Wall clock time and date at job start Wed Apr 1 2020 02:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45198 * 109.46993 * 2 1 4 4 C 1.34231 * 116.99998 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99307 * 359.97438 * 4 3 2 6 6 C 1.50689 * 120.00121 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.78442 * 40.70402 * 6 4 3 8 8 N 1.47296 * 109.76879 * 161.38725 * 6 4 3 9 9 C 1.46861 * 111.75337 * 171.72153 * 8 6 4 10 10 C 1.53549 * 109.84808 * 286.87209 * 9 8 6 11 11 C 1.50955 * 107.62880 * 49.79952 * 10 9 8 12 12 C 1.34249 * 129.13651 * 164.29072 * 11 10 9 13 13 N 1.36194 * 107.44040 * 180.49567 * 12 11 10 14 14 C 1.39716 * 126.05796 * 179.84413 * 13 12 11 15 15 C 1.39707 * 119.94470 * 179.68791 * 14 13 12 16 16 N 1.32207 * 120.33932 * 179.97438 * 15 14 13 17 17 C 1.31891 * 120.24519 * 359.75231 * 16 15 14 18 18 C 1.40727 * 119.89181 * 0.54605 * 17 16 15 19 19 C 1.41310 * 120.16868 * 179.70722 * 18 17 16 20 20 H 1.08000 * 120.00737 * 155.04326 * 19 18 17 21 21 C 1.40065 * 119.99943 * 335.04098 * 19 18 17 22 22 N 1.30735 * 119.99425 * 342.67730 * 21 19 18 23 23 Si 1.86797 * 120.00036 * 162.67976 * 21 19 18 24 24 H 1.48501 * 109.46948 * 87.93194 * 23 21 19 25 25 H 1.48491 * 109.47292 * 327.92446 * 23 21 19 26 26 H 1.48505 * 109.46694 * 207.92387 * 23 21 19 27 27 N 1.32147 * 119.95424 * 359.70605 * 14 13 12 28 28 N 1.40378 * 107.87839 * 359.57370 * 13 12 11 29 29 C 1.29923 * 108.17780 * 0.18534 * 28 13 12 30 30 H 1.08998 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47010 * 299.99830 * 1 2 3 32 32 H 1.09001 * 109.46988 * 59.99599 * 1 2 3 33 33 H 1.08994 * 109.46707 * 239.99986 * 2 1 3 34 34 H 1.08997 * 109.46722 * 119.99957 * 2 1 3 35 35 H 1.00901 * 111.00253 * 296.22403 * 8 6 4 36 36 H 1.08998 * 109.40550 * 166.75774 * 9 8 6 37 37 H 1.08998 * 109.40418 * 46.99155 * 9 8 6 38 38 H 1.08996 * 109.82856 * 290.26174 * 10 9 8 39 39 H 1.09007 * 109.87366 * 169.36052 * 10 9 8 40 40 H 1.07997 * 126.27998 * 0.35179 * 12 11 10 41 41 H 1.08000 * 119.83363 * 359.97438 * 15 14 13 42 42 H 1.08004 * 120.04731 * 180.25546 * 17 16 15 43 43 H 0.96999 * 119.98945 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.3429 3.5758 0.6682 8 7 5.3248 2.8959 0.4431 9 6 5.9875 4.1956 0.2743 10 6 6.2593 4.4526 -1.2149 11 6 4.9739 4.1990 -1.9647 12 6 4.6370 4.5566 -3.2141 13 7 3.3693 4.1120 -3.4381 14 6 2.6360 4.2774 -4.6158 15 6 1.3412 3.7610 -4.7093 16 7 0.6401 3.9135 -5.8197 17 6 1.1558 4.5591 -6.8477 18 6 2.4615 5.0778 -6.7667 19 6 3.0221 5.7651 -7.8668 20 1 3.8070 6.4897 -7.7079 21 6 2.5598 5.5066 -9.1634 22 7 1.8742 4.4208 -9.4085 23 14 2.9230 6.7133 -10.5424 24 1 4.2304 6.3782 -11.1618 25 1 2.9742 8.0919 -9.9931 26 1 1.8529 6.6287 -11.5686 27 7 3.1681 4.9216 -5.6396 28 7 2.9326 3.4527 -2.2783 29 6 3.8884 3.5022 -1.3997 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.3935 2.5763 1.3977 36 1 6.9311 4.1945 0.8198 37 1 5.3445 4.9835 0.6665 38 1 7.0352 3.7752 -1.5714 39 1 6.5750 5.4857 -1.3610 40 1 5.2566 5.0995 -3.9125 41 1 0.9107 3.2347 -3.8702 42 1 0.5786 4.6853 -7.7519 43 1 1.5537 4.2421 -10.3065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154762607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:14 Heat of formation + Delta-G solvation = 43.959627 kcal Electronic energy + Delta-G solvation = -29307.077932 eV Core-core repulsion = 25161.219998 eV Total energy + Delta-G solvation = -4145.857934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53983 -40.34310 -39.20349 -37.39317 -36.29730 -34.42565 -33.32985 -32.62302 -31.84981 -31.59260 -29.27870 -28.97127 -26.81251 -25.91928 -23.80320 -22.91050 -22.57755 -21.97597 -21.35097 -20.27854 -19.04748 -18.00506 -17.81548 -16.99183 -16.61905 -16.36054 -16.05445 -15.91070 -15.30582 -15.09507 -14.92077 -14.83192 -14.29879 -13.95189 -13.59284 -13.42216 -13.23424 -13.00173 -12.91042 -12.84795 -12.18737 -12.08541 -11.92436 -11.82069 -11.70930 -11.63399 -11.43052 -11.24260 -11.10334 -10.71406 -10.63706 -10.54448 -10.28180 -10.14415 -10.09777 -9.76191 -9.18869 -8.77108 -8.51009 -7.76900 -7.43864 -7.23904 -4.93513 1.52477 2.08816 2.35550 2.42742 2.59100 2.89169 2.91893 2.92483 2.97399 3.00717 3.65022 3.83822 4.28049 4.34229 4.57633 4.80147 4.85907 4.90235 4.93842 4.95759 5.18325 5.19227 5.31433 5.40489 5.49145 5.55240 5.68694 5.70886 5.80327 5.83516 5.91737 5.97236 6.04207 6.15003 6.23309 6.40451 6.53342 6.59652 6.71082 6.73816 6.88664 7.05676 7.33319 7.58093 7.74373 7.80318 7.98935 8.21219 8.27948 8.89504 9.34640 9.74153 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.002899 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.907039 B = 9656.023906 C =11314.058272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.348 6.348 4 C 0.474 3.526 5 O -0.486 6.486 6 C 0.194 3.806 7 H 0.092 0.908 8 N -0.669 5.669 9 C 0.067 3.933 10 C -0.034 4.034 11 C -0.233 4.233 12 C 0.092 3.908 13 N -0.300 5.300 14 C 0.331 3.669 15 C -0.083 4.083 16 N -0.425 5.425 17 C 0.008 3.992 18 C 0.250 3.750 19 C -0.416 4.416 20 H 0.095 0.905 21 C 0.075 3.925 22 N -0.775 5.775 23 Si 0.929 3.071 24 H -0.264 1.264 25 H -0.256 1.256 26 H -0.271 1.271 27 N -0.551 5.551 28 N -0.250 5.250 29 C 0.069 3.931 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.356 0.644 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.182 0.818 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -0.930 15.330 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.264 6.264 4 C 0.314 3.686 5 O -0.371 6.371 6 C 0.081 3.919 7 H 0.110 0.890 8 N -0.304 5.304 9 C -0.062 4.062 10 C -0.073 4.073 11 C -0.244 4.244 12 C -0.050 4.050 13 N -0.078 5.078 14 C 0.100 3.900 15 C -0.241 4.241 16 N -0.136 5.136 17 C -0.164 4.164 18 C 0.122 3.878 19 C -0.449 4.449 20 H 0.113 0.887 21 C -0.148 4.148 22 N -0.400 5.400 23 Si 0.752 3.248 24 H -0.189 1.189 25 H -0.179 1.179 26 H -0.196 1.196 27 N -0.275 5.275 28 N -0.070 5.070 29 C -0.101 4.101 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.176 0.824 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.199 0.801 41 H 0.160 0.840 42 H 0.183 0.817 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.460 -2.061 14.277 14.633 hybrid contribution 0.627 0.875 0.066 1.079 sum 3.087 -1.186 14.342 14.719 Atomic orbital electron populations 1.21805 0.92478 1.02844 1.03834 1.23021 0.95517 0.80004 1.02399 1.86529 1.23782 1.32424 1.83639 1.23023 0.80947 0.91635 0.72975 1.90662 1.60431 1.42247 1.43776 1.19040 0.90689 0.90089 0.92102 0.89038 1.59577 1.11916 1.30023 1.28871 1.21990 0.98541 0.88225 0.97399 1.20071 0.93453 1.01325 0.92470 1.19828 0.98770 1.10474 0.95349 1.22268 0.87129 0.98906 0.96693 1.45851 1.10719 1.41630 1.09560 1.18775 0.89634 0.97271 0.84369 1.22277 0.92182 1.11165 0.98451 1.68033 1.35149 1.11171 0.99279 1.23908 0.94937 1.00229 0.97343 1.19108 0.89661 0.90228 0.88837 1.19392 1.17909 1.18661 0.88969 0.88713 1.26099 0.92764 0.95183 1.00748 1.69717 1.25126 1.20875 1.24266 0.85955 0.79284 0.80855 0.78719 1.18926 1.17927 1.19569 1.68123 1.35931 1.22412 1.01038 1.77035 1.21776 1.16259 0.91975 1.21405 0.93460 1.00428 0.94778 0.90329 0.91602 0.90958 0.91172 0.91430 0.82411 0.89502 0.94140 0.90359 0.90485 0.80101 0.83999 0.81688 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.35 -5.03 10.22 -39.26 -0.40 -5.43 16 4 C 0.47 7.21 7.16 36.00 0.26 7.47 16 5 O -0.49 -8.35 16.30 -18.75 -0.31 -8.65 16 6 C 0.19 2.63 3.31 -69.67 -0.23 2.40 16 7 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 8 N -0.67 -7.58 5.97 -108.48 -0.65 -8.23 16 9 C 0.07 0.62 6.48 -3.56 -0.02 0.60 16 10 C -0.03 -0.40 6.52 -27.47 -0.18 -0.58 16 11 C -0.23 -3.76 5.96 -104.93 -0.62 -4.39 16 12 C 0.09 1.72 11.08 -17.02 -0.19 1.53 16 13 N -0.30 -6.52 3.82 -12.13 -0.05 -6.56 16 14 C 0.33 8.13 7.56 -154.32 -1.17 6.96 16 15 C -0.08 -2.06 10.85 -16.84 -0.18 -2.24 16 16 N -0.42 -10.90 10.47 -12.16 -0.13 -11.03 16 17 C 0.01 0.21 9.88 -16.59 -0.16 0.04 16 18 C 0.25 6.56 6.41 -84.83 -0.54 6.01 16 19 C -0.42 -10.26 9.29 -37.73 -0.35 -10.61 16 20 H 0.09 2.25 7.90 -52.49 -0.41 1.84 16 21 C 0.07 1.69 5.15 -17.33 -0.09 1.60 16 22 N -0.78 -18.14 10.95 55.55 0.61 -17.53 16 23 Si 0.93 16.66 29.59 -169.99 -5.03 11.63 16 24 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 25 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 26 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 27 N -0.55 -14.14 9.98 -10.00 -0.10 -14.24 16 28 N -0.25 -5.07 11.75 33.79 0.40 -4.67 16 29 C 0.07 1.19 6.51 -82.29 -0.54 0.65 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 34 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.36 3.11 8.89 -39.29 -0.35 2.76 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.04 0.35 8.06 -51.93 -0.42 -0.07 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 40 H 0.18 3.12 8.06 -52.49 -0.42 2.70 16 41 H 0.14 3.31 7.68 -52.49 -0.40 2.91 16 42 H 0.17 4.20 6.16 -52.48 -0.32 3.87 16 43 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -31.07 371.31 -8.74 -39.81 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.27 Total: 9.93 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -3.41 Total: 9.40 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.08 Total: -62.27 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.71 Total: -14.09 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.07 -8.74 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154762607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.767 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds