Wall clock time and date at job start Wed Apr 1 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45203 * 109.47330 * 2 1 4 4 C 1.34815 * 117.00088 * 179.97438 * 3 2 1 5 5 O 1.21553 * 120.00260 * 359.97438 * 4 3 2 6 6 C 1.47010 * 119.99790 * 179.97438 * 4 3 2 7 7 C 1.37869 * 126.93603 * 179.97438 * 6 4 3 8 8 C 1.39842 * 105.68534 * 180.02562 * 7 6 4 9 9 N 1.30770 * 107.61133 * 359.97438 * 8 7 6 10 10 N 1.28532 * 110.99937 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.21616 * 180.02562 * 10 9 8 12 12 C 1.51138 * 107.82404 * 179.97438 * 8 7 6 13 13 N 1.48253 * 105.82521 * 17.52036 * 12 8 7 14 14 C 1.38820 * 111.01777 * 91.75925 * 13 12 8 15 15 C 1.39969 * 119.97396 * 101.41276 * 14 13 12 16 16 N 1.32121 * 120.31703 * 179.97438 * 15 14 13 17 17 C 1.31928 * 120.27969 * 359.97438 * 16 15 14 18 18 C 1.40686 * 119.92989 * 0.02562 * 17 16 15 19 19 C 1.41265 * 120.15674 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00205 * 9.13758 * 19 18 17 21 21 C 1.40058 * 120.00166 * 189.14484 * 19 18 17 22 22 N 1.30733 * 119.99690 * 9.53031 * 21 19 18 23 23 Si 1.86800 * 120.00269 * 189.53681 * 21 19 18 24 24 H 1.48503 * 109.47186 * 59.99445 * 23 21 19 25 25 H 1.48496 * 109.47296 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47186 * 299.99861 * 23 21 19 27 27 N 1.32239 * 119.96789 * 281.13050 * 14 13 12 28 28 C 1.48106 * 103.97915 * 332.32837 * 13 12 8 29 29 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47160 * 300.00009 * 1 2 3 31 31 H 1.09001 * 109.47283 * 60.00305 * 1 2 3 32 32 H 1.08997 * 109.47365 * 239.99610 * 2 1 3 33 33 H 1.09001 * 109.47283 * 119.99695 * 2 1 3 34 34 H 1.08998 * 109.46822 * 269.98400 * 11 10 9 35 35 H 1.09000 * 109.46863 * 29.97464 * 11 10 9 36 36 H 1.08991 * 109.47249 * 149.97543 * 11 10 9 37 37 H 1.09000 * 110.17798 * 136.60130 * 12 8 7 38 38 H 1.08994 * 110.18533 * 258.35652 * 12 8 7 39 39 H 1.07992 * 119.83508 * 359.97438 * 15 14 13 40 40 H 1.07995 * 120.03597 * 179.97438 * 17 16 15 41 41 H 0.97005 * 119.99477 * 180.02562 * 22 21 19 42 42 H 1.08994 * 110.20253 * 268.51564 * 28 13 12 43 43 H 1.09003 * 110.19386 * 146.71912 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5456 0.0005 5 8 4.0910 0.5816 0.0015 6 6 3.9124 2.9041 0.0000 7 6 5.2474 3.2485 0.0009 8 6 5.2772 4.6466 0.0005 9 7 4.0395 5.0687 -0.0012 10 7 3.2162 4.0816 -0.0013 11 6 1.7559 4.1995 -0.0035 12 6 6.7255 5.0785 0.0021 13 7 7.5022 3.8904 -0.4259 14 6 7.6868 3.8855 -1.8018 15 6 8.9122 4.2895 -2.3443 16 7 9.0954 4.2871 -3.6528 17 6 8.1249 3.9031 -4.4597 18 6 6.8888 3.4948 -3.9263 19 6 5.8465 3.0821 -4.7859 20 1 6.0398 2.9378 -5.8386 21 6 4.5621 2.8604 -4.2730 22 7 4.2790 3.2107 -3.0457 23 14 3.2539 2.0640 -5.3425 24 1 3.7110 0.7145 -5.7613 25 1 1.9911 1.9411 -4.5709 26 1 3.0199 2.9027 -6.5454 27 7 6.7067 3.4937 -2.5984 28 6 6.6674 2.7442 0.0018 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3924 4.2295 1.0236 35 1 1.4662 5.1155 -0.5183 36 1 1.3230 3.3414 -0.5174 37 1 6.8743 5.8980 -0.7009 38 1 7.0257 5.3841 1.0043 39 1 9.7115 4.6048 -1.6902 40 1 8.2789 3.9030 -5.5286 41 1 3.3896 3.0568 -2.6904 42 1 6.9526 2.4240 1.0039 43 1 6.7739 1.9181 -0.7013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159073572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:30 Heat of formation + Delta-G solvation = 60.480281 kcal Electronic energy + Delta-G solvation = -31461.211415 eV Core-core repulsion = 27316.069870 eV Total energy + Delta-G solvation = -4145.141545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.74713 -41.37927 -41.10212 -38.96816 -37.76324 -35.92143 -34.31559 -33.41640 -32.86282 -32.07117 -31.39846 -28.96336 -28.65277 -27.58437 -25.55015 -25.02138 -23.93765 -23.39270 -22.35897 -21.52306 -21.02604 -19.62193 -18.74521 -18.11292 -17.90724 -17.87817 -17.22514 -17.00998 -16.86832 -16.67112 -16.40971 -15.86028 -15.12402 -15.08824 -14.94636 -14.60194 -14.28512 -14.06837 -13.75780 -13.63920 -13.42570 -13.36103 -13.33892 -13.09306 -13.05903 -13.03658 -12.91990 -12.69647 -12.52992 -12.19276 -11.94326 -11.68725 -11.63230 -11.44724 -11.40192 -10.98758 -10.39871 -10.02947 -9.60604 -9.52126 -9.21171 -8.46658 -6.61160 0.03284 0.53910 1.05594 1.28056 1.29136 1.38122 1.44607 1.53641 1.65233 1.93299 2.10339 2.66928 2.82092 2.87634 3.45968 3.73641 3.89960 3.94756 4.00241 4.06484 4.13660 4.17161 4.28402 4.35216 4.36519 4.49371 4.57141 4.60863 4.63752 4.69464 4.76692 4.81609 4.88733 4.93396 4.98187 5.03011 5.05701 5.24345 5.28781 5.38106 5.51997 5.62528 5.86216 5.94578 6.18155 6.51191 6.53917 6.77146 7.07368 7.30789 7.85491 8.22060 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.005709 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.255449 B = 4903.031209 C = 6370.475757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.548 3.452 5 O -0.523 6.523 6 C -0.008 4.008 7 C -0.125 4.125 8 C -0.027 4.027 9 N -0.244 5.244 10 N -0.261 5.261 11 C 0.084 3.916 12 C 0.148 3.852 13 N -0.430 5.430 14 C 0.245 3.755 15 C -0.093 4.093 16 N -0.432 5.432 17 C -0.091 4.091 18 C 0.193 3.807 19 C -0.439 4.439 20 H 0.096 0.904 21 C 0.029 3.971 22 N -0.710 5.710 23 Si 0.968 3.032 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.252 1.252 27 N -0.483 5.483 28 C 0.131 3.869 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.270 0.730 42 H 0.119 0.881 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 -2.323 9.517 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.393 3.607 5 O -0.411 6.411 6 C -0.131 4.131 7 C -0.137 4.137 8 C -0.185 4.185 9 N -0.079 5.079 10 N -0.052 5.052 11 C -0.054 4.054 12 C 0.020 3.980 13 N -0.151 5.151 14 C 0.004 3.996 15 C -0.254 4.254 16 N -0.144 5.144 17 C -0.259 4.259 18 C 0.066 3.934 19 C -0.470 4.470 20 H 0.114 0.886 21 C -0.196 4.196 22 N -0.329 5.329 23 Si 0.789 3.211 24 H -0.188 1.188 25 H -0.193 1.193 26 H -0.176 1.176 27 N -0.204 5.204 28 C 0.003 3.997 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.162 0.838 41 H 0.080 0.920 42 H 0.137 0.863 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.700 -1.700 9.916 16.203 hybrid contribution -0.664 -1.276 -1.289 1.931 sum -13.364 -2.976 8.627 16.183 Atomic orbital electron populations 1.21831 0.89370 1.04700 1.04015 1.23399 0.97599 0.78584 1.02549 1.86554 1.21887 1.34344 1.84220 1.19712 0.81198 0.87451 0.72370 1.90849 1.61254 1.41694 1.47331 1.19009 0.90676 0.85372 1.18069 1.21429 0.93970 0.96339 1.01987 1.23287 0.94612 0.93637 1.06996 1.72361 1.00051 1.16248 1.19192 1.46008 1.08219 1.00312 1.50663 1.22536 0.70748 1.06087 1.06066 1.21087 0.81374 0.92058 1.03519 1.63480 1.40124 1.03260 1.08192 1.21319 0.91811 0.95721 0.90727 1.22597 0.97470 1.13925 0.91382 1.67722 1.32002 1.09990 1.04724 1.23300 0.92790 1.10404 0.99381 1.19586 0.93176 0.90838 0.89830 1.19831 0.93096 1.38031 0.96073 0.88591 1.26834 1.01328 0.94880 0.96578 1.70204 1.19986 1.28419 1.14338 0.85448 0.76765 0.79635 0.79298 1.18835 1.19312 1.17576 1.69482 1.28140 1.18676 1.04066 1.20798 0.84619 0.92930 1.01393 0.87926 0.90233 0.91492 0.92380 0.90572 0.87223 0.87787 0.87712 0.91334 0.84031 0.82523 0.83776 0.91963 0.86327 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 1.14 6.20 71.98 0.45 1.59 16 3 O -0.35 -9.89 7.70 -57.27 -0.44 -10.33 16 4 C 0.55 20.05 7.93 70.12 0.56 20.61 16 5 O -0.52 -21.99 16.71 19.66 0.33 -21.66 16 6 C -0.01 -0.30 5.70 40.58 0.23 -0.07 16 7 C -0.13 -5.12 6.06 -19.57 -0.12 -5.24 16 8 C -0.03 -1.05 8.07 43.24 0.35 -0.70 16 9 N -0.24 -9.24 11.90 -47.08 -0.56 -9.80 16 10 N -0.26 -8.82 3.76 -356.49 -1.34 -10.16 16 11 C 0.08 1.90 10.81 127.77 1.38 3.28 16 12 C 0.15 5.31 6.61 85.43 0.56 5.88 16 13 N -0.43 -17.21 5.50 -702.50 -3.86 -21.07 16 14 C 0.24 11.68 5.25 133.38 0.70 12.38 16 15 C -0.09 -4.36 11.17 85.07 0.95 -3.41 16 16 N -0.43 -21.58 10.47 -192.24 -2.01 -23.59 16 17 C -0.09 -4.64 10.97 85.28 0.94 -3.71 16 18 C 0.19 10.47 6.49 40.15 0.26 10.73 16 19 C -0.44 -22.82 9.14 23.46 0.21 -22.61 16 20 H 0.10 4.64 7.87 -2.91 -0.02 4.62 16 21 C 0.03 1.43 5.45 85.30 0.47 1.89 16 22 N -0.71 -35.52 10.72 21.84 0.23 -35.29 16 23 Si 0.97 36.94 29.57 68.60 2.03 38.97 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 25 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 27 N -0.48 -25.60 6.44 -185.99 -1.20 -26.79 16 28 C 0.13 5.31 6.29 85.32 0.54 5.84 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.10 2.28 6.16 -2.39 -0.01 2.26 16 37 H 0.07 2.63 7.78 -2.39 -0.02 2.61 16 38 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 39 H 0.16 6.43 8.06 -2.91 -0.02 6.40 16 40 H 0.14 6.75 8.06 -2.91 -0.02 6.73 16 41 H 0.27 12.74 7.75 -92.70 -0.72 12.02 16 42 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 43 H 0.05 2.49 7.49 -2.39 -0.02 2.47 16 Total: -1.00 -69.21 366.94 2.50 -66.71 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 1.11 Total: 27.70 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 8.21 Total: 25.32 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -8.74 Total: -126.71 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.11 Total: -31.99 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -69.21 2.50 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159073572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.189 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds