Wall clock time and date at job start Wed Apr 1 2020 02:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45193 * 109.47261 * 2 1 4 4 C 1.34230 * 117.00033 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00027 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00246 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.47208 * 174.27934 * 6 4 3 8 8 C 1.46902 * 110.99863 * 160.56554 * 7 6 4 9 9 C 1.50700 * 109.46866 * 287.49782 * 8 7 6 10 10 H 1.07994 * 120.00200 * 359.01108 * 9 8 7 11 11 C 1.37886 * 119.99842 * 179.01111 * 9 8 7 12 12 N 1.31517 * 119.99865 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99913 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47079 * 89.99715 * 13 11 9 15 15 H 1.48494 * 109.46843 * 209.99769 * 13 11 9 16 16 H 1.48499 * 109.46951 * 329.99886 * 13 11 9 17 17 C 1.46904 * 111.00209 * 284.51698 * 7 6 4 18 18 C 1.50696 * 109.47196 * 170.00031 * 17 7 6 19 19 C 1.38251 * 119.95118 * 104.99927 * 18 17 7 20 20 C 1.38176 * 120.11352 * 180.02562 * 19 18 17 21 21 C 1.38702 * 120.01532 * 359.97438 * 20 19 18 22 22 O 1.35952 * 120.05328 * 180.02562 * 21 20 19 23 23 C 1.42905 * 116.99749 * 0.02562 * 22 21 20 24 24 C 1.38842 * 119.89799 * 0.27018 * 21 20 19 25 25 F 1.35103 * 120.05467 * 179.70091 * 24 21 20 26 26 C 1.38456 * 119.95215 * 285.02573 * 18 17 7 27 27 F 1.35102 * 120.00372 * 359.95760 * 26 18 17 28 28 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46892 * 299.99909 * 1 2 3 30 30 H 1.09007 * 109.47240 * 59.99450 * 1 2 3 31 31 H 1.09004 * 109.46714 * 240.00372 * 2 1 3 32 32 H 1.08999 * 109.47365 * 120.00825 * 2 1 3 33 33 H 1.09003 * 109.46769 * 54.28396 * 6 4 3 34 34 H 1.08993 * 109.47512 * 294.28401 * 6 4 3 35 35 H 1.08993 * 109.47313 * 47.50180 * 8 7 6 36 36 H 1.08999 * 109.46924 * 167.50105 * 8 7 6 37 37 H 0.96993 * 119.99434 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.46866 * 49.99994 * 17 7 6 39 39 H 1.08996 * 109.47144 * 290.00178 * 17 7 6 40 40 H 1.07996 * 119.94341 * 0.02562 * 19 18 17 41 41 H 1.07998 * 119.99286 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.46857 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47191 * 59.99756 * 23 22 21 44 44 H 1.08999 * 109.46842 * 299.99951 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3815 2.8629 0.1373 8 6 6.0164 4.1098 -0.3098 9 6 5.9422 4.2006 -1.8122 10 1 5.4848 3.4036 -2.3794 11 6 6.4583 5.3014 -2.4627 12 7 7.0149 6.2723 -1.7719 13 14 6.3656 5.4143 -4.3250 14 1 5.1004 6.0853 -4.7179 15 1 7.5201 6.1992 -4.8313 16 1 6.4027 4.0483 -4.9061 17 6 5.7648 2.5429 1.5189 18 6 7.2388 2.2339 1.5725 19 6 8.1196 3.1608 2.0982 20 6 9.4719 2.8812 2.1485 21 6 9.9479 1.6688 1.6717 22 8 11.2782 1.3927 1.7213 23 6 12.1289 2.3969 2.2780 24 6 9.0644 0.7396 1.1390 25 9 9.5253 -0.4398 0.6681 26 6 7.7089 1.0224 1.0947 27 9 6.8464 0.1179 0.5817 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5057 3.5018 0.8350 34 1 3.6688 3.4352 -0.9362 35 1 5.4974 4.9605 0.1317 36 1 7.0604 4.1186 0.0036 37 1 7.3776 7.0468 -2.2295 38 1 5.1992 1.6764 1.8615 39 1 5.5487 3.3955 2.1626 40 1 7.7502 4.1050 2.4701 41 1 10.1583 3.6068 2.5592 42 1 13.1620 2.0502 2.2573 43 1 11.8320 2.5943 3.3081 44 1 12.0413 3.3124 1.6930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143915874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:28 Heat of formation + Delta-G solvation = -175.157286 kcal Electronic energy + Delta-G solvation = -30910.627392 eV Core-core repulsion = 26272.285898 eV Total energy + Delta-G solvation = -4638.341494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.92034 -47.97503 -40.07606 -39.85870 -37.90159 -36.55337 -35.54948 -32.65335 -31.73133 -30.88808 -30.18720 -28.13415 -27.81721 -26.51514 -24.26930 -23.08508 -22.59282 -21.89711 -20.99493 -19.87715 -18.36746 -17.40637 -17.20231 -16.90001 -16.49702 -16.32241 -16.21805 -15.90362 -15.75118 -15.26873 -14.95146 -14.54181 -14.49499 -14.39139 -14.13863 -13.91135 -13.73481 -13.38224 -13.12027 -12.83856 -12.58700 -12.41735 -12.16870 -12.09349 -11.93817 -11.76049 -11.45147 -11.39504 -11.27656 -11.17355 -10.98262 -10.86264 -10.72803 -10.62026 -10.28761 -10.01028 -9.76156 -9.31357 -8.50075 -8.42945 -8.04015 -7.45638 -6.08856 -4.09759 1.21267 1.29554 2.76197 2.96572 3.03684 3.29601 3.36510 3.42679 3.57660 4.20445 4.39570 4.73909 4.77001 4.81868 4.93549 4.95949 4.99678 5.06642 5.11057 5.17519 5.27404 5.27992 5.31955 5.37605 5.43273 5.64259 5.71194 5.75697 5.77994 5.93279 5.95109 5.99059 6.08465 6.20010 6.25272 6.51818 6.78704 6.80930 7.03154 7.14680 7.29459 7.71248 7.86226 8.02764 8.32406 8.41164 8.97631 9.54983 11.01422 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007393 B = 0.004663 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.484104 B = 6003.196728 C = 8672.594278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.452 3.548 5 O -0.481 6.481 6 C 0.074 3.926 7 N -0.517 5.517 8 C 0.193 3.807 9 C -0.510 4.510 10 H 0.064 0.936 11 C 0.059 3.941 12 N -0.897 5.897 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.099 3.901 18 C -0.109 4.109 19 C -0.045 4.045 20 C -0.195 4.195 21 C 0.117 3.883 22 O -0.309 6.309 23 C 0.027 3.973 24 C 0.022 3.978 25 F -0.128 7.128 26 C 0.140 3.860 27 F -0.102 7.102 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.128 0.872 35 H -0.002 1.002 36 H 0.042 0.958 37 H 0.261 0.739 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -6.438 11.161 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.293 3.707 5 O -0.365 6.365 6 C -0.055 4.055 7 N -0.243 5.243 8 C 0.069 3.931 9 C -0.548 4.548 10 H 0.082 0.918 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.029 4.029 18 C -0.110 4.110 19 C -0.064 4.064 20 C -0.214 4.214 21 C 0.071 3.929 22 O -0.223 6.223 23 C -0.068 4.068 24 C 0.001 3.999 25 F -0.107 7.107 26 C 0.118 3.882 27 F -0.080 7.080 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.016 0.984 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.784 -7.222 10.726 12.955 hybrid contribution -0.162 0.547 -0.741 0.935 sum -0.946 -6.675 9.986 12.048 Atomic orbital electron populations 1.21785 0.93147 1.02507 1.03347 1.22879 0.94871 0.81142 1.02297 1.86510 1.25665 1.31566 1.84914 1.24217 0.79849 0.93693 0.72898 1.90683 1.59861 1.42637 1.43331 1.21503 0.89955 0.88905 1.05161 1.61726 1.04475 1.39672 1.18385 1.19871 0.94725 0.82335 0.96189 1.21144 1.38387 1.04069 0.91225 0.91827 1.24933 0.95215 0.95574 0.98499 1.69936 1.39411 1.08744 1.35535 0.86536 0.77541 0.78220 0.85436 1.20640 1.21239 1.19734 1.20901 0.90521 1.00121 0.91360 1.19598 0.97406 0.92381 1.01647 1.20803 0.91662 0.98151 0.95797 1.21048 0.97041 0.96262 1.07065 1.18597 0.83377 0.93368 0.97568 1.86100 1.14062 1.43618 1.78487 1.23122 0.93803 0.91767 0.98135 1.16769 0.90140 0.84544 1.08443 1.91480 1.88950 1.43516 1.86704 1.17113 0.84750 0.88810 0.97479 1.91635 1.67929 1.64800 1.83617 0.90679 0.91700 0.91552 0.91496 0.91700 0.91785 0.85429 0.98403 0.93958 0.92900 0.90550 0.93931 0.84167 0.84144 0.88116 0.92423 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.72 10.22 -39.26 -0.40 -6.13 16 4 C 0.45 8.14 7.50 36.01 0.27 8.41 16 5 O -0.48 -9.90 14.66 -18.75 -0.27 -10.18 16 6 C 0.07 1.35 5.42 -4.98 -0.03 1.33 16 7 N -0.52 -10.79 3.97 -238.97 -0.95 -11.74 16 8 C 0.19 4.64 4.59 -4.98 -0.02 4.62 16 9 C -0.51 -13.79 8.35 -34.44 -0.29 -14.07 16 10 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -25.34 13.29 55.43 0.74 -24.60 16 13 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 C 0.10 1.75 4.42 -4.98 -0.02 1.73 16 18 C -0.11 -1.94 4.49 -104.54 -0.47 -2.41 16 19 C -0.05 -0.70 8.65 -39.60 -0.34 -1.04 16 20 C -0.20 -2.77 9.04 -39.43 -0.36 -3.13 16 21 C 0.12 1.89 6.69 -39.19 -0.26 1.63 16 22 O -0.31 -4.53 10.36 -19.59 -0.20 -4.73 16 23 C 0.03 0.25 9.81 101.05 0.99 1.24 16 24 C 0.02 0.40 7.32 -39.25 -0.29 0.12 16 25 F -0.13 -2.46 17.03 2.25 0.04 -2.42 16 26 C 0.14 2.70 7.25 -39.39 -0.29 2.41 16 27 F -0.10 -2.17 16.08 2.25 0.04 -2.13 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16 34 H 0.13 2.46 7.10 -51.93 -0.37 2.09 16 35 H 0.00 -0.05 8.04 -51.93 -0.42 -0.46 16 36 H 0.04 1.08 6.11 -51.93 -0.32 0.76 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.08 1.34 6.80 -51.93 -0.35 0.99 16 39 H 0.04 0.67 7.93 -51.93 -0.41 0.26 16 40 H 0.14 1.88 8.00 -52.49 -0.42 1.46 16 41 H 0.14 1.53 6.30 -52.49 -0.33 1.20 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 44 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -32.67 380.43 -6.80 -39.47 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.91 Total: -2.01 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.59 Total: 2.38 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.21 Total: -36.34 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.88 Total: -21.03 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.67 -6.80 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143915874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.689 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds