Wall clock time and date at job start Wed Apr 1 2020 02:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45198 * 109.46993 * 2 1 4 4 C 1.34231 * 116.99998 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99307 * 359.97438 * 4 3 2 6 6 C 1.50689 * 120.00121 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.78442 * 40.70402 * 6 4 3 8 8 N 1.47296 * 109.76879 * 161.38725 * 6 4 3 9 9 C 1.46861 * 111.75337 * 171.72153 * 8 6 4 10 10 C 1.53549 * 109.84808 * 286.87209 * 9 8 6 11 11 C 1.50955 * 107.62880 * 49.79952 * 10 9 8 12 12 C 1.34249 * 129.13651 * 164.29072 * 11 10 9 13 13 N 1.36194 * 107.44040 * 180.49567 * 12 11 10 14 14 C 1.39716 * 126.05796 * 179.84413 * 13 12 11 15 15 C 1.39707 * 119.94470 * 179.68791 * 14 13 12 16 16 N 1.32207 * 120.33932 * 179.97438 * 15 14 13 17 17 C 1.31891 * 120.24519 * 359.75231 * 16 15 14 18 18 C 1.40727 * 119.89181 * 0.54605 * 17 16 15 19 19 C 1.41310 * 120.16868 * 179.70722 * 18 17 16 20 20 H 1.08000 * 120.00737 * 155.04326 * 19 18 17 21 21 C 1.40065 * 119.99943 * 335.04098 * 19 18 17 22 22 N 1.30735 * 119.99425 * 342.67730 * 21 19 18 23 23 Si 1.86797 * 120.00036 * 162.67976 * 21 19 18 24 24 H 1.48501 * 109.46948 * 87.93194 * 23 21 19 25 25 H 1.48491 * 109.47292 * 327.92446 * 23 21 19 26 26 H 1.48505 * 109.46694 * 207.92387 * 23 21 19 27 27 N 1.32147 * 119.95424 * 359.70605 * 14 13 12 28 28 N 1.40378 * 107.87839 * 359.57370 * 13 12 11 29 29 C 1.29923 * 108.17780 * 0.18534 * 28 13 12 30 30 H 1.08998 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47010 * 299.99830 * 1 2 3 32 32 H 1.09001 * 109.46988 * 59.99599 * 1 2 3 33 33 H 1.08994 * 109.46707 * 239.99986 * 2 1 3 34 34 H 1.08997 * 109.46722 * 119.99957 * 2 1 3 35 35 H 1.00901 * 111.00253 * 296.22403 * 8 6 4 36 36 H 1.08998 * 109.40550 * 166.75774 * 9 8 6 37 37 H 1.08998 * 109.40418 * 46.99155 * 9 8 6 38 38 H 1.08996 * 109.82856 * 290.26174 * 10 9 8 39 39 H 1.09007 * 109.87366 * 169.36052 * 10 9 8 40 40 H 1.07997 * 126.27998 * 0.35179 * 12 11 10 41 41 H 1.08000 * 119.83363 * 359.97438 * 15 14 13 42 42 H 1.08004 * 120.04731 * 180.25546 * 17 16 15 43 43 H 0.96999 * 119.98945 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.3429 3.5758 0.6682 8 7 5.3248 2.8959 0.4431 9 6 5.9875 4.1956 0.2743 10 6 6.2593 4.4526 -1.2149 11 6 4.9739 4.1990 -1.9647 12 6 4.6370 4.5566 -3.2141 13 7 3.3693 4.1120 -3.4381 14 6 2.6360 4.2774 -4.6158 15 6 1.3412 3.7610 -4.7093 16 7 0.6401 3.9135 -5.8197 17 6 1.1558 4.5591 -6.8477 18 6 2.4615 5.0778 -6.7667 19 6 3.0221 5.7651 -7.8668 20 1 3.8070 6.4897 -7.7079 21 6 2.5598 5.5066 -9.1634 22 7 1.8742 4.4208 -9.4085 23 14 2.9230 6.7133 -10.5424 24 1 4.2304 6.3782 -11.1618 25 1 2.9742 8.0919 -9.9931 26 1 1.8529 6.6287 -11.5686 27 7 3.1681 4.9216 -5.6396 28 7 2.9326 3.4527 -2.2783 29 6 3.8884 3.5022 -1.3997 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.3935 2.5763 1.3977 36 1 6.9311 4.1945 0.8198 37 1 5.3445 4.9835 0.6665 38 1 7.0352 3.7752 -1.5714 39 1 6.5750 5.4857 -1.3610 40 1 5.2566 5.0995 -3.9125 41 1 0.9107 3.2347 -3.8702 42 1 0.5786 4.6853 -7.7519 43 1 1.5537 4.2421 -10.3065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154762607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:13 Heat of formation + Delta-G solvation = 23.400974 kcal Electronic energy + Delta-G solvation = -29307.969422 eV Core-core repulsion = 25161.219998 eV Total energy + Delta-G solvation = -4146.749424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.94338 -41.58155 -40.99651 -38.46842 -37.45123 -36.22410 -35.08920 -33.76078 -33.50715 -32.55490 -30.90148 -30.20264 -28.43575 -27.40571 -25.08118 -24.46920 -23.81905 -23.28889 -22.73608 -21.59065 -20.46452 -19.58968 -18.99866 -18.37378 -17.90185 -17.78233 -17.64200 -17.22290 -16.99308 -16.72659 -16.33319 -15.88914 -15.32161 -15.18360 -14.97539 -14.83656 -14.51491 -14.42014 -14.00901 -13.67864 -13.62465 -13.53488 -13.23158 -13.16870 -13.01938 -12.91707 -12.81155 -12.55479 -12.16536 -12.12663 -12.04859 -12.01305 -11.87354 -11.56688 -11.54706 -11.32374 -10.83412 -10.11027 -9.69028 -9.58613 -9.13570 -8.99308 -6.84631 -0.14165 0.56538 0.81048 1.08502 1.15798 1.35585 1.41172 1.51511 1.60126 1.71038 2.14342 2.50256 2.85077 3.17021 3.43872 3.47579 3.65807 3.76586 3.90216 3.91715 3.97108 4.03241 4.07348 4.08864 4.28899 4.29812 4.52716 4.64225 4.65288 4.75931 4.79448 4.84234 4.88678 4.97503 5.00779 5.04704 5.09442 5.15822 5.37277 5.41787 5.47037 5.70746 5.88932 6.01597 6.28308 6.32060 6.38665 6.45505 6.64013 6.97973 7.42236 8.02121 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.002899 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.907039 B = 9656.023906 C =11314.058272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.357 6.357 4 C 0.473 3.527 5 O -0.511 6.511 6 C 0.196 3.804 7 H 0.122 0.878 8 N -0.678 5.678 9 C 0.068 3.932 10 C -0.037 4.037 11 C -0.215 4.215 12 C 0.067 3.933 13 N -0.325 5.325 14 C 0.340 3.660 15 C -0.109 4.109 16 N -0.432 5.432 17 C -0.015 4.015 18 C 0.224 3.776 19 C -0.431 4.431 20 H 0.098 0.902 21 C 0.040 3.960 22 N -0.798 5.798 23 Si 1.008 2.992 24 H -0.258 1.258 25 H -0.252 1.252 26 H -0.258 1.258 27 N -0.568 5.568 28 N -0.282 5.282 29 C 0.073 3.927 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.373 0.627 36 H 0.123 0.877 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.187 0.813 41 H 0.148 0.852 42 H 0.164 0.836 43 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.004 0.023 16.428 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.273 6.273 4 C 0.314 3.686 5 O -0.398 6.398 6 C 0.083 3.917 7 H 0.139 0.861 8 N -0.316 5.316 9 C -0.059 4.059 10 C -0.076 4.076 11 C -0.226 4.226 12 C -0.073 4.073 13 N -0.104 5.104 14 C 0.106 3.894 15 C -0.267 4.267 16 N -0.144 5.144 17 C -0.188 4.188 18 C 0.097 3.903 19 C -0.464 4.464 20 H 0.116 0.884 21 C -0.181 4.181 22 N -0.422 5.422 23 Si 0.826 3.174 24 H -0.182 1.182 25 H -0.176 1.176 26 H -0.182 1.182 27 N -0.293 5.293 28 N -0.101 5.101 29 C -0.098 4.098 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.196 0.804 36 H 0.141 0.859 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.204 0.796 41 H 0.165 0.835 42 H 0.181 0.819 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.050 -1.121 15.413 15.975 hybrid contribution 0.212 0.491 -0.181 0.564 sum 4.262 -0.631 15.232 15.830 Atomic orbital electron populations 1.21824 0.90607 1.04389 1.03523 1.23281 0.97031 0.78969 1.02421 1.86537 1.23586 1.33928 1.83247 1.23392 0.80991 0.92081 0.72159 1.90643 1.60931 1.43190 1.45058 1.19214 0.92783 0.89341 0.90402 0.86089 1.59563 1.10285 1.31509 1.30256 1.22127 1.00333 0.87549 0.95936 1.20338 0.90768 1.02985 0.93479 1.20439 1.00088 1.07833 0.94228 1.22640 0.86467 1.00008 0.98183 1.45801 1.11674 1.43553 1.09325 1.18901 0.89777 0.95694 0.84986 1.22338 0.92967 1.12798 0.98551 1.67931 1.35688 1.11152 0.99602 1.23831 0.95297 1.02058 0.97575 1.19485 0.90151 0.90988 0.89715 1.19765 1.18245 1.18540 0.89816 0.88381 1.27109 0.91819 0.96657 1.02515 1.69736 1.24526 1.22132 1.25814 0.84806 0.79532 0.77954 0.75111 1.18203 1.17562 1.18156 1.68204 1.36118 1.23580 1.01440 1.77020 1.23479 1.17332 0.92307 1.22147 0.92865 0.99078 0.95708 0.87869 0.90397 0.92689 0.92815 0.89733 0.80447 0.85858 0.92808 0.90083 0.87971 0.79593 0.83482 0.81938 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 10.29 71.98 0.74 -1.91 16 2 C 0.06 1.32 6.19 71.98 0.45 1.77 16 3 O -0.36 -10.24 10.22 -51.43 -0.53 -10.77 16 4 C 0.47 14.00 7.16 71.23 0.51 14.51 16 5 O -0.51 -17.27 16.30 21.97 0.36 -16.91 16 6 C 0.20 4.93 3.31 43.43 0.14 5.07 16 7 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 8 N -0.68 -13.27 5.97 -497.14 -2.97 -16.24 16 9 C 0.07 0.98 6.48 86.50 0.56 1.54 16 10 C -0.04 -0.74 6.52 30.11 0.20 -0.54 16 11 C -0.22 -6.69 5.96 -20.06 -0.12 -6.81 16 12 C 0.07 2.52 11.08 83.10 0.92 3.44 16 13 N -0.32 -14.59 3.82 -192.29 -0.73 -15.32 16 14 C 0.34 17.49 7.56 133.03 1.01 18.49 16 15 C -0.11 -5.69 10.85 84.99 0.92 -4.77 16 16 N -0.43 -23.33 10.47 -192.37 -2.01 -25.35 16 17 C -0.02 -0.84 9.88 85.29 0.84 0.00 16 18 C 0.22 12.21 6.41 40.18 0.26 12.47 16 19 C -0.43 -21.67 9.29 23.47 0.22 -21.46 16 20 H 0.10 4.72 7.90 -2.91 -0.02 4.70 16 21 C 0.04 1.79 5.15 85.30 0.44 2.23 16 22 N -0.80 -37.55 10.95 21.84 0.24 -37.32 16 23 Si 1.01 33.05 29.59 68.60 2.03 35.08 16 24 H -0.26 -8.18 7.11 99.48 0.71 -7.47 16 25 H -0.25 -8.10 7.11 99.48 0.71 -7.40 16 26 H -0.26 -7.87 7.11 99.48 0.71 -7.16 16 27 N -0.57 -30.45 9.98 -185.54 -1.85 -32.30 16 28 N -0.28 -11.67 11.75 -47.00 -0.55 -12.22 16 29 C 0.07 2.46 6.51 43.56 0.28 2.74 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 35 H 0.37 5.22 8.89 -89.69 -0.80 4.42 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.68 8.06 -2.39 -0.02 0.66 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.19 6.58 8.06 -2.91 -0.02 6.55 16 41 H 0.15 7.29 7.68 -2.91 -0.02 7.27 16 42 H 0.16 8.66 6.16 -2.91 -0.02 8.64 16 43 H 0.31 12.60 8.29 -92.71 -0.77 11.84 16 Total: -1.00 -70.92 371.31 1.62 -69.30 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.27 Total: 35.26 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 7.37 Total: 26.78 kcal Atomic # 7 Polarization: -130.86 SS G_CDS: -7.88 Total: -138.74 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.17 Total: -27.67 kcal Atomic # 14 Polarization: 33.05 SS G_CDS: 2.03 Total: 35.08 kcal Total: -70.92 1.62 -69.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154762607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.701 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds