Wall clock time and date at job start Wed Apr 1 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45203 * 109.46900 * 2 1 4 4 C 1.34233 * 116.99518 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00127 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99745 * 180.02562 * 4 3 2 7 7 N 1.46902 * 109.47091 * 179.97438 * 6 4 3 8 8 C 1.46899 * 110.99961 * 293.95603 * 7 6 4 9 9 C 1.50697 * 109.47121 * 298.75940 * 8 7 6 10 10 H 1.08002 * 120.00093 * 4.34467 * 9 8 7 11 11 C 1.37877 * 120.00118 * 184.33898 * 9 8 7 12 12 N 1.31519 * 119.99786 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00216 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47302 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47575 * 119.99676 * 13 11 9 16 16 H 1.48506 * 109.47297 * 240.00191 * 13 11 9 17 17 C 1.46899 * 110.99948 * 169.99861 * 7 6 4 18 18 C 1.50695 * 109.47015 * 199.66720 * 17 7 6 19 19 C 1.38366 * 120.02707 * 263.12362 * 18 17 7 20 20 F 1.35100 * 120.00384 * 0.02562 * 19 18 17 21 21 C 1.38646 * 119.98468 * 179.79280 * 19 18 17 22 22 F 1.35101 * 119.98146 * 180.23162 * 21 19 18 23 23 C 1.38411 * 120.04134 * 0.48929 * 21 19 18 24 24 C 1.38165 * 120.05401 * 359.74360 * 23 21 19 25 25 C 1.38669 * 120.02769 * 83.40359 * 18 17 7 26 26 O 1.35942 * 120.02084 * 359.95287 * 25 18 17 27 27 C 1.42903 * 117.00108 * 179.97438 * 26 25 18 28 28 H 1.09002 * 109.47094 * 299.99875 * 1 2 3 29 29 H 1.09001 * 109.47015 * 59.99634 * 1 2 3 30 30 H 1.08993 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46676 * 239.99953 * 2 1 3 32 32 H 1.09002 * 109.47040 * 119.99814 * 2 1 3 33 33 H 1.09008 * 109.47092 * 59.99695 * 6 4 3 34 34 H 1.08999 * 109.47078 * 299.99676 * 6 4 3 35 35 H 1.08993 * 109.47524 * 58.76677 * 8 7 6 36 36 H 1.08999 * 109.46497 * 178.76477 * 8 7 6 37 37 H 0.96994 * 119.99697 * 179.97438 * 12 11 9 38 38 H 1.09007 * 109.47285 * 319.66578 * 17 7 6 39 39 H 1.08996 * 109.46949 * 79.66148 * 17 7 6 40 40 H 1.08004 * 119.97057 * 179.72552 * 23 21 19 41 41 H 1.07998 * 119.99424 * 180.02562 * 24 23 21 42 42 H 1.09002 * 109.47090 * 60.00259 * 27 26 25 43 43 H 1.08997 * 109.47204 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.47196 * 300.00354 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3878 2.8605 -0.0001 8 6 5.8844 2.2764 1.2529 9 6 5.4714 3.1470 2.4114 10 1 4.8385 4.0058 2.2428 11 6 5.9012 2.8473 3.6867 12 7 6.6714 1.8011 3.8921 13 14 5.3887 3.9261 5.1229 14 1 4.5274 5.0307 4.6296 15 1 4.6338 3.1119 6.1090 16 1 6.5978 4.4938 5.7718 17 6 5.9842 4.1818 -0.2378 18 6 7.4063 4.0139 -0.7070 19 6 8.4497 4.1124 0.1964 20 9 8.1938 4.3586 1.4999 21 6 9.7576 3.9535 -0.2355 22 9 10.7760 4.0451 0.6475 23 6 10.0208 3.7065 -1.5717 24 6 8.9805 3.6126 -2.4761 25 6 7.6707 3.7664 -2.0456 26 8 6.6471 3.6740 -2.9353 27 6 6.9930 3.4180 -4.2980 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5852 3.4691 0.8905 34 1 3.5844 3.4701 -0.8895 35 1 5.4644 1.2787 1.3803 36 1 6.9719 2.2109 1.2172 37 1 6.9741 1.5905 4.7892 38 1 5.4097 4.7080 -1.0003 39 1 5.9724 4.7575 0.6877 40 1 11.0403 3.5874 -1.9077 41 1 9.1870 3.4195 -3.5184 42 1 7.5261 2.4697 -4.3655 43 1 6.0858 3.3688 -4.9001 44 1 7.6311 4.2206 -4.6679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143418379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:26 Heat of formation + Delta-G solvation = -170.513790 kcal Electronic energy + Delta-G solvation = -31474.161667 eV Core-core repulsion = 26836.021530 eV Total energy + Delta-G solvation = -4638.140137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.88318 -47.91924 -40.07773 -39.78894 -37.26036 -36.63981 -35.51180 -32.50947 -31.71715 -31.29587 -29.35598 -27.96680 -27.32656 -26.69866 -24.52993 -23.06485 -22.24127 -22.01274 -20.81293 -19.67937 -18.15442 -17.36643 -17.30789 -16.78228 -16.42012 -16.16875 -16.02869 -15.71157 -15.41123 -15.35492 -14.73480 -14.66522 -14.56872 -14.10804 -14.08484 -13.97062 -13.40769 -13.36416 -12.92000 -12.71294 -12.49840 -12.30933 -12.27903 -12.09618 -11.86017 -11.74037 -11.35609 -11.19471 -10.99878 -10.94782 -10.77700 -10.69382 -10.61053 -10.44314 -10.09855 -9.94983 -9.68367 -9.42508 -8.53175 -8.31798 -7.91274 -7.25413 -5.94682 -4.03154 1.22187 1.31843 2.96838 3.11645 3.25478 3.31562 3.39677 3.40904 3.62358 4.24697 4.46555 4.66364 4.86017 4.90833 5.02267 5.08802 5.11703 5.14816 5.16838 5.31483 5.35366 5.39388 5.41571 5.46753 5.49202 5.79563 5.86347 5.89435 5.91032 6.02881 6.06009 6.07908 6.15481 6.24027 6.29432 6.63377 6.95868 6.96077 7.18984 7.43727 7.63190 7.92551 8.00569 8.21161 8.31236 8.54548 9.04643 9.62540 11.11261 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.005254 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.638546 B = 5328.317756 C = 8068.963096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.467 3.533 5 O -0.484 6.484 6 C 0.072 3.928 7 N -0.520 5.520 8 C 0.178 3.822 9 C -0.551 4.551 10 H 0.056 0.944 11 C 0.073 3.927 12 N -0.883 5.883 13 Si 0.882 3.118 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.283 1.283 17 C 0.105 3.895 18 C -0.106 4.106 19 C 0.133 3.867 20 F -0.096 7.096 21 C 0.018 3.982 22 F -0.134 7.134 23 C -0.092 4.092 24 C -0.205 4.205 25 C 0.165 3.835 26 O -0.296 6.296 27 C 0.027 3.973 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.261 0.739 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 3.309 -15.938 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.308 3.692 5 O -0.369 6.369 6 C -0.057 4.057 7 N -0.244 5.244 8 C 0.053 3.947 9 C -0.590 4.590 10 H 0.074 0.926 11 C -0.131 4.131 12 N -0.521 5.521 13 Si 0.710 3.290 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.209 1.209 17 C -0.022 4.022 18 C -0.108 4.108 19 C 0.112 3.888 20 F -0.073 7.073 21 C -0.002 4.002 22 F -0.113 7.113 23 C -0.111 4.111 24 C -0.224 4.224 25 C 0.118 3.882 26 O -0.208 6.208 27 C -0.069 4.069 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.084 2.585 -16.065 16.404 hybrid contribution 0.060 0.742 1.885 2.027 sum -2.024 3.327 -14.180 14.705 Atomic orbital electron populations 1.21778 0.93250 1.02433 1.03228 1.22865 0.94738 0.81216 1.02340 1.86471 1.25646 1.31516 1.85104 1.23715 0.79712 0.93237 0.72528 1.90631 1.59802 1.42983 1.43435 1.21395 0.91110 0.89847 1.03332 1.62279 1.02135 1.20237 1.39798 1.20024 0.96648 0.95901 0.82132 1.21645 1.31947 1.12278 0.93148 0.92631 1.24862 0.94684 0.94887 0.98636 1.69961 1.34196 1.26334 1.21583 0.86695 0.78443 0.80752 0.83075 1.19797 1.21105 1.20907 1.20644 0.89088 0.91953 1.00534 1.18977 0.96350 1.05581 0.89914 1.17279 0.91135 1.00312 0.80054 1.91705 1.94436 1.90410 1.30799 1.17537 0.83364 1.11102 0.88241 1.91491 1.57502 1.94353 1.67956 1.20660 1.00371 0.99801 0.90266 1.20974 0.91177 1.09646 1.00624 1.18406 0.86449 0.94456 0.88908 1.86169 1.31188 1.85831 1.17624 1.23067 1.02738 1.00508 0.80551 0.91586 0.91790 0.90735 0.91749 0.91422 0.89649 0.88712 0.93245 0.94764 0.92961 0.90729 0.91232 0.84100 0.84406 0.92575 0.88312 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.18 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.40 10.22 -39.26 -0.40 -6.80 16 4 C 0.47 9.42 7.67 36.01 0.28 9.69 16 5 O -0.48 -11.37 14.07 -18.75 -0.26 -11.63 16 6 C 0.07 1.38 5.34 -4.97 -0.03 1.35 16 7 N -0.52 -11.22 4.37 -238.96 -1.04 -12.27 16 8 C 0.18 4.70 4.49 -4.98 -0.02 4.68 16 9 C -0.55 -15.00 7.00 -34.44 -0.24 -15.24 16 10 H 0.06 1.46 6.01 -52.49 -0.32 1.15 16 11 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 12 N -0.88 -26.73 13.29 55.43 0.74 -25.99 16 13 Si 0.88 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 C 0.11 2.02 4.56 -4.98 -0.02 2.00 16 18 C -0.11 -1.96 5.00 -104.42 -0.52 -2.48 16 19 C 0.13 2.66 6.36 -39.38 -0.25 2.41 16 20 F -0.10 -2.24 15.35 2.25 0.03 -2.21 16 21 C 0.02 0.31 7.30 -39.37 -0.29 0.03 16 22 F -0.13 -2.48 17.18 2.25 0.04 -2.44 16 23 C -0.09 -1.26 10.02 -39.54 -0.40 -1.65 16 24 C -0.21 -2.63 9.04 -39.43 -0.36 -2.99 16 25 C 0.16 2.55 6.66 -39.24 -0.26 2.28 16 26 O -0.30 -4.15 9.66 -19.56 -0.19 -4.34 16 27 C 0.03 0.24 9.81 101.05 0.99 1.23 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 33 H 0.09 1.69 6.29 -51.92 -0.33 1.36 16 34 H 0.09 1.46 7.83 -51.93 -0.41 1.06 16 35 H 0.05 1.47 5.86 -51.93 -0.30 1.17 16 36 H 0.03 1.00 6.33 -51.93 -0.33 0.67 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 1.22 7.34 -51.92 -0.38 0.84 16 39 H 0.07 1.47 5.72 -51.93 -0.30 1.17 16 40 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.14 1.28 6.29 -52.49 -0.33 0.94 16 42 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -34.12 372.39 -6.68 -40.80 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.58 Total: -0.76 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.60 Total: 3.22 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.31 Total: -38.26 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.85 Total: -22.77 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.07 Total: -4.65 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.12 -6.68 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143418379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.709 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds