Wall clock time and date at job start Wed Apr 1 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.47063 * 126.30135 * 2 1 4 4 C 1.54068 * 110.10512 * 208.99094 * 3 2 1 5 5 C 1.55598 * 104.29587 * 314.79732 * 4 3 2 6 6 H 1.09009 * 111.16421 * 280.00899 * 5 4 3 7 7 C 1.50702 * 111.16715 * 155.78635 * 5 4 3 8 8 O 1.21283 * 119.99853 * 330.00103 * 7 5 4 9 9 N 1.34776 * 120.00075 * 149.99811 * 7 5 4 10 10 C 1.46502 * 119.99894 * 180.02562 * 9 7 5 11 11 H 1.08998 * 110.68711 * 32.01187 * 10 9 7 12 12 C 1.55551 * 110.58052 * 268.93362 * 10 9 7 13 13 C 1.55847 * 103.37709 * 241.43776 * 12 10 9 14 14 H 1.09007 * 116.12785 * 159.34435 * 13 12 10 15 15 C 1.55844 * 105.06583 * 288.36599 * 13 12 10 16 16 C 1.54856 * 103.58498 * 71.90507 * 15 13 12 17 17 C 1.55839 * 103.44522 * 359.92300 * 16 15 13 18 18 H 1.09003 * 115.56124 * 158.80781 * 17 16 15 19 19 N 1.50233 * 101.05359 * 32.93682 * 17 16 15 20 20 C 1.36937 * 130.84345 * 126.04809 * 19 17 16 21 21 H 1.08005 * 119.99885 * 4.67580 * 20 19 17 22 22 C 1.38809 * 120.00285 * 184.68403 * 20 19 17 23 23 N 1.31619 * 120.00051 * 8.87268 * 22 20 19 24 24 Si 1.86807 * 120.00019 * 188.87555 * 22 20 19 25 25 H 1.48503 * 109.47040 * 94.30662 * 24 22 20 26 26 H 1.48502 * 109.47183 * 214.30792 * 24 22 20 27 27 H 1.48501 * 109.46906 * 334.31001 * 24 22 20 28 28 S 1.67000 * 126.30142 * 179.97438 * 2 1 3 29 29 O 1.42102 * 105.13372 * 61.11391 * 28 2 1 30 30 O 1.42101 * 105.13904 * 291.43793 * 28 2 1 31 31 H 1.09005 * 109.47171 * 0.03017 * 1 2 3 32 32 H 1.09005 * 109.46983 * 120.02925 * 1 2 3 33 33 H 1.09000 * 109.47223 * 240.02714 * 1 2 3 34 34 H 1.08996 * 109.36063 * 88.81330 * 3 2 1 35 35 H 1.09001 * 109.35445 * 329.16737 * 3 2 1 36 36 H 1.09001 * 110.46699 * 196.09416 * 4 3 2 37 37 H 1.08997 * 110.57409 * 73.55665 * 4 3 2 38 38 H 0.97005 * 120.00126 * 0.02562 * 9 7 5 39 39 H 1.09001 * 110.49335 * 123.04984 * 12 10 9 40 40 H 1.09001 * 110.96005 * 0.04607 * 12 10 9 41 41 H 1.09005 * 110.62709 * 313.33842 * 15 13 12 42 42 H 1.08994 * 110.62980 * 190.47805 * 15 13 12 43 43 H 1.09004 * 110.62462 * 118.41349 * 16 15 13 44 44 H 1.09004 * 110.62822 * 241.27128 * 16 15 13 45 45 H 0.97007 * 119.99728 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3356 1.1852 0.0000 4 6 3.6690 0.8628 -0.7012 5 6 4.0863 -0.5178 -0.1172 6 1 4.5444 -0.4071 0.8657 7 6 5.0025 -1.2534 -1.0609 8 8 4.9076 -1.0789 -2.2574 9 7 5.9272 -2.1051 -0.5754 10 6 6.8182 -2.8198 -1.4928 11 1 7.0276 -2.2153 -2.3752 12 6 6.2019 -4.1895 -1.8975 13 6 7.2416 -5.2230 -1.3687 14 1 6.8764 -6.2397 -1.2229 15 6 8.4721 -5.0798 -2.3143 16 6 9.0857 -3.7170 -1.9089 17 6 8.1421 -3.2182 -0.7735 18 1 8.5673 -2.4716 -0.1026 19 7 7.7438 -4.5196 -0.1373 20 6 7.8162 -4.9394 1.1641 21 1 8.1442 -4.2569 1.9342 22 6 7.4683 -6.2422 1.4935 23 7 7.2380 -7.1224 0.5425 24 14 7.3270 -6.7462 3.2868 25 1 5.9145 -6.6184 3.7270 26 1 7.7680 -8.1558 3.4410 27 1 8.1862 -5.8650 4.1178 28 16 2.4536 -1.3459 0.0006 29 8 2.1392 -2.0377 -1.2002 30 8 2.2693 -1.9412 1.2777 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3633 -0.5143 -0.8898 33 1 -0.3634 -0.5134 0.8902 34 1 2.5324 1.4890 1.0281 35 1 1.8378 1.9991 -0.5271 36 1 4.4172 1.6190 -0.4636 37 1 3.5277 0.7934 -1.7798 38 1 6.0029 -2.2449 0.3816 39 1 6.1073 -4.2601 -2.9811 40 1 5.2344 -4.3386 -1.4182 41 1 8.1552 -5.0632 -3.3571 42 1 9.1838 -5.8875 -2.1434 43 1 10.1008 -3.8492 -1.5343 44 1 9.0757 -3.0255 -2.7515 45 1 6.9945 -8.0327 0.7727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098016802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:07 Heat of formation + Delta-G solvation = -41.389956 kcal Electronic energy + Delta-G solvation = -29638.412341 eV Core-core repulsion = 25592.004571 eV Total energy + Delta-G solvation = -4046.407769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.04669 -38.69585 -37.29954 -37.14735 -36.00993 -33.99407 -33.30206 -32.52624 -29.20963 -29.11397 -28.45148 -27.21573 -25.72261 -24.21467 -22.86508 -21.46554 -20.27873 -19.87117 -19.12104 -18.68452 -17.75054 -17.39553 -17.02156 -16.83730 -16.03733 -15.55757 -15.27830 -14.86847 -14.69464 -14.37033 -14.19655 -13.87611 -13.65102 -13.57661 -13.41552 -13.16301 -12.89235 -12.28380 -12.17427 -12.08461 -12.06643 -11.86652 -11.75390 -11.37729 -11.34064 -11.17349 -10.95435 -10.89539 -10.76941 -10.57498 -10.38316 -10.09518 -10.02451 -9.93139 -9.36601 -9.32109 -9.18981 -8.91511 -8.66842 -6.97353 -5.78187 -3.15336 -0.12971 2.25108 2.65264 3.08988 3.37728 3.42413 3.43160 3.45202 3.56200 4.14231 4.23165 4.40084 4.56104 4.60118 4.86745 4.90386 5.07957 5.19289 5.24144 5.31004 5.32235 5.45111 5.53913 5.58513 5.60698 5.63945 5.83943 6.00667 6.02272 6.10753 6.21357 6.22598 6.37760 6.43590 6.55711 6.69221 6.79207 6.90556 7.01103 7.28239 7.45091 7.70079 7.77106 8.11429 8.28270 9.03342 9.68219 10.48758 11.32460 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.003960 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.877742 B = 7068.305963 C = 8307.821531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.999 5.999 3 C 0.081 3.919 4 C -0.109 4.109 5 C -0.600 4.600 6 H 0.164 0.836 7 C 0.533 3.467 8 O -0.521 6.521 9 N -0.698 5.698 10 C 0.127 3.873 11 H 0.086 0.914 12 C -0.148 4.148 13 C 0.156 3.844 14 H 0.149 0.851 15 C -0.136 4.136 16 C -0.128 4.128 17 C 0.125 3.875 18 H 0.090 0.910 19 N -0.591 5.591 20 C -0.221 4.221 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.915 5.915 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 S 2.590 3.410 29 O -0.931 6.931 30 O -0.942 6.942 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.406 0.594 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 18.035 -1.996 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.843 5.843 3 C -0.045 4.045 4 C -0.148 4.148 5 C -0.711 4.711 6 H 0.182 0.818 7 C 0.315 3.685 8 O -0.397 6.397 9 N -0.348 5.348 10 C 0.021 3.979 11 H 0.104 0.896 12 C -0.188 4.188 13 C 0.049 3.951 14 H 0.166 0.834 15 C -0.175 4.175 16 C -0.168 4.168 17 C 0.017 3.983 18 H 0.108 0.892 19 N -0.312 5.312 20 C -0.349 4.349 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.562 5.562 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 S 2.682 3.318 29 O -0.920 6.920 30 O -0.931 6.931 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.241 0.759 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.437 16.933 -2.539 19.088 hybrid contribution 0.419 0.359 1.479 1.579 sum -8.018 17.293 -1.060 19.090 Atomic orbital electron populations 1.21286 0.75771 1.03412 1.01693 1.57185 1.13863 1.21363 1.91887 1.22123 0.89824 0.90707 1.01837 1.22671 0.96305 0.92928 1.02909 1.30982 1.20273 1.10774 1.09046 0.81812 1.18859 0.81573 0.80115 0.87995 1.90718 1.69506 1.64679 1.14800 1.46065 1.34517 1.42518 1.11693 1.22936 0.90656 0.92425 0.91891 0.89598 1.23621 1.00298 0.95607 0.99295 1.23670 0.89907 0.98201 0.83292 0.83422 1.23034 1.00151 0.96288 0.98042 1.22879 0.98923 0.97479 0.97504 1.23152 0.91654 0.90591 0.92947 0.89242 1.46632 1.70552 1.10221 1.03837 1.18994 1.38967 0.95162 0.81779 0.90328 1.24719 1.02440 0.95546 0.97635 1.69581 1.52949 1.03506 1.30130 0.86104 0.77884 0.77731 0.84044 1.21493 1.21741 1.20681 1.06178 0.76755 0.73526 0.75366 1.93650 1.80642 1.70296 1.47380 1.93641 1.83425 1.73969 1.42084 0.90152 0.91891 0.92003 0.90547 0.88606 0.86772 0.87198 0.75891 0.92258 0.92148 0.93347 0.92372 0.92363 0.93009 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.99 11.40 59.84 0.68 1.67 16 2 N -1.00 -10.30 3.72 -120.71 -0.45 -10.75 16 3 C 0.08 0.56 6.81 -3.18 -0.02 0.54 16 4 C -0.11 -0.90 6.16 -24.79 -0.15 -1.06 16 5 C -0.60 -6.99 3.71 -26.50 -0.10 -7.09 16 6 H 0.16 1.37 8.14 -51.92 -0.42 0.95 16 7 C 0.53 8.50 6.78 -10.98 -0.07 8.43 16 8 O -0.52 -9.73 15.62 5.56 0.09 -9.65 16 9 N -0.70 -11.68 5.09 -51.03 -0.26 -11.94 16 10 C 0.13 2.32 2.83 -65.05 -0.18 2.14 16 11 H 0.09 1.53 7.23 -51.93 -0.38 1.16 16 12 C -0.15 -3.05 6.25 -23.85 -0.15 -3.20 16 13 C 0.16 3.55 4.69 -62.68 -0.29 3.26 16 14 H 0.15 3.87 5.68 -51.92 -0.29 3.58 16 15 C -0.14 -2.69 6.43 -24.23 -0.16 -2.85 16 16 C -0.13 -2.29 6.44 -24.24 -0.16 -2.44 16 17 C 0.13 2.38 5.06 -62.81 -0.32 2.06 16 18 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 19 N -0.59 -13.90 2.98 -145.66 -0.43 -14.33 16 20 C -0.22 -5.75 10.56 -15.06 -0.16 -5.91 16 21 H 0.08 1.96 7.84 -52.48 -0.41 1.54 16 22 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 23 N -0.91 -25.81 10.60 55.49 0.59 -25.22 16 24 Si 0.91 21.57 29.56 -169.99 -5.03 16.54 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 S 2.59 37.43 5.83 -107.50 -0.63 36.80 16 29 O -0.93 -17.19 17.75 -57.41 -1.02 -18.20 16 30 O -0.94 -16.21 18.14 -57.41 -1.04 -17.25 16 31 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.11 1.08 7.29 -51.93 -0.38 0.70 16 38 H 0.41 6.42 8.66 -40.82 -0.35 6.06 16 39 H 0.06 1.14 7.82 -51.93 -0.41 0.73 16 40 H 0.06 1.35 8.00 -51.93 -0.42 0.93 16 41 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -35.60 371.06 -10.57 -46.17 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.81 Total: 6.96 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.18 Total: -4.73 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.55 Total: -62.24 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.97 Total: -45.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 37.43 SS G_CDS: -0.63 Total: 36.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.60 -10.57 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098016802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.784 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds