993 -19.20841 -17.87226 -17.77322 -17.40269 -17.13034 -16.45909 -16.25823 -15.93576 -15.51851 -15.09601 -14.89239 -14.82419 -14.35844 -14.02158 -13.91814 -13.57561 -13.52564 -13.38710 -13.21322 -12.95206 -12.85682 -12.69453 -12.55107 -12.53718 -12.24410 -12.08283 -11.71880 -11.32792 -11.14651 -11.07305 -11.04770 -10.79698 -10.49060 -9.86066 -9.75934 -9.53841 -9.46753 -9.08554 -8.99798 -8.70440 -8.26959 -6.53748 -6.24195 -3.95491 2.15833 2.23286 2.42260 2.77240 2.88910 3.02983 3.21223 3.23608 3.27137 3.53638 3.92329 4.06230 4.17505 4.27205 4.59080 4.61599 4.70191 4.71617 4.76712 4.80509 4.97626 5.00345 5.04215 5.08549 5.09188 5.11663 5.21414 5.36404 5.43189 5.47467 5.50891 5.53196 5.66743 5.80878 5.88630 5.94521 5.96393 6.15503 6.49935 7.00438 7.32221 7.44424 7.56382 7.81179 7.98463 8.31962 8.42643 9.20959 10.83097 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.035298 B = 0.001806 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.064790 B =15496.696690 C =15846.915646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 N -0.610 5.610 4 C 0.538 3.462 5 O -0.509 6.509 6 C -0.150 4.150 7 S -0.061 6.061 8 C -0.537 4.537 9 H 0.072 0.928 10 C 0.075 3.925 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.120 3.880 17 C 0.091 3.909 18 N -0.648 5.648 19 C 0.545 3.455 20 O -0.491 6.491 21 C -0.158 4.158 22 C 0.510 3.490 23 O -0.491 6.491 24 N -0.741 5.741 25 C 0.089 3.911 26 C 0.084 3.916 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.269 0.731 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.401 0.599 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 -6.630 26.709 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.022 4.022 3 N -0.345 5.345 4 C 0.326 3.674 5 O -0.382 6.382 6 C -0.301 4.301 7 S 0.166 5.834 8 C -0.685 4.685 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.744 3.256 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.014 3.986 17 C -0.033 4.033 18 N -0.387 5.387 19 C 0.332 3.668 20 O -0.363 6.363 21 C -0.201 4.201 22 C 0.293 3.707 23 O -0.363 6.363 24 N -0.395 5.395 25 C -0.055 4.055 26 C -0.040 4.040 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.234 0.766 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.525 -4.766 27.214 28.634 hybrid contribution -1.668 -2.133 -0.988 2.883 sum -9.193 -6.899 26.225 28.634 Atomic orbital electron populations 1.22327 0.95641 1.02466 1.03029 1.21592 0.94706 0.82350 1.03519 1.47890 1.67769 1.14194 1.04689 1.20410 0.76928 0.85660 0.84423 1.90718 1.41158 1.19735 1.86614 1.23604 1.04631 1.04803 0.97042 1.85437 1.82033 1.22430 0.93545 1.22806 1.48170 1.05146 0.92350 0.90964 1.24985 0.94771 0.95393 0.98348 1.70004 1.41422 1.16978 1.21796 0.86234 0.79116 0.79880 0.80324 1.19946 1.20810 1.19931 1.22735 0.94695 0.99352 0.81830 1.23505 0.97378 1.01708 0.80746 1.49330 1.11354 1.72395 1.05614 1.19395 0.90257 0.77454 0.79697 1.90894 1.22963 1.48154 1.74279 1.21504 0.99143 1.06351 0.93070 1.20024 0.86950 0.77639 0.86057 1.90890 1.14852 1.46722 1.83802 1.45773 1.09896 1.75454 1.08390 1.21518 1.00065 1.01966 0.81952 1.23679 0.90599 1.02408 0.87291 0.92302 0.91516 0.91405 0.89433 0.90514 0.89180 0.88992 0.92096 0.84911 0.89628 0.89508 0.85956 0.86102 0.76610 0.92181 0.90610 0.92221 0.88748 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.93 37.15 0.37 -0.92 16 2 C 0.10 0.86 5.05 -4.04 -0.02 0.84 16 3 N -0.61 -7.24 2.70 -165.72 -0.45 -7.69 16 4 C 0.54 9.27 7.68 -10.98 -0.08 9.19 16 5 O -0.51 -10.88 15.46 5.55 0.09 -10.80 16 6 C -0.15 -2.83 4.84 36.01 0.17 -2.65 16 7 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 8 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 9 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 10 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 11 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 12 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 C 0.12 1.25 4.49 -67.67 -0.30 0.94 16 17 C 0.09 0.96 8.19 -8.51 -0.07 0.89 16 18 N -0.65 -6.32 3.69 -185.07 -0.68 -7.00 16 19 C 0.54 6.32 8.07 -10.99 -0.09 6.23 16 20 O -0.49 -8.43 14.95 -18.96 -0.28 -8.71 16 21 C -0.16 -1.04 6.01 -29.04 -0.17 -1.21 16 22 C 0.51 4.84 7.82 -10.98 -0.09 4.75 16 23 O -0.49 -7.56 14.18 -18.96 -0.27 -7.83 16 24 N -0.74 -4.05 5.71 -67.08 -0.38 -4.43 16 25 C 0.09 0.46 10.70 59.85 0.64 1.10 16 26 C 0.08 0.57 6.97 -8.37 -0.06 0.52 16 27 H 0.06 0.35 6.44 -51.93 -0.33 0.02 16 28 H 0.07 0.63 6.92 -51.93 -0.36 0.27 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.79 6.48 -51.93 -0.34 0.46 16 31 H 0.08 0.48 6.22 -51.93 -0.32 0.16 16 32 H 0.09 1.56 7.24 -51.92 -0.38 1.19 16 33 H 0.09 1.58 6.92 -51.91 -0.36 1.22 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.13 1.63 7.44 -51.93 -0.39 1.25 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 0.82 7.37 -51.93 -0.38 0.44 16 38 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.40 0.70 8.83 -40.82 -0.36 0.33 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.49 5.33 -51.93 -0.28 0.21 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -40.74 386.57 -8.58 -49.32 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.42 Total: -2.96 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 0.50 Total: 7.14 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.78 Total: -44.06 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.47 Total: -27.33 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -40.74 -8.58 -49.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079341930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.382 kcal (2) G-P(sol) polarization free energy of solvation -40.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds