Wall clock time and date at job start Wed Apr 1 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45192 * 109.47584 * 2 1 4 4 C 1.34234 * 117.00242 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99944 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99703 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.46708 * 179.97438 * 6 4 3 8 8 C 1.46903 * 110.99997 * 66.04554 * 7 6 4 9 9 C 1.50698 * 109.46762 * 57.78922 * 8 7 6 10 10 H 1.07999 * 120.00442 * 5.15599 * 9 8 7 11 11 C 1.37882 * 119.99781 * 185.15078 * 9 8 7 12 12 N 1.31523 * 119.99516 * 354.84555 * 11 9 8 13 13 Si 1.86794 * 120.00189 * 174.84545 * 11 9 8 14 14 H 1.48500 * 109.47137 * 95.00098 * 13 11 9 15 15 H 1.48498 * 109.46948 * 215.00225 * 13 11 9 16 16 H 1.48496 * 109.47130 * 334.99964 * 13 11 9 17 17 C 1.46898 * 110.99693 * 189.99848 * 7 6 4 18 18 C 1.50702 * 109.47009 * 162.54942 * 17 7 6 19 19 C 1.38237 * 120.00214 * 265.49306 * 18 17 7 20 20 C 1.38410 * 120.06689 * 179.97438 * 19 18 17 21 21 F 1.35109 * 119.95918 * 179.97438 * 20 19 18 22 22 C 1.38484 * 120.07763 * 359.97438 * 20 19 18 23 23 C 1.38283 * 120.00624 * 0.02562 * 22 20 19 24 24 F 1.35101 * 120.03511 * 179.97438 * 23 22 20 25 25 C 1.38596 * 120.00666 * 85.21802 * 18 17 7 26 26 O 1.36001 * 120.03420 * 0.02562 * 25 18 17 27 27 C 1.42895 * 116.99941 * 90.00130 * 26 25 18 28 28 H 1.09003 * 109.47345 * 59.99465 * 1 2 3 29 29 H 1.08999 * 109.47705 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47233 * 300.00069 * 1 2 3 31 31 H 1.09003 * 109.46721 * 240.00024 * 2 1 3 32 32 H 1.09003 * 109.47345 * 120.00535 * 2 1 3 33 33 H 1.09001 * 109.47245 * 59.99732 * 6 4 3 34 34 H 1.09000 * 109.47369 * 299.99749 * 6 4 3 35 35 H 1.08999 * 109.46635 * 177.78939 * 8 7 6 36 36 H 1.09000 * 109.46857 * 297.78786 * 8 7 6 37 37 H 0.97001 * 119.99409 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.47675 * 282.54480 * 17 7 6 39 39 H 1.08999 * 109.47216 * 42.55207 * 17 7 6 40 40 H 1.07994 * 119.96593 * 359.97438 * 19 18 17 41 41 H 1.08001 * 119.99624 * 179.97438 * 22 20 19 42 42 H 1.08998 * 109.46949 * 299.99811 * 27 26 25 43 43 H 1.08997 * 109.47274 * 60.00115 * 27 26 25 44 44 H 1.09008 * 109.46815 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3688 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3878 2.8603 -0.0001 8 6 5.8843 2.2772 -1.2537 9 6 5.3997 3.1022 -2.4180 10 1 4.8552 4.0181 -2.2414 11 6 5.6515 2.6879 -3.7087 12 7 6.4004 1.6286 -3.9249 13 14 4.9290 3.6310 -5.1502 14 1 5.9253 4.6131 -5.6484 15 1 4.5822 2.6822 -6.2386 16 1 3.7052 4.3475 -4.7095 17 6 5.9842 4.1814 0.2385 18 6 7.4230 4.0151 0.6551 19 6 7.7543 3.9780 1.9966 20 6 9.0752 3.8249 2.3807 21 9 9.3966 3.7894 3.6925 22 6 10.0677 3.7080 1.4220 23 6 9.7397 3.7447 0.0791 24 9 10.7075 3.6312 -0.8567 25 6 8.4134 3.8937 -0.3068 26 8 8.0878 3.9250 -1.6269 27 6 8.0811 5.2044 -2.2632 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4689 0.8905 34 1 3.5845 3.4700 -0.8895 35 1 6.9742 2.2680 -1.2435 36 1 5.5132 1.2570 -1.3519 37 1 6.5779 1.3373 -4.8330 38 1 5.9369 4.7721 -0.6763 39 1 5.4337 4.6911 1.0292 40 1 6.9817 4.0686 2.7458 41 1 11.0980 3.5889 1.7231 42 1 7.3584 5.8528 -1.7679 43 1 9.0740 5.6490 -2.1959 44 1 7.8053 5.0875 -3.3113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143567225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:51 Heat of formation + Delta-G solvation = -184.968702 kcal Electronic energy + Delta-G solvation = -31531.909616 eV Core-core repulsion = 26893.142668 eV Total energy + Delta-G solvation = -4638.766949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.99615 -49.94869 -41.44887 -40.90542 -38.34152 -38.01386 -37.04705 -34.44706 -32.86379 -32.42800 -30.73927 -29.54375 -28.70247 -27.55613 -26.06459 -24.50148 -23.70420 -23.34361 -22.20067 -21.28830 -19.16666 -18.74470 -18.56924 -18.38411 -18.23230 -17.61413 -17.27921 -17.00057 -16.83775 -16.48861 -16.41413 -16.18350 -15.77195 -15.56074 -15.50360 -15.39748 -14.88127 -14.84147 -14.41296 -14.06925 -13.91223 -13.53315 -13.52993 -13.23337 -12.92871 -12.83772 -12.76507 -12.61725 -12.58041 -12.43912 -12.35872 -12.29350 -12.01261 -11.88233 -11.57989 -11.42345 -11.07361 -10.74860 -10.34383 -9.95571 -9.47750 -8.96696 -7.96117 -6.08214 -0.12711 -0.04928 1.37930 1.42102 1.43886 1.49154 1.76757 2.20686 2.46437 2.74935 2.95898 3.32917 3.35215 3.47203 3.65940 3.89145 3.97434 4.03706 4.10999 4.17429 4.35675 4.39036 4.39152 4.46809 4.50002 4.52071 4.69348 4.75241 4.79424 4.83625 4.89895 4.95115 4.96398 5.04312 5.18159 5.32255 5.48072 5.55298 5.63331 5.66179 6.05837 6.11237 6.33597 6.50532 6.66338 7.03505 7.08563 7.58201 9.09148 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.004780 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.916098 B = 5856.799232 C = 8195.718827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.463 3.537 5 O -0.527 6.527 6 C 0.071 3.929 7 N -0.532 5.532 8 C 0.196 3.804 9 C -0.518 4.518 10 H 0.063 0.937 11 C 0.022 3.978 12 N -0.923 5.923 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.298 1.298 16 H -0.261 1.261 17 C 0.100 3.900 18 C -0.043 4.043 19 C -0.121 4.121 20 C 0.114 3.886 21 F -0.130 7.130 22 C -0.174 4.174 23 C 0.079 3.921 24 F -0.139 7.139 25 C 0.058 3.942 26 O -0.311 6.311 27 C 0.046 3.954 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.028 0.972 36 H 0.000 1.000 37 H 0.253 0.747 38 H 0.055 0.945 39 H 0.116 0.884 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 7.989 12.342 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.306 3.694 5 O -0.415 6.415 6 C -0.058 4.058 7 N -0.256 5.256 8 C 0.070 3.930 9 C -0.558 4.558 10 H 0.081 0.919 11 C -0.177 4.177 12 N -0.563 5.563 13 Si 0.758 3.242 14 H -0.200 1.200 15 H -0.225 1.225 16 H -0.185 1.185 17 C -0.027 4.027 18 C -0.044 4.044 19 C -0.140 4.140 20 C 0.095 3.905 21 F -0.108 7.108 22 C -0.194 4.194 23 C 0.059 3.941 24 F -0.117 7.117 25 C 0.012 3.988 26 O -0.227 6.227 27 C -0.048 4.048 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.019 0.981 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.190 0.810 41 H 0.186 0.814 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.487 7.102 12.483 14.779 hybrid contribution 0.299 0.212 -2.128 2.160 sum -3.188 7.314 10.354 13.072 Atomic orbital electron populations 1.21789 0.89774 1.04294 1.03828 1.23184 0.97394 0.79817 1.01667 1.86460 1.24189 1.33161 1.84430 1.24141 0.80277 0.93518 0.71418 1.90633 1.60936 1.44448 1.45496 1.21578 0.89499 0.89315 1.05361 1.62176 1.03776 1.21803 1.37866 1.19649 0.95888 0.93665 0.83815 1.21675 1.34431 1.07845 0.91805 0.91889 1.25529 0.95397 0.95737 1.01051 1.70142 1.38828 1.26864 1.20509 0.85970 0.79413 0.78676 0.80175 1.19995 1.22488 1.18489 1.20948 0.89556 0.90505 1.01695 1.19928 0.95844 0.96870 0.91801 1.21179 0.95332 1.01480 0.95985 1.17136 0.92939 1.02716 0.77729 1.91523 1.93473 1.93894 1.31916 1.21017 1.02226 1.06438 0.89698 1.17927 0.84746 1.04975 0.86411 1.91470 1.61865 1.93564 1.64845 1.19062 0.90445 1.02806 0.86459 1.86557 1.88492 1.29631 1.18050 1.22908 1.00234 0.83742 0.97936 0.91650 0.88282 0.90421 0.93355 0.91378 0.83953 0.89886 0.95364 0.98148 0.93764 0.92650 0.86612 0.81020 0.81367 0.92213 0.93411 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 10.29 71.98 0.74 -1.87 16 2 C 0.05 1.49 6.18 71.98 0.45 1.94 16 3 O -0.37 -12.09 10.22 -51.45 -0.53 -12.61 16 4 C 0.46 18.07 7.70 71.24 0.55 18.62 16 5 O -0.53 -25.17 14.06 21.98 0.31 -24.87 16 6 C 0.07 2.40 5.32 85.56 0.45 2.85 16 7 N -0.53 -20.89 4.38 -909.93 -3.99 -24.88 16 8 C 0.20 10.01 4.23 85.56 0.36 10.37 16 9 C -0.52 -26.31 6.30 25.60 0.16 -26.15 16 10 H 0.06 2.98 5.99 -2.91 -0.02 2.96 16 11 C 0.02 1.18 5.45 84.65 0.46 1.64 16 12 N -0.92 -55.77 13.29 21.45 0.29 -55.48 16 13 Si 0.93 42.38 29.54 68.60 2.03 44.40 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 17 C 0.10 3.12 4.84 85.56 0.41 3.53 16 18 C -0.04 -1.36 5.20 -19.78 -0.10 -1.47 16 19 C -0.12 -3.09 9.66 22.31 0.22 -2.88 16 20 C 0.11 2.93 7.30 22.37 0.16 3.09 16 21 F -0.13 -3.10 17.27 44.97 0.78 -2.32 16 22 C -0.17 -4.72 10.00 22.34 0.22 -4.49 16 23 C 0.08 2.67 7.31 22.45 0.16 2.84 16 24 F -0.14 -5.03 17.11 44.97 0.77 -4.26 16 25 C 0.06 2.13 4.74 22.52 0.11 2.24 16 26 O -0.31 -13.25 6.22 -93.57 -0.58 -13.84 16 27 C 0.05 1.58 10.79 113.37 1.22 2.81 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 33 H 0.14 3.35 7.85 -2.39 -0.02 3.33 16 34 H 0.08 2.94 6.25 -2.39 -0.01 2.93 16 35 H 0.03 1.61 4.80 -2.39 -0.01 1.60 16 36 H 0.00 0.03 5.93 -2.39 -0.01 0.01 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.06 1.89 4.79 -2.39 -0.01 1.88 16 39 H 0.12 2.53 7.69 -2.39 -0.02 2.51 16 40 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.06 1.79 7.18 -2.39 -0.02 1.77 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -72.09 370.60 5.70 -66.40 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.04 Total: 14.38 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.58 Total: 13.08 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -3.70 Total: -80.36 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.80 Total: -51.32 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.55 Total: -6.58 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -72.09 5.70 -66.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143567225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.572 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds