Wall clock time and date at job start Wed Apr 1 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47101 * 2 1 4 4 C 1.34774 * 119.99953 * 269.99905 * 3 2 1 5 5 O 1.21287 * 119.99586 * 185.37272 * 4 3 2 6 6 C 1.50699 * 120.00316 * 5.37571 * 4 3 2 7 7 C 1.50695 * 109.47193 * 180.02562 * 6 4 3 8 8 O 1.21284 * 120.00088 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99797 * 180.02562 * 7 6 4 10 10 C 1.46503 * 119.99665 * 179.97438 * 9 7 6 11 11 C 1.46508 * 119.99847 * 89.99986 * 3 2 1 12 12 C 1.53491 * 114.20556 * 65.64017 * 11 3 2 13 13 N 1.47069 * 87.98357 * 220.14953 * 12 11 3 14 14 C 1.34779 * 136.05315 * 207.08846 * 13 12 11 15 15 O 1.21281 * 120.00388 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99873 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47434 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00086 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99719 * 179.72844 * 18 17 16 21 21 N 1.31627 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46906 * 59.99702 * 22 20 18 24 24 H 1.48490 * 109.47193 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46566 * 299.99935 * 22 20 18 26 26 C 1.47057 * 87.88679 * 27.34429 * 13 12 11 27 27 H 1.08998 * 109.46884 * 300.00327 * 1 2 3 28 28 H 1.09000 * 109.46871 * 60.00049 * 1 2 3 29 29 H 1.08998 * 109.47286 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47043 * 240.00187 * 2 1 3 31 31 H 1.09000 * 109.46871 * 119.99951 * 2 1 3 32 32 H 1.09002 * 109.46494 * 300.00112 * 6 4 3 33 33 H 1.09001 * 109.46773 * 59.99860 * 6 4 3 34 34 H 0.96999 * 120.00098 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47019 * 299.99503 * 10 9 7 36 36 H 1.09001 * 109.47399 * 60.00086 * 10 9 7 37 37 H 1.09006 * 109.46883 * 179.97438 * 10 9 7 38 38 H 1.09000 * 113.27891 * 198.70701 * 11 3 2 39 39 H 1.08999 * 113.47047 * 105.36827 * 12 11 3 40 40 H 1.09000 * 113.52064 * 334.93485 * 12 11 3 41 41 H 1.09008 * 109.46904 * 59.99839 * 16 14 13 42 42 H 1.08995 * 109.47375 * 300.00175 * 16 14 13 43 43 H 0.97008 * 120.00139 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.47010 * 87.43772 * 26 13 12 45 45 H 1.09000 * 113.46644 * 217.88393 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.7387 3.1235 -1.1694 6 6 1.8783 1.3516 -2.4694 7 6 2.2293 2.2651 -3.6154 8 8 2.7263 3.3495 -3.3963 9 7 1.9900 1.8773 -4.8839 10 6 2.3307 2.7656 -5.9979 11 6 2.2626 2.0718 1.2688 12 6 3.4031 1.4719 2.1025 13 7 2.5769 1.6955 3.2985 14 6 2.8051 1.9094 4.6095 15 8 3.9426 1.9481 5.0287 16 6 1.6470 2.1007 5.5545 17 16 2.2740 2.3642 7.2319 18 6 0.7529 2.5522 8.1011 19 1 -0.1846 2.4895 7.5687 20 6 0.7595 2.7757 9.4710 21 7 1.9021 2.8468 10.1207 22 14 -0.8530 2.9757 10.3925 23 1 -1.6698 1.7458 10.2336 24 1 -0.5749 3.2019 11.8335 25 1 -1.5963 4.1380 9.8429 26 6 1.3921 1.5766 2.4355 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.4310 0.4173 -2.5675 33 1 0.8083 1.1441 -2.4842 34 1 1.5922 1.0102 -5.0591 35 1 1.7783 3.7000 -5.8996 36 1 3.4008 2.9728 -5.9833 37 1 2.0670 2.2846 -6.9399 38 1 2.3053 3.1563 1.1677 39 1 4.3140 2.0703 2.0862 40 1 3.5874 0.4182 1.8931 41 1 1.0147 1.2128 5.5387 42 1 1.0638 2.9675 5.2439 43 1 1.9067 3.0026 11.0782 44 1 1.0454 0.5504 2.3133 45 1 0.5897 2.2642 2.7027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079659536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:42 Heat of formation + Delta-G solvation = -50.937276 kcal Electronic energy + Delta-G solvation = -27169.246484 eV Core-core repulsion = 23122.424712 eV Total energy + Delta-G solvation = -4046.821772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23184 -40.18756 -38.89783 -37.54939 -35.73740 -34.88281 -32.43576 -31.62783 -31.06454 -30.07727 -27.89131 -26.72103 -26.04678 -25.43292 -24.01401 -22.63272 -20.94972 -19.43675 -19.14146 -18.14453 -17.70449 -17.25569 -16.93813 -16.57193 -16.43064 -15.85788 -15.52789 -15.02360 -14.84548 -14.80779 -14.33583 -14.18929 -13.98376 -13.82491 -13.72784 -13.39635 -13.06413 -12.85225 -12.80651 -12.73041 -12.68602 -12.50385 -12.39819 -12.11436 -11.75214 -11.60562 -11.17776 -11.04373 -11.03683 -10.77976 -10.47579 -9.84315 -9.76891 -9.55525 -9.45241 -9.06673 -9.04014 -8.64513 -8.25473 -6.51509 -6.21873 -3.93152 2.17572 2.20049 2.37682 2.72602 2.91881 3.09962 3.23197 3.25398 3.28913 3.56065 3.89904 4.08637 4.19474 4.28419 4.33961 4.49182 4.56186 4.67927 4.74206 4.78383 4.81743 4.92157 4.97500 5.07299 5.13157 5.16927 5.21127 5.27668 5.31812 5.36753 5.48887 5.61150 5.69239 5.74932 5.87408 5.91869 5.92650 6.11838 6.18193 6.91918 7.02539 7.58594 7.78428 7.80026 7.95083 8.34391 8.49727 9.23012 10.85481 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.001851 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.816670 B =15120.790452 C =15417.856390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 N -0.605 5.605 4 C 0.517 3.483 5 O -0.486 6.486 6 C -0.164 4.164 7 C 0.508 3.492 8 O -0.490 6.490 9 N -0.741 5.741 10 C 0.089 3.911 11 C 0.114 3.886 12 C 0.092 3.908 13 N -0.649 5.649 14 C 0.566 3.434 15 O -0.510 6.510 16 C -0.144 4.144 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.090 3.910 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.400 0.600 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.090 0.910 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -10.274 -33.113 35.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.026 4.026 3 N -0.340 5.340 4 C 0.302 3.698 5 O -0.357 6.357 6 C -0.207 4.207 7 C 0.291 3.709 8 O -0.361 6.361 9 N -0.396 5.396 10 C -0.055 4.055 11 C 0.010 3.990 12 C -0.033 4.033 13 N -0.388 5.388 14 C 0.356 3.644 15 O -0.383 6.383 16 C -0.295 4.295 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.034 4.034 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.119 -8.676 -31.885 33.191 hybrid contribution -2.715 -0.698 -0.011 2.803 sum -5.834 -9.374 -31.896 33.753 Atomic orbital electron populations 1.22347 0.95352 1.02815 1.03114 1.21670 0.94873 0.82260 1.03835 1.47873 1.66892 1.14155 1.05082 1.19948 0.79134 0.86258 0.84440 1.90897 1.39826 1.18888 1.86127 1.21676 1.05514 1.00746 0.92778 1.20072 0.79423 0.87789 0.83567 1.90898 1.40093 1.21436 1.83691 1.45783 1.66148 1.21608 1.06028 1.21518 1.01376 0.94645 0.87986 1.22955 0.96042 0.99124 0.80922 1.23342 0.96975 1.01034 0.81955 1.49359 1.10036 1.73659 1.05783 1.19924 0.90734 0.74924 0.78865 1.90729 1.23731 1.49239 1.74574 1.23477 0.99133 1.04774 1.02094 1.85429 1.11608 1.93781 0.92403 1.22812 0.92759 1.57434 0.95462 0.90952 1.24990 0.97465 0.94575 0.96493 1.70008 1.25131 1.45814 1.09267 0.86218 0.82057 0.78805 0.78381 1.19955 1.20779 1.19910 1.23508 0.91215 1.02032 0.86692 0.91481 0.92300 0.91037 0.89968 0.89577 0.86031 0.85928 0.76683 0.92194 0.92199 0.90658 0.84868 0.89861 0.90020 0.89278 0.89175 0.92092 0.89211 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.55 9.93 37.16 0.37 -0.18 16 2 C 0.10 0.37 5.05 -4.04 -0.02 0.35 16 3 N -0.60 -4.55 2.71 -165.73 -0.45 -5.00 16 4 C 0.52 4.95 7.66 -10.99 -0.08 4.87 16 5 O -0.49 -7.43 13.78 -18.96 -0.26 -7.69 16 6 C -0.16 -0.82 4.87 -29.04 -0.14 -0.96 16 7 C 0.51 4.28 7.82 -10.99 -0.09 4.20 16 8 O -0.49 -7.10 14.18 -18.96 -0.27 -7.36 16 9 N -0.74 -3.42 5.71 -67.08 -0.38 -3.80 16 10 C 0.09 0.41 10.70 59.85 0.64 1.05 16 11 C 0.11 1.14 4.49 -67.68 -0.30 0.84 16 12 C 0.09 1.08 8.19 -8.51 -0.07 1.01 16 13 N -0.65 -9.47 3.69 -185.09 -0.68 -10.15 16 14 C 0.57 11.22 8.10 -10.98 -0.09 11.13 16 15 O -0.51 -12.26 16.64 5.56 0.09 -12.17 16 16 C -0.14 -3.00 5.98 36.01 0.22 -2.78 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.09 0.89 6.97 -8.38 -0.06 0.83 16 27 H 0.07 0.30 6.44 -51.93 -0.33 -0.04 16 28 H 0.06 0.16 6.92 -51.93 -0.36 -0.20 16 29 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.12 6.48 -51.93 -0.34 -0.22 16 31 H 0.09 0.34 6.22 -51.93 -0.32 0.02 16 32 H 0.12 0.21 7.24 -51.93 -0.38 -0.17 16 33 H 0.12 0.24 6.92 -51.93 -0.36 -0.11 16 34 H 0.40 0.32 8.83 -40.82 -0.36 -0.04 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.13 1.61 7.44 -51.93 -0.39 1.22 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 0.80 7.37 -51.93 -0.38 0.42 16 41 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.09 0.67 5.33 -51.93 -0.28 0.40 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -42.21 386.57 -8.48 -50.69 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -6.42 Total: -4.70 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 0.57 Total: 7.32 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.78 Total: -44.48 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.44 Total: -27.22 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -42.21 -8.48 -50.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079659536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.246 kcal (2) G-P(sol) polarization free energy of solvation -42.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds