Wall clock time and date at job start Wed Apr 1 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47065 * 126.30198 * 2 1 4 4 C 1.54068 * 110.10629 * 150.93271 * 3 2 1 5 5 C 1.55607 * 104.29521 * 45.20153 * 4 3 2 6 6 H 1.08998 * 111.20083 * 79.96389 * 5 4 3 7 7 C 1.50694 * 111.16407 * 204.21391 * 5 4 3 8 8 O 1.21278 * 120.00303 * 27.79400 * 7 5 4 9 9 N 1.34783 * 119.99781 * 207.79419 * 7 5 4 10 10 C 1.47803 * 135.01098 * 359.96832 * 9 7 5 11 11 C 1.54657 * 85.78984 * 153.82777 * 10 9 7 12 12 H 1.08999 * 115.01375 * 139.91378 * 11 10 9 13 13 C 1.53005 * 110.83972 * 270.23324 * 11 10 9 14 14 C 1.53104 * 109.44587 * 143.89210 * 13 11 10 15 15 N 1.46617 * 108.00994 * 301.02015 * 14 13 11 16 16 C 1.36930 * 119.89245 * 237.30766 * 15 14 13 17 17 H 1.08003 * 120.00638 * 151.35362 * 16 15 14 18 18 C 1.38817 * 119.99887 * 331.35158 * 16 15 14 19 19 N 1.31623 * 120.00395 * 159.93771 * 18 16 15 20 20 Si 1.86799 * 119.99885 * 339.93602 * 18 16 15 21 21 H 1.48499 * 109.47128 * 95.23462 * 20 18 16 22 22 H 1.48496 * 109.47367 * 335.22874 * 20 18 16 23 23 H 1.48505 * 109.47147 * 215.23193 * 20 18 16 24 24 C 1.45678 * 120.21648 * 57.57911 * 15 14 13 25 25 C 1.46818 * 135.01147 * 180.02562 * 9 7 5 26 26 H 1.08998 * 111.56425 * 94.45890 * 25 9 7 27 27 S 1.67003 * 126.29887 * 179.97438 * 2 1 3 28 28 O 1.42099 * 105.13467 * 68.63670 * 27 2 1 29 29 O 1.42096 * 105.27026 * 299.00584 * 27 2 1 30 30 H 1.08995 * 109.47483 * 270.04377 * 1 2 3 31 31 H 1.08999 * 109.47327 * 30.04445 * 1 2 3 32 32 H 1.09007 * 109.47250 * 150.04184 * 1 2 3 33 33 H 1.08991 * 109.35596 * 271.11475 * 3 2 1 34 34 H 1.09005 * 109.35355 * 30.82048 * 3 2 1 35 35 H 1.09002 * 110.46649 * 286.49777 * 4 3 2 36 36 H 1.09000 * 110.46517 * 163.90449 * 4 3 2 37 37 H 1.08997 * 113.82088 * 39.61581 * 10 9 7 38 38 H 1.08996 * 113.82397 * 268.04423 * 10 9 7 39 39 H 1.09000 * 109.47892 * 23.89915 * 13 11 10 40 40 H 1.09004 * 109.47842 * 263.88681 * 13 11 10 41 41 H 1.09004 * 109.75086 * 181.39519 * 14 13 11 42 42 H 1.09001 * 109.79660 * 60.67897 * 14 13 11 43 43 H 0.96992 * 120.00615 * 180.02562 * 19 18 16 44 44 H 1.09002 * 108.71289 * 81.49684 * 24 15 14 45 45 H 1.08994 * 108.71611 * 199.51499 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3357 1.1852 0.0000 4 6 3.6684 0.8634 0.7029 5 6 4.0862 -0.5177 0.1204 6 1 4.5450 -0.4086 -0.8623 7 6 5.0013 -1.2525 1.0657 8 8 4.9323 -1.0472 2.2590 9 7 5.8966 -2.1380 0.5850 10 6 6.2586 -2.6331 -0.7598 11 6 7.6525 -2.9200 -0.1542 12 1 8.1123 -3.8537 -0.4778 13 6 8.5713 -1.7057 -0.3037 14 6 9.4691 -1.5908 0.9312 15 7 8.6057 -1.4562 2.1085 16 6 8.7365 -0.3684 2.9299 17 1 7.8841 -0.0049 3.4846 18 6 9.9648 0.2671 3.0497 19 7 10.0253 1.5035 3.4971 20 14 11.5320 -0.6323 2.5759 21 1 11.8958 -0.2898 1.1775 22 1 11.3147 -2.0972 2.6862 23 1 12.6314 -0.2250 3.4873 24 6 7.6132 -2.4788 2.4105 25 6 6.9158 -3.0112 1.1802 26 1 6.5293 -4.0147 1.3580 27 16 2.4536 -1.3459 0.0006 28 8 2.2706 -1.9413 -1.2766 29 8 2.1395 -2.0405 1.1998 30 1 -0.3634 0.0008 1.0276 31 1 -0.3634 0.8896 -0.5145 32 1 -0.3634 -0.8904 -0.5132 33 1 2.5334 1.4882 -1.0281 34 1 1.8378 1.9992 0.5269 35 1 3.5237 0.7943 1.7811 36 1 4.4168 1.6194 0.4654 37 1 6.2630 -1.8592 -1.5274 38 1 5.7160 -3.5295 -1.0597 39 1 7.9679 -0.8030 -0.3995 40 1 9.1900 -1.8253 -1.1930 41 1 10.1088 -0.7128 0.8411 42 1 10.0837 -2.4861 1.0253 43 1 10.8835 1.9477 3.5805 44 1 8.1069 -3.3051 2.9220 45 1 6.8654 -2.0536 3.0798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084715113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:28 Heat of formation + Delta-G solvation = -11.564823 kcal Electronic energy + Delta-G solvation = -30081.805047 eV Core-core repulsion = 26036.690592 eV Total energy + Delta-G solvation = -4045.114455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.81592 -38.54376 -37.26992 -37.11243 -36.13315 -35.62515 -33.28726 -31.98976 -31.20208 -29.80352 -27.75409 -27.20294 -25.71169 -23.82110 -23.63029 -22.40221 -21.35894 -20.42361 -19.19600 -18.15269 -17.45853 -17.44568 -17.04503 -16.53637 -16.07957 -15.72289 -15.44602 -15.25126 -15.04553 -14.64530 -13.95471 -13.80097 -13.69050 -13.67420 -13.42034 -13.24750 -13.20704 -12.84237 -12.61309 -12.31249 -12.29695 -12.19415 -12.18275 -11.93290 -11.66463 -11.48147 -11.39734 -11.23512 -10.96555 -10.79717 -10.73216 -10.35636 -10.02250 -9.75916 -9.44855 -9.39808 -9.33446 -8.71941 -8.44592 -6.93657 -5.90967 -3.27872 -0.18724 2.18979 2.66452 2.78691 3.30397 3.32765 3.48643 3.51054 3.60159 3.94595 4.17897 4.39892 4.40985 4.54124 4.65012 4.78797 4.88606 4.93301 4.96498 5.12877 5.21699 5.26070 5.32976 5.36836 5.40425 5.43626 5.48898 5.57910 5.61639 5.72750 5.73988 5.81570 5.91742 6.11924 6.19329 6.23237 6.29273 6.54851 6.59292 6.76835 6.88283 7.80428 8.04642 8.22395 8.40436 9.01403 9.76370 10.09838 11.25097 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.003740 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.626714 B = 7484.178767 C = 8185.817636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.998 5.998 3 C 0.081 3.919 4 C -0.110 4.110 5 C -0.587 4.587 6 H 0.160 0.840 7 C 0.563 3.437 8 O -0.495 6.495 9 N -0.630 5.630 10 C 0.085 3.915 11 C -0.106 4.106 12 H 0.096 0.904 13 C -0.119 4.119 14 C 0.126 3.874 15 N -0.597 5.597 16 C -0.254 4.254 17 H 0.086 0.914 18 C 0.022 3.978 19 N -0.910 5.910 20 Si 0.883 3.117 21 H -0.291 1.291 22 H -0.270 1.270 23 H -0.304 1.304 24 C 0.142 3.858 25 C 0.132 3.868 26 H 0.086 0.914 27 S 2.588 3.412 28 O -0.951 6.951 29 O -0.936 6.936 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.029 0.971 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.781 -4.348 -13.475 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.842 5.842 3 C -0.045 4.045 4 C -0.149 4.149 5 C -0.699 4.699 6 H 0.178 0.822 7 C 0.348 3.652 8 O -0.369 6.369 9 N -0.367 5.367 10 C -0.038 4.038 11 C -0.125 4.125 12 H 0.114 0.886 13 C -0.158 4.158 14 C 0.001 3.999 15 N -0.321 5.321 16 C -0.382 4.382 17 H 0.103 0.897 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.713 3.287 21 H -0.219 1.219 22 H -0.194 1.194 23 H -0.233 1.233 24 C 0.015 3.985 25 C 0.028 3.972 26 H 0.104 0.896 27 S 2.681 3.319 28 O -0.941 6.941 29 O -0.925 6.925 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.285 -4.916 -12.706 20.475 hybrid contribution 1.318 0.310 -0.460 1.430 sum -13.967 -4.606 -13.165 19.739 Atomic orbital electron populations 1.21229 0.75770 1.02914 1.01845 1.57112 1.13809 1.21413 1.91840 1.22145 0.89788 0.90654 1.01909 1.22718 0.96125 0.93018 1.03087 1.30879 1.19159 1.10860 1.08994 0.82222 1.18281 0.79777 0.79605 0.87547 1.90773 1.67632 1.63492 1.14957 1.49789 1.35813 1.40587 1.10496 1.23783 0.94782 0.98955 0.86265 1.22873 0.94209 1.00323 0.95097 0.88634 1.21885 0.98278 0.96316 0.99338 1.21241 0.92692 0.99741 0.86235 1.43817 1.39454 1.23334 1.25452 1.18962 0.95466 1.02540 1.21246 0.89671 1.25281 0.97339 0.96228 0.98754 1.69835 1.25038 1.10437 1.49982 0.86940 0.84295 0.81043 0.76377 1.21872 1.19448 1.23265 1.20304 0.92623 0.92275 0.93307 1.22545 0.85583 0.92481 0.96566 0.89609 1.06138 0.76899 0.73663 0.75189 1.93605 1.83794 1.74445 1.42212 1.93645 1.80825 1.70611 1.47399 0.92399 0.90657 0.91362 0.90491 0.88361 0.86978 0.86254 0.89735 0.89402 0.91366 0.92094 0.90729 0.95321 0.92884 0.95308 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.00 11.38 59.85 0.68 1.68 16 2 N -1.00 -10.38 3.72 -120.71 -0.45 -10.83 16 3 C 0.08 0.66 6.82 -3.18 -0.02 0.64 16 4 C -0.11 -1.21 6.14 -24.79 -0.15 -1.36 16 5 C -0.59 -7.51 3.56 -26.50 -0.09 -7.60 16 6 H 0.16 1.54 7.74 -51.93 -0.40 1.13 16 7 C 0.56 9.86 6.97 -10.99 -0.08 9.78 16 8 O -0.50 -10.72 15.07 5.56 0.08 -10.63 16 9 N -0.63 -10.08 3.35 -173.80 -0.58 -10.66 16 10 C 0.08 0.99 7.81 -3.00 -0.02 0.96 16 11 C -0.11 -1.41 4.39 -89.96 -0.40 -1.81 16 12 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 13 C -0.12 -1.91 5.66 -26.67 -0.15 -2.06 16 14 C 0.13 2.64 4.15 -3.92 -0.02 2.62 16 15 N -0.60 -14.21 2.76 -174.87 -0.48 -14.70 16 16 C -0.25 -7.24 9.96 -15.06 -0.15 -7.39 16 17 H 0.09 2.71 8.02 -52.48 -0.42 2.29 16 18 C 0.02 0.65 5.22 -17.43 -0.09 0.56 16 19 N -0.91 -28.13 13.97 55.49 0.78 -27.35 16 20 Si 0.88 22.21 24.37 -169.99 -4.14 18.07 16 21 H -0.29 -6.99 6.71 56.52 0.38 -6.61 16 22 H -0.27 -6.60 6.55 56.52 0.37 -6.23 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 24 C 0.14 2.93 6.19 -5.44 -0.03 2.89 16 25 C 0.13 2.12 4.23 -69.41 -0.29 1.83 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 27 S 2.59 34.96 5.83 -107.50 -0.63 34.33 16 28 O -0.95 -14.05 18.13 -57.43 -1.04 -15.09 16 29 O -0.94 -16.25 17.75 -57.43 -1.02 -17.26 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 1.46 7.28 -51.93 -0.38 1.08 16 36 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.73 4.30 -51.93 -0.22 1.51 16 42 H 0.03 0.58 7.21 -51.93 -0.37 0.20 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.92 6.36 -51.93 -0.33 1.59 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -38.96 362.08 -9.62 -48.58 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.77 Total: -0.65 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.82 Total: 0.75 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.74 Total: -63.54 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.98 Total: -42.99 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Atomic # 16 Polarization: 34.96 SS G_CDS: -0.63 Total: 34.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.96 -9.62 -48.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084715113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.013 kcal (2) G-P(sol) polarization free energy of solvation -38.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds