Wall clock time and date at job start Wed Apr 1 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45193 * 109.47261 * 2 1 4 4 C 1.34230 * 117.00033 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00027 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00246 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.47208 * 174.27934 * 6 4 3 8 8 C 1.46902 * 110.99863 * 160.56554 * 7 6 4 9 9 C 1.50700 * 109.46866 * 287.49782 * 8 7 6 10 10 H 1.07994 * 120.00200 * 359.01108 * 9 8 7 11 11 C 1.37886 * 119.99842 * 179.01111 * 9 8 7 12 12 N 1.31517 * 119.99865 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99913 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47079 * 89.99715 * 13 11 9 15 15 H 1.48494 * 109.46843 * 209.99769 * 13 11 9 16 16 H 1.48499 * 109.46951 * 329.99886 * 13 11 9 17 17 C 1.46904 * 111.00209 * 284.51698 * 7 6 4 18 18 C 1.50696 * 109.47196 * 170.00031 * 17 7 6 19 19 C 1.38251 * 119.95118 * 104.99927 * 18 17 7 20 20 C 1.38176 * 120.11352 * 180.02562 * 19 18 17 21 21 C 1.38702 * 120.01532 * 359.97438 * 20 19 18 22 22 O 1.35952 * 120.05328 * 180.02562 * 21 20 19 23 23 C 1.42905 * 116.99749 * 0.02562 * 22 21 20 24 24 C 1.38842 * 119.89799 * 0.27018 * 21 20 19 25 25 F 1.35103 * 120.05467 * 179.70091 * 24 21 20 26 26 C 1.38456 * 119.95215 * 285.02573 * 18 17 7 27 27 F 1.35102 * 120.00372 * 359.95760 * 26 18 17 28 28 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46892 * 299.99909 * 1 2 3 30 30 H 1.09007 * 109.47240 * 59.99450 * 1 2 3 31 31 H 1.09004 * 109.46714 * 240.00372 * 2 1 3 32 32 H 1.08999 * 109.47365 * 120.00825 * 2 1 3 33 33 H 1.09003 * 109.46769 * 54.28396 * 6 4 3 34 34 H 1.08993 * 109.47512 * 294.28401 * 6 4 3 35 35 H 1.08993 * 109.47313 * 47.50180 * 8 7 6 36 36 H 1.08999 * 109.46924 * 167.50105 * 8 7 6 37 37 H 0.96993 * 119.99434 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.46866 * 49.99994 * 17 7 6 39 39 H 1.08996 * 109.47144 * 290.00178 * 17 7 6 40 40 H 1.07996 * 119.94341 * 0.02562 * 19 18 17 41 41 H 1.07998 * 119.99286 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.46857 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47191 * 59.99756 * 23 22 21 44 44 H 1.08999 * 109.46842 * 299.99951 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3815 2.8629 0.1373 8 6 6.0164 4.1098 -0.3098 9 6 5.9422 4.2006 -1.8122 10 1 5.4848 3.4036 -2.3794 11 6 6.4583 5.3014 -2.4627 12 7 7.0149 6.2723 -1.7719 13 14 6.3656 5.4143 -4.3250 14 1 5.1004 6.0853 -4.7179 15 1 7.5201 6.1992 -4.8313 16 1 6.4027 4.0483 -4.9061 17 6 5.7648 2.5429 1.5189 18 6 7.2388 2.2339 1.5725 19 6 8.1196 3.1608 2.0982 20 6 9.4719 2.8812 2.1485 21 6 9.9479 1.6688 1.6717 22 8 11.2782 1.3927 1.7213 23 6 12.1289 2.3969 2.2780 24 6 9.0644 0.7396 1.1390 25 9 9.5253 -0.4398 0.6681 26 6 7.7089 1.0224 1.0947 27 9 6.8464 0.1179 0.5817 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5057 3.5018 0.8350 34 1 3.6688 3.4352 -0.9362 35 1 5.4974 4.9605 0.1317 36 1 7.0604 4.1186 0.0036 37 1 7.3776 7.0468 -2.2295 38 1 5.1992 1.6764 1.8615 39 1 5.5487 3.3955 2.1626 40 1 7.7502 4.1050 2.4701 41 1 10.1583 3.6068 2.5592 42 1 13.1620 2.0502 2.2573 43 1 11.8320 2.5943 3.3081 44 1 12.0413 3.3124 1.6930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143915874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:27 Heat of formation + Delta-G solvation = -194.830375 kcal Electronic energy + Delta-G solvation = -30911.480481 eV Core-core repulsion = 26272.285898 eV Total energy + Delta-G solvation = -4639.194583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.38126 -49.45967 -41.44246 -41.05956 -39.21502 -37.88161 -37.03517 -34.66592 -32.75691 -32.16115 -31.45694 -29.84282 -28.95927 -27.80728 -25.85531 -24.29417 -23.88021 -23.32689 -22.34630 -21.37125 -19.56437 -18.83089 -18.56474 -18.47026 -18.16211 -17.61851 -17.60728 -17.25734 -17.06674 -16.64111 -16.42861 -15.97143 -15.94866 -15.65614 -15.62939 -15.29410 -14.96990 -14.87997 -14.51071 -14.03888 -13.95144 -13.60267 -13.46368 -13.32974 -13.25467 -13.06347 -12.97556 -12.73164 -12.57828 -12.47771 -12.44990 -12.37617 -12.24667 -12.06681 -11.77515 -11.45129 -11.38426 -11.18954 -10.55670 -9.78710 -9.30806 -9.04946 -8.16834 -6.23497 -0.09874 0.01426 1.32885 1.40356 1.42683 1.52721 1.68666 1.96569 2.30171 2.42958 2.94368 3.16394 3.32055 3.46128 3.55862 3.70548 3.89084 4.00128 4.03264 4.12547 4.14715 4.28867 4.32482 4.38070 4.39990 4.42298 4.56653 4.58578 4.74482 4.77196 4.87193 4.95002 4.96235 5.00238 5.16024 5.18258 5.25656 5.27890 5.52834 5.54466 5.68873 6.07616 6.17898 6.21190 6.53688 6.88999 6.95078 7.44572 8.92455 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007393 B = 0.004663 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.484104 B = 6003.196728 C = 8672.594278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.460 3.540 5 O -0.512 6.512 6 C 0.073 3.927 7 N -0.537 5.537 8 C 0.212 3.788 9 C -0.525 4.525 10 H 0.048 0.952 11 C 0.017 3.983 12 N -0.920 5.920 13 Si 0.950 3.050 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.102 3.898 18 C -0.124 4.124 19 C -0.042 4.042 20 C -0.181 4.181 21 C 0.123 3.877 22 O -0.327 6.327 23 C 0.013 3.987 24 C -0.007 4.007 25 F -0.141 7.141 26 C 0.112 3.888 27 F -0.124 7.124 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.115 0.885 35 H -0.012 1.012 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.165 0.835 41 H 0.181 0.819 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -5.238 12.133 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.302 3.698 5 O -0.399 6.399 6 C -0.056 4.056 7 N -0.262 5.262 8 C 0.087 3.913 9 C -0.563 4.563 10 H 0.066 0.934 11 C -0.182 4.182 12 N -0.561 5.561 13 Si 0.776 3.224 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.205 1.205 17 C -0.025 4.025 18 C -0.126 4.126 19 C -0.060 4.060 20 C -0.199 4.199 21 C 0.075 3.925 22 O -0.241 6.241 23 C -0.080 4.080 24 C -0.028 4.028 25 F -0.120 7.120 26 C 0.091 3.909 27 F -0.102 7.102 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.006 0.994 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.182 0.818 41 H 0.199 0.801 42 H 0.142 0.858 43 H 0.099 0.901 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.777 -6.020 11.711 13.190 hybrid contribution -0.125 0.149 -0.982 1.001 sum -0.902 -5.871 10.729 12.263 Atomic orbital electron populations 1.21804 0.90089 1.04300 1.03739 1.23228 0.97204 0.79522 1.02085 1.86496 1.24024 1.33507 1.84260 1.24072 0.80490 0.93097 0.72101 1.90682 1.60772 1.43500 1.44922 1.21485 0.88890 0.89549 1.05645 1.61529 1.05915 1.37997 1.20802 1.19472 0.94037 0.83332 0.94454 1.21391 1.38224 1.03677 0.93019 0.93368 1.25585 0.94985 0.95366 1.02256 1.70004 1.40005 1.09131 1.36914 0.85676 0.78047 0.77745 0.80925 1.19419 1.20681 1.20494 1.20916 0.90716 1.00846 0.89991 1.19757 0.97879 0.92422 1.02554 1.21152 0.91936 0.98283 0.94642 1.21471 0.97175 0.95948 1.05328 1.18702 0.84048 0.93167 0.96536 1.86099 1.13493 1.45775 1.78729 1.23547 0.94081 0.91123 0.99254 1.17093 0.90568 0.85018 1.10085 1.91428 1.89054 1.44402 1.87114 1.17449 0.85023 0.89423 0.98969 1.91566 1.68674 1.65675 1.84285 0.88163 0.90948 0.91472 0.92283 0.91491 0.88855 0.86744 0.99383 0.95396 0.92665 0.90770 0.91388 0.81757 0.80141 0.85754 0.90098 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.29 71.98 0.74 -1.60 16 2 C 0.05 1.31 6.19 71.98 0.45 1.76 16 3 O -0.37 -11.19 10.22 -51.41 -0.53 -11.72 16 4 C 0.46 16.70 7.50 71.24 0.53 17.23 16 5 O -0.51 -21.67 14.66 21.95 0.32 -21.35 16 6 C 0.07 2.68 5.42 85.56 0.46 3.14 16 7 N -0.54 -22.61 3.97 -909.96 -3.61 -26.22 16 8 C 0.21 10.27 4.59 85.56 0.39 10.66 16 9 C -0.52 -28.72 8.35 25.60 0.21 -28.50 16 10 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 11 C 0.02 0.95 5.46 84.66 0.46 1.41 16 12 N -0.92 -51.60 13.29 21.45 0.28 -51.32 16 13 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 C 0.10 3.62 4.42 85.55 0.38 3.99 16 18 C -0.12 -4.43 4.49 -19.81 -0.09 -4.52 16 19 C -0.04 -1.21 8.65 22.26 0.19 -1.01 16 20 C -0.18 -4.69 9.04 22.37 0.20 -4.49 16 21 C 0.12 3.84 6.69 22.53 0.15 3.99 16 22 O -0.33 -9.09 10.36 -93.01 -0.96 -10.05 16 23 C 0.01 0.21 9.81 113.37 1.11 1.32 16 24 C -0.01 -0.26 7.32 22.49 0.16 -0.10 16 25 F -0.14 -5.68 17.03 44.97 0.77 -4.92 16 26 C 0.11 4.49 7.25 22.39 0.16 4.65 16 27 F -0.12 -5.57 16.08 44.97 0.72 -4.84 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.06 1.54 8.13 -2.38 -0.02 1.52 16 32 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 33 H 0.09 2.83 8.00 -2.39 -0.02 2.81 16 34 H 0.11 4.49 7.10 -2.39 -0.02 4.47 16 35 H -0.01 -0.57 8.04 -2.39 -0.02 -0.59 16 36 H 0.03 1.43 6.11 -2.39 -0.01 1.41 16 37 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.07 2.63 6.80 -2.39 -0.02 2.62 16 39 H 0.07 2.02 7.93 -2.39 -0.02 2.00 16 40 H 0.16 3.92 8.00 -2.91 -0.02 3.90 16 41 H 0.18 3.15 6.30 -2.91 -0.02 3.13 16 42 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 44 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 Total: -1.00 -72.28 380.43 5.57 -66.71 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.03 Total: 9.97 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.53 Total: 7.93 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -3.33 Total: -77.54 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.17 Total: -43.12 kcal Atomic # 9 Polarization: -11.25 SS G_CDS: 1.49 Total: -9.76 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -72.28 5.57 -66.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143915874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.125 kcal (2) G-P(sol) polarization free energy of solvation -72.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds