Wall clock time and date at job start Wed Apr 1 2020 02:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45196 * 109.47167 * 2 1 4 4 C 1.34721 * 117.00063 * 179.97438 * 3 2 1 5 5 O 1.21474 * 119.99659 * 0.02562 * 4 3 2 6 6 C 1.47750 * 120.00103 * 179.97438 * 4 3 2 7 7 N 1.34829 * 126.01410 * 359.69944 * 6 4 3 8 8 C 1.30061 * 107.11403 * 179.80156 * 7 6 4 9 9 N 1.35214 * 107.84924 * 0.53026 * 8 7 6 10 10 N 1.28233 * 108.43997 * 359.57918 * 9 8 7 11 11 C 1.46780 * 123.41728 * 179.47653 * 9 8 7 12 12 C 1.53351 * 108.29786 * 343.42818 * 11 9 8 13 13 N 1.46989 * 109.69774 * 50.01012 * 12 11 9 14 14 C 1.39080 * 110.99742 * 53.28360 * 13 12 11 15 15 C 1.38745 * 119.65594 * 69.64216 * 14 13 12 16 16 C 1.40784 * 118.66993 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99406 * 180.02562 * 16 15 14 18 18 H 1.08013 * 120.00045 * 336.18177 * 17 16 15 19 19 C 1.40027 * 120.00282 * 156.18511 * 17 16 15 20 20 N 1.30743 * 119.99435 * 342.90588 * 19 17 16 21 21 Si 1.86802 * 120.00188 * 162.90495 * 19 17 16 22 22 H 1.48498 * 109.47078 * 85.37309 * 21 19 17 23 23 H 1.48492 * 109.46917 * 205.37518 * 21 19 17 24 24 H 1.48503 * 109.47190 * 325.37533 * 21 19 17 25 25 C 1.41187 * 118.01148 * 0.02562 * 16 15 14 26 26 C 1.36548 * 119.14704 * 359.97438 * 25 16 15 27 27 N 1.32100 * 121.26965 * 359.74947 * 26 25 16 28 28 C 1.47350 * 111.04416 * 289.30337 * 13 12 11 29 29 H 1.09004 * 109.47416 * 299.99855 * 1 2 3 30 30 H 1.08996 * 109.47374 * 59.99729 * 1 2 3 31 31 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46776 * 239.99670 * 2 1 3 33 33 H 1.09007 * 109.46888 * 120.00270 * 2 1 3 34 34 H 1.08998 * 109.69419 * 103.12578 * 11 9 8 35 35 H 1.08998 * 109.69906 * 223.71981 * 11 9 8 36 36 H 1.08999 * 109.43189 * 170.08083 * 12 11 9 37 37 H 1.08995 * 109.42830 * 289.93915 * 12 11 9 38 38 H 1.07999 * 120.66360 * 359.95210 * 15 14 13 39 39 H 0.97000 * 119.99385 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.42434 * 179.97438 * 25 16 15 41 41 H 1.08005 * 119.37149 * 180.02562 * 26 25 16 42 42 H 1.09004 * 109.73464 * 169.45753 * 28 13 12 43 43 H 1.09005 * 109.72971 * 290.09881 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3495 1.5454 0.0005 5 8 4.0895 0.5821 0.0005 6 6 3.9143 2.9107 0.0000 7 7 3.2095 4.0602 -0.0067 8 6 4.0691 5.0362 -0.0004 9 7 5.3089 4.4966 -0.0016 10 7 5.1954 3.2193 0.0004 11 6 6.5391 5.2973 -0.0069 12 6 6.1803 6.7283 -0.4257 13 7 5.0479 7.2105 0.3779 14 6 5.3058 7.0698 1.7373 15 6 6.2643 7.8711 2.3408 16 6 6.5082 7.7116 3.7181 17 6 7.4745 8.5033 4.3837 18 1 8.2858 8.9475 3.8259 19 6 7.3788 8.7105 5.7652 20 7 6.2528 8.4719 6.3855 21 14 8.8597 9.3277 6.7220 22 1 8.9096 10.8103 6.6548 23 1 8.7466 8.8999 8.1395 24 1 10.1003 8.7635 6.1322 25 6 5.7601 6.7383 4.4156 26 6 4.8372 5.9960 3.7362 27 7 4.6297 6.1754 2.4440 28 6 3.8011 6.5205 0.0028 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 6.9764 5.3055 0.9915 35 1 7.2499 4.8740 -0.7165 36 1 7.0404 7.3788 -0.2675 37 1 5.9072 6.7395 -1.4808 38 1 6.8125 8.6023 1.7653 39 1 6.1864 8.6158 7.3425 40 1 5.9159 6.5830 5.4730 41 1 4.2626 5.2507 4.2663 42 1 3.0201 6.7520 0.7272 43 1 3.4879 6.8408 -0.9909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165398751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:37 Heat of formation + Delta-G solvation = 58.789660 kcal Electronic energy + Delta-G solvation = -29716.584421 eV Core-core repulsion = 25571.369565 eV Total energy + Delta-G solvation = -4145.214855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.44183 -40.25604 -39.53938 -37.13411 -36.57314 -34.43399 -33.96981 -31.92961 -31.50373 -30.98303 -30.05936 -28.89932 -26.47573 -25.74478 -24.74828 -23.59477 -22.83658 -21.67105 -21.41742 -20.87979 -19.54806 -18.06816 -17.57155 -16.98889 -16.92875 -16.45172 -16.26277 -15.80745 -15.44471 -15.09395 -14.95287 -14.34448 -14.20260 -13.91761 -13.70261 -13.45184 -13.19569 -12.95560 -12.77220 -12.62421 -12.26849 -12.21161 -12.05532 -11.81252 -11.74561 -11.55124 -11.41043 -11.25586 -11.10655 -10.79811 -10.63196 -10.48302 -10.25957 -10.14281 -10.03327 -9.57025 -9.32808 -9.13158 -8.24572 -8.17510 -7.40954 -7.01143 -4.77256 1.32931 1.99105 2.23433 2.50658 2.60048 2.74192 2.93260 2.95875 3.07495 3.31029 3.72372 3.87526 4.05405 4.27877 4.44777 4.63297 4.77498 4.78369 4.83141 4.89914 5.09901 5.21151 5.34692 5.40078 5.47412 5.54768 5.61531 5.62511 5.72216 5.79928 5.85662 6.09339 6.27276 6.33854 6.60203 6.60978 6.65567 6.69805 6.75410 6.94264 7.03802 7.25459 7.41573 7.65608 7.72013 8.00748 8.29151 8.31469 8.56684 8.57234 9.33456 9.90114 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.002748 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.719210 B =10187.005191 C =10901.809503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.334 6.334 4 C 0.579 3.421 5 O -0.494 6.494 6 C 0.137 3.863 7 N -0.458 5.458 8 C 0.233 3.767 9 N -0.284 5.284 10 N -0.239 5.239 11 C 0.087 3.913 12 C 0.047 3.953 13 N -0.467 5.467 14 C 0.276 3.724 15 C -0.262 4.262 16 C 0.137 3.863 17 C -0.450 4.450 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.779 5.779 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.213 4.213 26 C 0.102 3.898 27 N -0.597 5.597 28 C 0.150 3.850 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.286 0.714 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -5.956 -10.629 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.249 6.249 4 C 0.419 3.581 5 O -0.378 6.378 6 C -0.139 4.139 7 N -0.185 5.185 8 C -0.044 4.044 9 N -0.081 5.081 10 N -0.082 5.082 11 C -0.035 4.035 12 C -0.081 4.081 13 N -0.185 5.185 14 C 0.050 3.950 15 C -0.288 4.288 16 C 0.129 3.871 17 C -0.481 4.481 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.403 5.403 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.235 4.235 26 C -0.048 4.048 27 N -0.316 5.316 28 C 0.020 3.980 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.228 -6.789 -10.924 13.539 hybrid contribution 1.456 0.073 1.452 2.057 sum -2.772 -6.716 -9.473 11.939 Atomic orbital electron populations 1.21798 0.92288 1.02852 1.03917 1.23113 0.95593 0.79712 1.02745 1.86633 1.22223 1.32213 1.83782 1.18709 0.80928 0.85658 0.72785 1.90864 1.60665 1.40814 1.45454 1.22029 0.86668 0.92555 1.12615 1.71002 1.31050 0.96410 1.19996 1.25378 0.80989 0.99299 0.98764 1.47177 1.09373 1.02735 1.48767 1.73990 1.19722 0.96174 1.18291 1.22988 0.83367 0.91322 1.05796 1.22769 0.95974 0.91088 0.98271 1.60122 1.02513 1.52541 1.03296 1.19145 0.94680 0.93558 0.87648 1.21245 1.05677 1.05526 0.96336 1.17704 0.89821 0.89261 0.90336 1.19603 1.09395 1.26731 0.92331 0.89850 1.26006 0.96678 0.93387 0.98268 1.69765 1.24709 1.34266 1.11579 0.86243 0.81704 0.79806 0.78629 1.19099 1.19926 1.18290 1.21937 1.01337 0.98715 1.01546 1.21429 0.96283 0.97709 0.89364 1.67202 1.32009 1.22793 1.09593 1.20835 0.94118 0.79602 1.03479 0.91190 0.91313 0.90174 0.91066 0.90989 0.87751 0.87493 0.86417 0.88810 0.87559 0.90325 0.85668 0.86519 0.86143 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.15 0.38 -0.83 16 2 C 0.06 0.68 6.19 37.15 0.23 0.91 16 3 O -0.33 -5.11 10.23 -40.55 -0.41 -5.53 16 4 C 0.58 10.29 7.97 34.62 0.28 10.56 16 5 O -0.49 -9.34 16.88 -19.25 -0.32 -9.66 16 6 C 0.14 2.62 7.99 -155.93 -1.25 1.38 16 7 N -0.46 -8.66 11.41 -8.44 -0.10 -8.76 16 8 C 0.23 4.06 6.28 -155.56 -0.98 3.08 16 9 N -0.28 -4.90 3.70 -57.91 -0.21 -5.11 16 10 N -0.24 -4.58 12.16 32.14 0.39 -4.19 16 11 C 0.09 1.21 6.70 -3.71 -0.02 1.19 16 12 C 0.05 0.57 5.75 -3.59 -0.02 0.55 16 13 N -0.47 -7.39 4.97 -173.89 -0.86 -8.25 16 14 C 0.28 5.52 4.48 -154.98 -0.69 4.83 16 15 C -0.26 -5.66 9.32 -38.43 -0.36 -6.02 16 16 C 0.14 3.32 5.60 -106.56 -0.60 2.72 16 17 C -0.45 -10.79 9.12 -37.65 -0.34 -11.13 16 18 H 0.08 1.89 7.90 -52.48 -0.41 1.47 16 19 C 0.08 1.78 5.19 -17.34 -0.09 1.69 16 20 N -0.78 -18.64 10.93 55.55 0.61 -18.03 16 21 Si 0.91 17.11 29.59 -169.99 -5.03 12.08 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.21 -5.15 8.74 -39.07 -0.34 -5.49 16 26 C 0.10 2.35 11.10 -18.05 -0.20 2.15 16 27 N -0.60 -13.04 7.63 -12.82 -0.10 -13.14 16 28 C 0.15 2.28 5.85 -4.66 -0.03 2.25 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.70 7.49 -51.93 -0.39 1.31 16 35 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.12 1.25 7.88 -51.93 -0.41 0.84 16 37 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.11 2.12 8.01 -52.49 -0.42 1.70 16 39 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 40 H 0.13 3.14 6.20 -52.48 -0.33 2.81 16 41 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 42 H 0.12 2.03 7.63 -51.93 -0.40 1.64 16 43 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -30.31 365.93 -9.85 -40.16 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.29 Total: 7.07 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -4.03 Total: 7.85 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.28 Total: -57.48 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.74 Total: -15.19 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.31 -9.85 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165398751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.954 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds