Wall clock time and date at job start Wed Apr 1 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45192 * 109.47584 * 2 1 4 4 C 1.34234 * 117.00242 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99944 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99703 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.46708 * 179.97438 * 6 4 3 8 8 C 1.46903 * 110.99997 * 66.04554 * 7 6 4 9 9 C 1.50698 * 109.46762 * 57.78922 * 8 7 6 10 10 H 1.07999 * 120.00442 * 5.15599 * 9 8 7 11 11 C 1.37882 * 119.99781 * 185.15078 * 9 8 7 12 12 N 1.31523 * 119.99516 * 354.84555 * 11 9 8 13 13 Si 1.86794 * 120.00189 * 174.84545 * 11 9 8 14 14 H 1.48500 * 109.47137 * 95.00098 * 13 11 9 15 15 H 1.48498 * 109.46948 * 215.00225 * 13 11 9 16 16 H 1.48496 * 109.47130 * 334.99964 * 13 11 9 17 17 C 1.46898 * 110.99693 * 189.99848 * 7 6 4 18 18 C 1.50702 * 109.47009 * 162.54942 * 17 7 6 19 19 C 1.38237 * 120.00214 * 265.49306 * 18 17 7 20 20 C 1.38410 * 120.06689 * 179.97438 * 19 18 17 21 21 F 1.35109 * 119.95918 * 179.97438 * 20 19 18 22 22 C 1.38484 * 120.07763 * 359.97438 * 20 19 18 23 23 C 1.38283 * 120.00624 * 0.02562 * 22 20 19 24 24 F 1.35101 * 120.03511 * 179.97438 * 23 22 20 25 25 C 1.38596 * 120.00666 * 85.21802 * 18 17 7 26 26 O 1.36001 * 120.03420 * 0.02562 * 25 18 17 27 27 C 1.42895 * 116.99941 * 90.00130 * 26 25 18 28 28 H 1.09003 * 109.47345 * 59.99465 * 1 2 3 29 29 H 1.08999 * 109.47705 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47233 * 300.00069 * 1 2 3 31 31 H 1.09003 * 109.46721 * 240.00024 * 2 1 3 32 32 H 1.09003 * 109.47345 * 120.00535 * 2 1 3 33 33 H 1.09001 * 109.47245 * 59.99732 * 6 4 3 34 34 H 1.09000 * 109.47369 * 299.99749 * 6 4 3 35 35 H 1.08999 * 109.46635 * 177.78939 * 8 7 6 36 36 H 1.09000 * 109.46857 * 297.78786 * 8 7 6 37 37 H 0.97001 * 119.99409 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.47675 * 282.54480 * 17 7 6 39 39 H 1.08999 * 109.47216 * 42.55207 * 17 7 6 40 40 H 1.07994 * 119.96593 * 359.97438 * 19 18 17 41 41 H 1.08001 * 119.99624 * 179.97438 * 22 20 19 42 42 H 1.08998 * 109.46949 * 299.99811 * 27 26 25 43 43 H 1.08997 * 109.47274 * 60.00115 * 27 26 25 44 44 H 1.09008 * 109.46815 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3688 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3878 2.8603 -0.0001 8 6 5.8843 2.2772 -1.2537 9 6 5.3997 3.1022 -2.4180 10 1 4.8552 4.0181 -2.2414 11 6 5.6515 2.6879 -3.7087 12 7 6.4004 1.6286 -3.9249 13 14 4.9290 3.6310 -5.1502 14 1 5.9253 4.6131 -5.6484 15 1 4.5822 2.6822 -6.2386 16 1 3.7052 4.3475 -4.7095 17 6 5.9842 4.1814 0.2385 18 6 7.4230 4.0151 0.6551 19 6 7.7543 3.9780 1.9966 20 6 9.0752 3.8249 2.3807 21 9 9.3966 3.7894 3.6925 22 6 10.0677 3.7080 1.4220 23 6 9.7397 3.7447 0.0791 24 9 10.7075 3.6312 -0.8567 25 6 8.4134 3.8937 -0.3068 26 8 8.0878 3.9250 -1.6269 27 6 8.0811 5.2044 -2.2632 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4689 0.8905 34 1 3.5845 3.4700 -0.8895 35 1 6.9742 2.2680 -1.2435 36 1 5.5132 1.2570 -1.3519 37 1 6.5779 1.3373 -4.8330 38 1 5.9369 4.7721 -0.6763 39 1 5.4337 4.6911 1.0292 40 1 6.9817 4.0686 2.7458 41 1 11.0980 3.5889 1.7231 42 1 7.3584 5.8528 -1.7679 43 1 9.0740 5.6490 -2.1959 44 1 7.8053 5.0875 -3.3113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143567225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:52 Heat of formation + Delta-G solvation = -165.996445 kcal Electronic energy + Delta-G solvation = -31531.086917 eV Core-core repulsion = 26893.142668 eV Total energy + Delta-G solvation = -4637.944250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.84205 -48.66883 -39.98738 -39.55772 -36.85536 -36.68704 -35.50175 -32.49163 -31.67390 -31.21603 -29.49215 -27.90140 -27.20322 -26.11207 -24.48934 -23.10223 -22.48563 -22.02398 -20.81946 -19.72036 -17.72331 -17.42347 -17.28863 -16.98848 -16.52115 -16.17873 -15.97566 -15.64904 -15.43299 -15.20344 -14.80285 -14.73268 -14.42401 -14.22229 -14.09051 -14.04969 -13.48576 -13.42598 -13.00863 -12.80436 -12.49635 -12.32807 -12.24089 -11.93993 -11.57897 -11.44174 -11.32036 -11.30847 -11.05671 -10.93736 -10.80791 -10.79033 -10.35162 -10.09999 -10.03725 -9.72235 -9.40608 -9.32690 -8.73580 -8.28078 -8.22091 -7.31382 -5.93141 -3.98699 1.09852 1.15998 2.95464 3.08551 3.23893 3.34294 3.34768 3.43524 3.97965 4.23249 4.42595 4.57563 4.72271 4.98473 5.06682 5.08824 5.14320 5.29612 5.33391 5.38196 5.46466 5.60474 5.68519 5.72187 5.75468 5.77616 5.87471 5.90533 5.94683 6.02220 6.05497 6.12444 6.17567 6.24105 6.33582 6.60801 6.81162 6.95434 7.19699 7.64276 7.91035 7.99285 8.09783 8.23316 8.33782 8.53929 9.07769 9.63240 11.13326 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.004780 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.916098 B = 5856.799232 C = 8195.718827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.370 6.370 4 C 0.467 3.533 5 O -0.482 6.482 6 C 0.071 3.929 7 N -0.524 5.524 8 C 0.174 3.826 9 C -0.539 4.539 10 H 0.050 0.950 11 C 0.075 3.925 12 N -0.876 5.876 13 Si 0.872 3.128 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.098 3.902 18 C -0.029 4.029 19 C -0.135 4.135 20 C 0.110 3.890 21 F -0.137 7.137 22 C -0.187 4.187 23 C 0.101 3.899 24 F -0.127 7.127 25 C 0.080 3.920 26 O -0.274 6.274 27 C 0.046 3.954 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.259 0.741 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 5.957 10.140 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.288 6.288 4 C 0.308 3.692 5 O -0.367 6.367 6 C -0.058 4.058 7 N -0.249 5.249 8 C 0.049 3.951 9 C -0.578 4.578 10 H 0.068 0.932 11 C -0.128 4.128 12 N -0.514 5.514 13 Si 0.700 3.300 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.029 4.029 18 C -0.030 4.030 19 C -0.155 4.155 20 C 0.090 3.910 21 F -0.116 7.116 22 C -0.207 4.207 23 C 0.081 3.919 24 F -0.106 7.106 25 C 0.033 3.967 26 O -0.190 6.190 27 C -0.048 4.048 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.859 5.024 10.256 11.571 hybrid contribution -0.189 0.870 -1.575 1.809 sum -2.048 5.894 8.682 10.691 Atomic orbital electron populations 1.21778 0.93260 1.02451 1.03205 1.22863 0.94721 0.81171 1.02378 1.86460 1.25633 1.31565 1.85122 1.23648 0.79748 0.93181 0.72635 1.90640 1.59780 1.42958 1.43297 1.21391 0.91025 0.90044 1.03302 1.62379 1.02241 1.19527 1.40762 1.20209 0.97606 0.95796 0.81459 1.21461 1.36264 1.08185 0.91907 0.93173 1.24792 0.94869 0.94944 0.98235 1.69969 1.36418 1.24506 1.20501 0.86928 0.79557 0.79991 0.83519 1.20886 1.21311 1.20081 1.20839 0.89010 0.92408 1.00670 1.19890 0.96266 0.95685 0.91174 1.20935 0.94515 1.03560 0.96483 1.17154 0.92998 1.03260 0.77541 1.91494 1.93532 1.94026 1.32545 1.20813 1.00777 1.08276 0.90841 1.17753 0.85196 1.03393 0.85591 1.91508 1.61580 1.93258 1.64206 1.18744 0.89319 1.01585 0.87019 1.86641 1.87999 1.27912 1.16404 1.22880 0.98701 0.84286 0.98949 0.91593 0.90720 0.91808 0.91390 0.91732 0.89034 0.89335 0.92808 0.93171 0.93127 0.91328 0.91218 0.83989 0.83743 0.93996 0.95078 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.15 0.38 -1.18 16 2 C 0.06 0.90 6.18 37.15 0.23 1.13 16 3 O -0.37 -6.30 10.22 -39.27 -0.40 -6.70 16 4 C 0.47 9.18 7.70 36.01 0.28 9.45 16 5 O -0.48 -11.17 14.06 -18.74 -0.26 -11.44 16 6 C 0.07 1.28 5.32 -4.97 -0.03 1.25 16 7 N -0.52 -10.55 4.38 -238.96 -1.05 -11.60 16 8 C 0.17 4.32 4.23 -4.98 -0.02 4.30 16 9 C -0.54 -13.53 6.30 -34.44 -0.22 -13.75 16 10 H 0.05 1.21 5.99 -52.49 -0.31 0.90 16 11 C 0.07 2.00 5.45 -17.81 -0.10 1.90 16 12 N -0.88 -25.31 13.29 55.43 0.74 -24.57 16 13 Si 0.87 20.36 29.54 -169.99 -5.02 15.34 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C 0.10 1.65 4.84 -4.98 -0.02 1.63 16 18 C -0.03 -0.48 5.20 -104.49 -0.54 -1.02 16 19 C -0.14 -1.95 9.66 -39.52 -0.38 -2.33 16 20 C 0.11 1.56 7.30 -39.43 -0.29 1.27 16 21 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 22 C -0.19 -2.70 10.00 -39.47 -0.39 -3.09 16 23 C 0.10 1.71 7.31 -39.31 -0.29 1.42 16 24 F -0.13 -2.25 17.11 2.25 0.04 -2.21 16 25 C 0.08 1.46 4.74 -39.19 -0.19 1.28 16 26 O -0.27 -5.69 6.22 -19.75 -0.12 -5.81 16 27 C 0.05 0.79 10.79 101.05 1.09 1.88 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 32 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 33 H 0.09 1.28 7.85 -51.93 -0.41 0.88 16 34 H 0.09 1.66 6.25 -51.93 -0.32 1.33 16 35 H 0.05 1.46 4.80 -51.93 -0.25 1.21 16 36 H 0.05 1.46 5.93 -51.93 -0.31 1.15 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.07 1.24 4.79 -51.93 -0.25 0.99 16 39 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 40 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.04 0.64 7.18 -51.93 -0.37 0.26 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -31.21 370.60 -6.51 -37.71 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.56 Total: 1.39 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.49 Total: 4.14 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.31 Total: -36.17 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.79 Total: -23.95 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.21 -6.51 -37.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143567225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.283 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds