Wall clock time and date at job start Wed Apr 1 2020 02:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45196 * 109.47167 * 2 1 4 4 C 1.34721 * 117.00063 * 179.97438 * 3 2 1 5 5 O 1.21474 * 119.99659 * 0.02562 * 4 3 2 6 6 C 1.47750 * 120.00103 * 179.97438 * 4 3 2 7 7 N 1.34829 * 126.01410 * 359.69944 * 6 4 3 8 8 C 1.30061 * 107.11403 * 179.80156 * 7 6 4 9 9 N 1.35214 * 107.84924 * 0.53026 * 8 7 6 10 10 N 1.28233 * 108.43997 * 359.57918 * 9 8 7 11 11 C 1.46780 * 123.41728 * 179.47653 * 9 8 7 12 12 C 1.53351 * 108.29786 * 343.42818 * 11 9 8 13 13 N 1.46989 * 109.69774 * 50.01012 * 12 11 9 14 14 C 1.39080 * 110.99742 * 53.28360 * 13 12 11 15 15 C 1.38745 * 119.65594 * 69.64216 * 14 13 12 16 16 C 1.40784 * 118.66993 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99406 * 180.02562 * 16 15 14 18 18 H 1.08013 * 120.00045 * 336.18177 * 17 16 15 19 19 C 1.40027 * 120.00282 * 156.18511 * 17 16 15 20 20 N 1.30743 * 119.99435 * 342.90588 * 19 17 16 21 21 Si 1.86802 * 120.00188 * 162.90495 * 19 17 16 22 22 H 1.48498 * 109.47078 * 85.37309 * 21 19 17 23 23 H 1.48492 * 109.46917 * 205.37518 * 21 19 17 24 24 H 1.48503 * 109.47190 * 325.37533 * 21 19 17 25 25 C 1.41187 * 118.01148 * 0.02562 * 16 15 14 26 26 C 1.36548 * 119.14704 * 359.97438 * 25 16 15 27 27 N 1.32100 * 121.26965 * 359.74947 * 26 25 16 28 28 C 1.47350 * 111.04416 * 289.30337 * 13 12 11 29 29 H 1.09004 * 109.47416 * 299.99855 * 1 2 3 30 30 H 1.08996 * 109.47374 * 59.99729 * 1 2 3 31 31 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46776 * 239.99670 * 2 1 3 33 33 H 1.09007 * 109.46888 * 120.00270 * 2 1 3 34 34 H 1.08998 * 109.69419 * 103.12578 * 11 9 8 35 35 H 1.08998 * 109.69906 * 223.71981 * 11 9 8 36 36 H 1.08999 * 109.43189 * 170.08083 * 12 11 9 37 37 H 1.08995 * 109.42830 * 289.93915 * 12 11 9 38 38 H 1.07999 * 120.66360 * 359.95210 * 15 14 13 39 39 H 0.97000 * 119.99385 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.42434 * 179.97438 * 25 16 15 41 41 H 1.08005 * 119.37149 * 180.02562 * 26 25 16 42 42 H 1.09004 * 109.73464 * 169.45753 * 28 13 12 43 43 H 1.09005 * 109.72971 * 290.09881 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3495 1.5454 0.0005 5 8 4.0895 0.5821 0.0005 6 6 3.9143 2.9107 0.0000 7 7 3.2095 4.0602 -0.0067 8 6 4.0691 5.0362 -0.0004 9 7 5.3089 4.4966 -0.0016 10 7 5.1954 3.2193 0.0004 11 6 6.5391 5.2973 -0.0069 12 6 6.1803 6.7283 -0.4257 13 7 5.0479 7.2105 0.3779 14 6 5.3058 7.0698 1.7373 15 6 6.2643 7.8711 2.3408 16 6 6.5082 7.7116 3.7181 17 6 7.4745 8.5033 4.3837 18 1 8.2858 8.9475 3.8259 19 6 7.3788 8.7105 5.7652 20 7 6.2528 8.4719 6.3855 21 14 8.8597 9.3277 6.7220 22 1 8.9096 10.8103 6.6548 23 1 8.7466 8.8999 8.1395 24 1 10.1003 8.7635 6.1322 25 6 5.7601 6.7383 4.4156 26 6 4.8372 5.9960 3.7362 27 7 4.6297 6.1754 2.4440 28 6 3.8011 6.5205 0.0028 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 6.9764 5.3055 0.9915 35 1 7.2499 4.8740 -0.7165 36 1 7.0404 7.3788 -0.2675 37 1 5.9072 6.7395 -1.4808 38 1 6.8125 8.6023 1.7653 39 1 6.1864 8.6158 7.3425 40 1 5.9159 6.5830 5.4730 41 1 4.2626 5.2507 4.2663 42 1 3.0201 6.7520 0.7272 43 1 3.4879 6.8408 -0.9909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165398751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:36 Heat of formation + Delta-G solvation = 40.552426 kcal Electronic energy + Delta-G solvation = -29717.375247 eV Core-core repulsion = 25571.369565 eV Total energy + Delta-G solvation = -4146.005681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.79295 -41.54488 -41.03257 -38.62725 -37.83396 -35.99409 -35.45587 -33.06927 -32.69014 -32.65507 -31.29055 -30.49020 -28.09807 -27.15964 -26.05194 -24.81979 -23.83076 -23.30520 -22.98363 -22.19891 -20.98799 -19.36544 -19.15347 -18.28567 -18.19982 -17.82324 -17.49067 -17.32133 -16.87692 -16.53579 -16.39080 -16.01746 -15.40004 -15.16282 -14.96972 -14.86500 -14.38688 -14.31018 -14.08790 -13.77845 -13.66109 -13.55139 -13.13277 -13.08526 -13.01070 -12.93738 -12.71903 -12.57044 -12.49591 -12.14165 -12.03210 -11.88967 -11.66272 -11.61889 -11.40114 -11.24794 -10.77466 -10.49688 -10.01305 -9.91509 -9.03850 -8.72487 -6.58810 -0.05831 0.75738 0.81542 0.87323 0.94567 1.39229 1.49685 1.52945 1.56517 1.91805 2.15972 2.55478 2.73280 2.79563 3.12515 3.46844 3.58003 3.70960 3.81109 3.97073 3.97737 4.02160 4.15439 4.29139 4.35089 4.42856 4.57050 4.63805 4.70271 4.74798 4.80459 4.91164 4.94132 4.96484 4.99794 5.16947 5.22043 5.22529 5.30618 5.39978 5.45334 5.58699 5.77541 5.93651 6.28844 6.36833 6.55815 6.77321 6.81347 6.92851 7.59848 8.20500 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.002748 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.719210 B =10187.005191 C =10901.809503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.339 6.339 4 C 0.580 3.420 5 O -0.514 6.514 6 C 0.119 3.881 7 N -0.475 5.475 8 C 0.230 3.770 9 N -0.284 5.284 10 N -0.259 5.259 11 C 0.081 3.919 12 C 0.049 3.951 13 N -0.464 5.464 14 C 0.292 3.708 15 C -0.271 4.271 16 C 0.113 3.887 17 C -0.478 4.478 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.812 5.812 21 Si 0.984 3.016 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.256 1.256 25 C -0.234 4.234 26 C 0.095 3.905 27 N -0.604 5.604 28 C 0.153 3.847 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.292 0.708 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -5.257 -12.449 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.253 6.253 4 C 0.421 3.579 5 O -0.400 6.400 6 C -0.156 4.156 7 N -0.202 5.202 8 C -0.047 4.047 9 N -0.080 5.080 10 N -0.102 5.102 11 C -0.039 4.039 12 C -0.078 4.078 13 N -0.181 5.181 14 C 0.064 3.936 15 C -0.296 4.296 16 C 0.105 3.895 17 C -0.508 4.508 18 H 0.109 0.891 19 C -0.180 4.180 20 N -0.437 5.437 21 Si 0.805 3.195 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.257 4.257 26 C -0.055 4.055 27 N -0.323 5.323 28 C 0.022 3.978 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.141 0.859 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.849 -6.083 -12.771 14.660 hybrid contribution 1.242 -0.186 1.925 2.299 sum -2.607 -6.269 -10.846 12.795 Atomic orbital electron populations 1.21842 0.89778 1.04755 1.03775 1.23555 0.97487 0.77820 1.03343 1.86636 1.20732 1.34889 1.83090 1.18692 0.81644 0.85117 0.72431 1.90836 1.61285 1.41198 1.46657 1.22370 0.86887 0.93305 1.13035 1.70968 1.31809 0.96702 1.20703 1.25797 0.80959 0.99936 0.98021 1.47454 1.10261 1.02286 1.48040 1.73939 1.20021 0.97371 1.18904 1.23286 0.83041 0.92299 1.05307 1.23057 0.95310 0.89835 0.99575 1.60099 1.04192 1.52696 1.01119 1.19412 0.92926 0.91737 0.89509 1.21394 1.06371 1.06238 0.95596 1.18054 0.90191 0.89469 0.91819 1.19920 1.09953 1.27537 0.93430 0.89135 1.26873 0.99179 0.93148 0.98823 1.69828 1.26606 1.35124 1.12190 0.85167 0.77916 0.79411 0.77050 1.18264 1.19542 1.17917 1.21840 1.02834 1.00126 1.00943 1.21542 0.96126 0.97717 0.90137 1.67308 1.32563 1.23465 1.08993 1.21057 0.93187 0.78152 1.05361 0.91679 0.91065 0.87180 0.90089 0.90850 0.90554 0.84006 0.84414 0.84629 0.85893 0.89736 0.87421 0.86176 0.88000 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.29 71.98 0.74 -1.35 16 2 C 0.05 1.08 6.19 71.98 0.45 1.53 16 3 O -0.34 -10.36 10.23 -56.31 -0.58 -10.94 16 4 C 0.58 20.81 7.97 70.34 0.56 21.37 16 5 O -0.51 -19.65 16.88 19.92 0.34 -19.31 16 6 C 0.12 4.58 7.99 136.93 1.09 5.68 16 7 N -0.48 -17.72 11.41 -180.60 -2.06 -19.78 16 8 C 0.23 7.69 6.28 138.24 0.87 8.55 16 9 N -0.28 -9.41 3.70 -337.13 -1.25 -10.66 16 10 N -0.26 -9.85 12.16 -52.23 -0.64 -10.49 16 11 C 0.08 2.08 6.70 86.44 0.58 2.66 16 12 C 0.05 1.00 5.75 86.40 0.50 1.50 16 13 N -0.46 -13.42 4.97 -704.06 -3.50 -16.92 16 14 C 0.29 11.40 4.48 132.90 0.60 11.99 16 15 C -0.27 -11.57 9.32 23.01 0.21 -11.35 16 16 C 0.11 5.57 5.60 -21.12 -0.12 5.45 16 17 C -0.48 -23.22 9.12 23.52 0.21 -23.00 16 18 H 0.09 4.10 7.90 -2.90 -0.02 4.08 16 19 C 0.04 1.74 5.19 85.29 0.44 2.18 16 20 N -0.81 -39.90 10.93 21.84 0.24 -39.66 16 21 Si 0.98 34.92 29.59 68.60 2.03 36.95 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 24 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 25 C -0.23 -11.81 8.74 22.60 0.20 -11.62 16 26 C 0.10 4.52 11.10 84.26 0.94 5.46 16 27 N -0.60 -26.54 7.63 -194.47 -1.48 -28.03 16 28 C 0.15 4.26 5.85 85.51 0.50 4.76 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 2.43 7.49 -2.39 -0.02 2.41 16 35 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.14 2.36 7.88 -2.39 -0.02 2.34 16 37 H 0.14 1.77 8.07 -2.39 -0.02 1.75 16 38 H 0.12 4.72 8.01 -2.91 -0.02 4.70 16 39 H 0.29 12.98 8.29 -92.71 -0.77 12.21 16 40 H 0.11 5.71 6.20 -2.91 -0.02 5.69 16 41 H 0.12 5.44 8.06 -2.91 -0.02 5.41 16 42 H 0.10 3.30 7.63 -2.38 -0.02 3.28 16 43 H 0.15 2.87 8.14 -2.38 -0.02 2.85 16 Total: -1.00 -68.48 365.93 1.92 -66.56 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 1.05 Total: 28.45 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 7.77 Total: 23.83 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -8.69 Total: -125.54 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.24 Total: -30.24 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Total: -68.48 1.92 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165398751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.109 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds