Wall clock time and date at job start Wed Apr 1 2020 02:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45203 * 109.47330 * 2 1 4 4 C 1.34815 * 117.00088 * 179.97438 * 3 2 1 5 5 O 1.21553 * 120.00260 * 359.97438 * 4 3 2 6 6 C 1.47010 * 119.99790 * 179.97438 * 4 3 2 7 7 C 1.37869 * 126.93603 * 179.97438 * 6 4 3 8 8 C 1.39842 * 105.68534 * 180.02562 * 7 6 4 9 9 N 1.30770 * 107.61133 * 359.97438 * 8 7 6 10 10 N 1.28532 * 110.99937 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.21616 * 180.02562 * 10 9 8 12 12 C 1.51138 * 107.82404 * 179.97438 * 8 7 6 13 13 N 1.48253 * 105.82521 * 17.52036 * 12 8 7 14 14 C 1.38820 * 111.01777 * 91.75925 * 13 12 8 15 15 C 1.39969 * 119.97396 * 101.41276 * 14 13 12 16 16 N 1.32121 * 120.31703 * 179.97438 * 15 14 13 17 17 C 1.31928 * 120.27969 * 359.97438 * 16 15 14 18 18 C 1.40686 * 119.92989 * 0.02562 * 17 16 15 19 19 C 1.41265 * 120.15674 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00205 * 9.13758 * 19 18 17 21 21 C 1.40058 * 120.00166 * 189.14484 * 19 18 17 22 22 N 1.30733 * 119.99690 * 9.53031 * 21 19 18 23 23 Si 1.86800 * 120.00269 * 189.53681 * 21 19 18 24 24 H 1.48503 * 109.47186 * 59.99445 * 23 21 19 25 25 H 1.48496 * 109.47296 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47186 * 299.99861 * 23 21 19 27 27 N 1.32239 * 119.96789 * 281.13050 * 14 13 12 28 28 C 1.48106 * 103.97915 * 332.32837 * 13 12 8 29 29 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47160 * 300.00009 * 1 2 3 31 31 H 1.09001 * 109.47283 * 60.00305 * 1 2 3 32 32 H 1.08997 * 109.47365 * 239.99610 * 2 1 3 33 33 H 1.09001 * 109.47283 * 119.99695 * 2 1 3 34 34 H 1.08998 * 109.46822 * 269.98400 * 11 10 9 35 35 H 1.09000 * 109.46863 * 29.97464 * 11 10 9 36 36 H 1.08991 * 109.47249 * 149.97543 * 11 10 9 37 37 H 1.09000 * 110.17798 * 136.60130 * 12 8 7 38 38 H 1.08994 * 110.18533 * 258.35652 * 12 8 7 39 39 H 1.07992 * 119.83508 * 359.97438 * 15 14 13 40 40 H 1.07995 * 120.03597 * 179.97438 * 17 16 15 41 41 H 0.97005 * 119.99477 * 180.02562 * 22 21 19 42 42 H 1.08994 * 110.20253 * 268.51564 * 28 13 12 43 43 H 1.09003 * 110.19386 * 146.71912 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5456 0.0005 5 8 4.0910 0.5816 0.0015 6 6 3.9124 2.9041 0.0000 7 6 5.2474 3.2485 0.0009 8 6 5.2772 4.6466 0.0005 9 7 4.0395 5.0687 -0.0012 10 7 3.2162 4.0816 -0.0013 11 6 1.7559 4.1995 -0.0035 12 6 6.7255 5.0785 0.0021 13 7 7.5022 3.8904 -0.4259 14 6 7.6868 3.8855 -1.8018 15 6 8.9122 4.2895 -2.3443 16 7 9.0954 4.2871 -3.6528 17 6 8.1249 3.9031 -4.4597 18 6 6.8888 3.4948 -3.9263 19 6 5.8465 3.0821 -4.7859 20 1 6.0398 2.9378 -5.8386 21 6 4.5621 2.8604 -4.2730 22 7 4.2790 3.2107 -3.0457 23 14 3.2539 2.0640 -5.3425 24 1 3.7110 0.7145 -5.7613 25 1 1.9911 1.9411 -4.5709 26 1 3.0199 2.9027 -6.5454 27 7 6.7067 3.4937 -2.5984 28 6 6.6674 2.7442 0.0018 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3924 4.2295 1.0236 35 1 1.4662 5.1155 -0.5183 36 1 1.3230 3.3414 -0.5174 37 1 6.8743 5.8980 -0.7009 38 1 7.0257 5.3841 1.0043 39 1 9.7115 4.6048 -1.6902 40 1 8.2789 3.9030 -5.5286 41 1 3.3896 3.0568 -2.6904 42 1 6.9526 2.4240 1.0039 43 1 6.7739 1.9181 -0.7013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159073572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:31 Heat of formation + Delta-G solvation = 80.426622 kcal Electronic energy + Delta-G solvation = -31460.346477 eV Core-core repulsion = 27316.069870 eV Total energy + Delta-G solvation = -4144.276606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.30787 -39.98648 -39.38518 -37.32279 -36.43755 -34.05829 -32.85679 -31.94363 -31.52230 -30.67376 -29.74517 -27.47431 -27.10072 -25.82378 -24.31072 -23.54339 -22.30961 -22.05294 -20.66289 -20.08583 -19.61668 -17.80382 -17.37061 -16.62995 -16.56749 -16.36437 -15.69416 -15.33111 -15.21942 -15.03939 -14.79687 -14.40816 -13.99248 -13.87110 -13.31226 -13.13173 -12.97315 -12.77669 -12.50931 -12.34490 -12.20403 -12.02182 -11.79495 -11.61944 -11.53566 -11.47568 -11.44881 -11.37506 -10.86626 -10.58024 -10.56099 -10.50654 -9.91216 -9.83539 -9.53370 -9.18387 -8.69901 -8.56604 -8.07664 -7.67690 -7.41201 -6.62946 -4.68683 1.47902 2.38901 2.56178 2.83456 2.87842 2.92659 2.96874 3.01603 3.14988 3.39139 3.78818 4.24787 4.42734 4.60185 4.71673 4.78875 4.84673 5.12193 5.18065 5.25386 5.37602 5.47822 5.60258 5.61969 5.65858 5.73071 5.77392 5.83171 5.96940 6.05010 6.15780 6.19276 6.30912 6.39640 6.41817 6.54072 6.79505 6.87185 6.89646 7.02889 7.19197 7.21995 7.45351 7.79594 7.88192 8.05112 8.41946 8.52289 8.66590 9.21359 9.75336 10.05029 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.005709 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.255449 B = 4903.031209 C = 6370.475757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.546 3.454 5 O -0.492 6.492 6 C 0.000 4.000 7 C -0.098 4.098 8 C -0.010 4.010 9 N -0.234 5.234 10 N -0.271 5.271 11 C 0.096 3.904 12 C 0.145 3.855 13 N -0.440 5.440 14 C 0.248 3.752 15 C -0.086 4.086 16 N -0.425 5.425 17 C -0.070 4.070 18 C 0.222 3.778 19 C -0.415 4.415 20 H 0.088 0.912 21 C 0.072 3.928 22 N -0.695 5.695 23 Si 0.901 3.099 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 N -0.467 5.467 28 C 0.125 3.875 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.268 0.732 42 H 0.091 0.909 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 -2.251 8.654 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.282 6.282 4 C 0.389 3.611 5 O -0.377 6.377 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.171 4.171 9 N -0.068 5.068 10 N -0.063 5.063 11 C -0.045 4.045 12 C 0.016 3.984 13 N -0.160 5.160 14 C 0.008 3.992 15 C -0.247 4.247 16 N -0.137 5.137 17 C -0.239 4.239 18 C 0.095 3.905 19 C -0.447 4.447 20 H 0.107 0.893 21 C -0.155 4.155 22 N -0.315 5.315 23 Si 0.725 3.275 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.187 1.187 27 N -0.187 5.187 28 C -0.004 4.004 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.426 -1.653 9.061 13.912 hybrid contribution -1.291 -1.283 -1.102 2.128 sum -11.717 -2.936 7.959 14.465 Atomic orbital electron populations 1.21806 0.92669 1.02959 1.03404 1.23007 0.95141 0.80201 1.02791 1.86552 1.24203 1.32385 1.85101 1.19740 0.80192 0.88108 0.73051 1.90870 1.60214 1.40885 1.45730 1.18814 0.90541 0.84427 1.18390 1.21299 0.93425 0.95895 1.00395 1.23082 0.93931 0.93672 1.06378 1.72398 0.99969 1.15670 1.18737 1.45588 1.06810 1.01232 1.52636 1.22110 0.73479 1.05219 1.03645 1.20940 0.82020 0.93565 1.01873 1.63371 1.39721 1.02396 1.10481 1.20942 0.92101 0.96815 0.89356 1.22166 0.96754 1.14367 0.91373 1.67711 1.32011 1.09871 1.04098 1.23129 0.92762 1.09388 0.98616 1.19174 0.92232 0.90028 0.89072 1.19495 0.92297 1.37303 0.95577 0.89349 1.26040 0.99733 0.94536 0.95239 1.70097 1.19669 1.28462 1.13243 0.86460 0.79375 0.80872 0.80768 1.18635 1.20377 1.18671 1.69463 1.27141 1.18062 1.04044 1.20856 0.84067 0.94301 1.01141 0.90254 0.91520 0.91476 0.91125 0.91159 0.90438 0.89018 0.88239 0.89992 0.88100 0.84948 0.85007 0.92056 0.89104 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.73 6.20 37.16 0.23 0.97 16 3 O -0.36 -5.37 7.70 -40.81 -0.31 -5.68 16 4 C 0.55 10.07 7.93 34.29 0.27 10.35 16 5 O -0.49 -10.19 16.71 -19.31 -0.32 -10.52 16 6 C 0.00 0.01 5.70 -82.23 -0.47 -0.46 16 7 C -0.10 -2.00 6.06 -104.16 -0.63 -2.64 16 8 C -0.01 -0.21 8.07 -82.23 -0.66 -0.87 16 9 N -0.23 -4.55 11.90 33.77 0.40 -4.15 16 10 N -0.27 -4.77 3.76 -64.03 -0.24 -5.01 16 11 C 0.10 1.20 10.81 59.85 0.65 1.85 16 12 C 0.15 2.66 6.61 -4.01 -0.03 2.63 16 13 N -0.44 -8.83 5.50 -173.39 -0.95 -9.78 16 14 C 0.25 5.84 5.25 -155.02 -0.81 5.03 16 15 C -0.09 -2.02 11.17 -16.78 -0.19 -2.20 16 16 N -0.43 -10.49 10.47 -12.11 -0.13 -10.61 16 17 C -0.07 -1.74 10.97 -16.59 -0.18 -1.92 16 18 C 0.22 5.88 6.49 -84.83 -0.55 5.33 16 19 C -0.41 -10.59 9.14 -37.75 -0.35 -10.94 16 20 H 0.09 2.10 7.87 -52.48 -0.41 1.69 16 21 C 0.07 1.75 5.45 -17.34 -0.09 1.66 16 22 N -0.69 -17.28 10.72 55.55 0.60 -16.69 16 23 Si 0.90 18.20 29.57 -169.99 -5.03 13.17 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 27 N -0.47 -12.08 6.44 -10.14 -0.07 -12.15 16 28 C 0.12 2.50 6.29 -4.31 -0.03 2.48 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.20 6.16 -51.93 -0.32 0.88 16 37 H 0.08 1.58 7.78 -51.93 -0.40 1.18 16 38 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 40 H 0.13 3.01 8.06 -52.49 -0.42 2.59 16 41 H 0.27 6.36 7.75 -40.82 -0.32 6.05 16 42 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 43 H 0.09 2.07 7.49 -51.93 -0.39 1.68 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -31.30 366.94 -8.27 -39.57 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.29 Total: 5.92 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -2.46 Total: 10.40 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.39 Total: -58.39 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.64 Total: -16.20 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.30 -8.27 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159073572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.998 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds