Wall clock time and date at job start Wed Apr 1 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00212 * 2 1 4 4 O 1.21284 * 120.00245 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00293 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46957 * 59.99525 * 5 3 2 7 7 C 1.52999 * 109.46812 * 299.99854 * 5 3 2 8 8 N 1.46499 * 109.47303 * 179.97438 * 5 3 2 9 9 C 1.38592 * 119.99770 * 205.27538 * 8 5 3 10 10 N 1.31733 * 119.80339 * 359.45408 * 9 8 5 11 11 C 1.34061 * 119.78225 * 179.73461 * 10 9 8 12 12 C 1.40422 * 120.87716 * 180.24090 * 11 10 9 13 13 C 1.36206 * 119.76361 * 180.29464 * 12 11 10 14 14 C 1.39288 * 120.92444 * 0.02562 * 13 12 11 15 15 C 1.36163 * 120.91347 * 359.96016 * 14 13 12 16 16 C 1.40507 * 119.75261 * 0.03986 * 15 14 13 17 17 N 1.33971 * 120.86564 * 179.97438 * 16 15 14 18 18 C 1.31738 * 119.80546 * 180.02562 * 17 16 15 19 19 N 1.38732 * 119.79794 * 180.02562 * 18 17 16 20 20 C 1.34780 * 120.00204 * 359.97313 * 19 18 17 21 21 O 1.21735 * 119.99524 * 0.02562 * 20 19 18 22 22 C 1.46143 * 120.00294 * 180.02562 * 20 19 18 23 23 H 1.07999 * 119.99723 * 0.02562 * 22 20 19 24 24 C 1.40141 * 120.00025 * 179.97438 * 22 20 19 25 25 N 1.30629 * 119.99673 * 0.02562 * 24 22 20 26 26 Si 1.86803 * 119.99861 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46919 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.46740 * 120.00346 * 26 24 22 29 29 H 1.48501 * 109.47197 * 240.00329 * 26 24 22 30 30 H 1.08999 * 109.47069 * 300.00512 * 1 2 3 31 31 H 1.09004 * 109.46975 * 60.00424 * 1 2 3 32 32 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99980 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.46823 * 179.97438 * 7 5 3 35 35 H 1.08999 * 109.47091 * 299.99589 * 7 5 3 36 36 H 1.08996 * 109.47098 * 59.99961 * 7 5 3 37 37 H 0.97001 * 119.99790 * 24.99454 * 8 5 3 38 38 H 1.07999 * 120.11310 * 0.26987 * 12 11 10 39 39 H 1.08006 * 119.53355 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.54303 * 179.97438 * 14 13 12 41 41 H 1.07995 * 120.12504 * 180.02562 * 15 14 13 42 42 H 0.97003 * 120.00535 * 179.97438 * 19 18 17 43 43 H 0.97002 * 119.99480 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 -0.0005 5 6 3.6460 1.1672 0.0006 6 1 4.0096 0.6531 -0.8891 7 6 4.1554 0.4463 1.2502 8 7 4.1343 2.5484 -0.0002 9 6 5.3888 2.8395 -0.5123 10 7 6.1431 1.8698 -0.9877 11 6 7.3543 2.1526 -1.4879 12 6 8.1754 1.1375 -2.0051 13 6 9.4044 1.4496 -2.5022 14 6 9.8624 2.7651 -2.5055 15 6 9.0933 3.7747 -2.0125 16 6 7.8197 3.4905 -1.4914 17 7 7.0446 4.4666 -1.0002 18 6 5.8542 4.1764 -0.5162 19 7 5.0514 5.1874 -0.0081 20 6 5.4903 6.4617 -0.0100 21 8 6.5910 6.7256 -0.4581 22 6 4.6449 7.5266 0.5258 23 1 3.6686 7.2923 0.9237 24 6 5.1015 8.8515 0.5242 25 7 6.2826 9.1347 0.0434 26 14 4.0205 10.2127 1.2085 27 1 2.7400 9.6339 1.6882 28 1 4.7174 10.8769 2.3391 29 1 3.7453 11.2093 0.1425 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.9500 -0.8401 0.0004 34 1 5.2454 0.4459 1.2504 35 1 3.7917 0.9604 2.1399 36 1 3.7921 -0.5814 1.2503 37 1 3.5780 3.2597 0.3541 38 1 7.8336 0.1131 -2.0082 39 1 10.0330 0.6659 -2.8987 40 1 10.8409 2.9873 -2.9048 41 1 9.4608 4.7902 -2.0217 42 1 4.1742 4.9772 0.3487 43 1 6.5985 10.0518 0.0420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169983923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:10 Heat of formation + Delta-G solvation = 20.316657 kcal Electronic energy + Delta-G solvation = -29490.344720 eV Core-core repulsion = 25343.461550 eV Total energy + Delta-G solvation = -4146.883170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98509 -40.06137 -38.20440 -37.06731 -35.54901 -34.94205 -34.03660 -33.05435 -32.44600 -31.07982 -29.57043 -28.55281 -27.16875 -26.54887 -24.82770 -23.50659 -22.69979 -21.80688 -20.56838 -20.34179 -19.00672 -18.45109 -17.29062 -17.09654 -16.43548 -16.28059 -15.73029 -15.44394 -15.16763 -15.01635 -14.99368 -14.49750 -14.10851 -13.91744 -13.80881 -13.58799 -13.39809 -12.95504 -12.86051 -12.59917 -12.54801 -12.50914 -12.05170 -11.59947 -11.53384 -11.39119 -11.24690 -11.24242 -10.90574 -10.75966 -10.61936 -10.26824 -10.09536 -9.69938 -9.46724 -9.22508 -8.83547 -8.70319 -7.79750 -7.49631 -6.97486 -6.30802 -4.79630 0.88558 1.25154 2.34497 2.54409 2.66239 3.08096 3.16448 3.21155 3.24467 3.32410 3.81018 4.14634 4.37341 4.43694 4.55573 4.68673 4.74837 4.88132 4.91555 5.00299 5.10354 5.19605 5.22120 5.34151 5.41574 5.48479 5.59534 5.65188 5.70019 5.83718 5.90554 6.00008 6.03409 6.37522 6.48114 6.66346 6.76986 6.86629 7.04172 7.10599 7.26437 7.30506 7.48584 7.80159 7.88020 8.06100 8.12397 8.51235 8.86457 9.17644 10.42029 10.59357 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.006882 B = 0.004456 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4067.794724 B = 6281.661502 C =10103.956871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.508 3.492 4 O -0.528 6.528 5 C 0.142 3.858 6 H 0.116 0.884 7 C -0.158 4.158 8 N -0.699 5.699 9 C 0.360 3.640 10 N -0.498 5.498 11 C 0.075 3.925 12 C -0.091 4.091 13 C -0.119 4.119 14 C -0.125 4.125 15 C -0.072 4.072 16 C 0.078 3.922 17 N -0.411 5.411 18 C 0.344 3.656 19 N -0.659 5.659 20 C 0.529 3.471 21 O -0.505 6.505 22 C -0.537 4.537 23 H 0.073 0.927 24 C 0.086 3.914 25 N -0.757 5.757 26 Si 0.913 3.087 27 H -0.262 1.262 28 H -0.275 1.275 29 H -0.275 1.275 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.403 0.597 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.416 0.584 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.396 0.604 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 -20.980 -0.202 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.293 3.707 4 O -0.404 6.404 5 C 0.032 3.968 6 H 0.134 0.866 7 C -0.217 4.217 8 N -0.340 5.340 9 C 0.102 3.898 10 N -0.222 5.222 11 C -0.048 4.048 12 C -0.111 4.111 13 C -0.139 4.139 14 C -0.146 4.146 15 C -0.092 4.092 16 C -0.046 4.046 17 N -0.134 5.134 18 C 0.087 3.913 19 N -0.307 5.307 20 C 0.333 3.667 21 O -0.379 6.379 22 C -0.573 4.573 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.385 5.385 26 Si 0.738 3.262 27 H -0.186 1.186 28 H -0.200 1.200 29 H -0.200 1.200 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.237 0.763 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.256 0.744 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.231 0.769 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.234 -19.924 -0.649 20.379 hybrid contribution -1.136 0.349 0.650 1.354 sum -5.369 -19.575 0.001 20.298 Atomic orbital electron populations 1.21559 0.79268 1.02266 1.02598 1.45712 1.07872 1.08586 1.76356 1.20863 0.90166 0.83978 0.75690 1.90745 1.70026 1.31139 1.48443 1.20617 0.89388 0.85056 1.01712 0.86631 1.22153 1.03490 0.99452 0.96613 1.44028 1.14579 1.08252 1.67131 1.19173 0.87565 0.89220 0.93864 1.68015 1.05666 1.31789 1.16764 1.19068 0.91586 0.93288 1.00883 1.20459 0.93567 0.97881 0.99214 1.20708 0.95975 0.96525 1.00741 1.20736 0.99996 0.92645 1.01183 1.20767 0.91720 1.00210 0.96505 1.19513 0.96067 0.89138 0.99870 1.69163 1.02053 1.30980 1.11204 1.19650 0.90799 0.86105 0.94740 1.44686 1.18075 1.07470 1.60438 1.18614 0.87986 0.79150 0.80944 1.90756 1.20979 1.79450 1.46757 1.20851 1.03000 0.90752 1.42675 0.90877 1.25719 0.94890 0.99401 0.93490 1.69994 1.16184 1.19997 1.32373 0.86213 0.80553 0.80474 0.79005 1.18594 1.20015 1.19996 0.92043 0.92075 0.90566 0.76252 0.90387 0.91915 0.91498 0.74444 0.85704 0.86042 0.85885 0.84820 0.76914 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.73 -5.44 5.61 -67.08 -0.38 -5.82 16 3 C 0.51 5.78 7.22 -10.98 -0.08 5.70 16 4 O -0.53 -8.14 15.84 5.55 0.09 -8.06 16 5 C 0.14 1.60 2.99 -69.08 -0.21 1.39 16 6 H 0.12 1.28 7.53 -51.93 -0.39 0.89 16 7 C -0.16 -1.44 9.40 37.16 0.35 -1.09 16 8 N -0.70 -10.39 5.07 -54.65 -0.28 -10.67 16 9 C 0.36 6.55 7.50 -155.05 -1.16 5.39 16 10 N -0.50 -8.64 9.28 -9.85 -0.09 -8.73 16 11 C 0.07 1.35 6.59 -84.77 -0.56 0.79 16 12 C -0.09 -1.32 9.98 -39.49 -0.39 -1.71 16 13 C -0.12 -1.53 9.95 -39.92 -0.40 -1.93 16 14 C -0.13 -1.77 9.95 -39.94 -0.40 -2.17 16 15 C -0.07 -1.31 9.98 -39.47 -0.39 -1.70 16 16 C 0.08 1.63 6.59 -84.77 -0.56 1.07 16 17 N -0.41 -10.06 7.94 -9.81 -0.08 -10.14 16 18 C 0.34 7.67 7.46 -154.91 -1.16 6.52 16 19 N -0.66 -15.16 5.35 -12.41 -0.07 -15.23 16 20 C 0.53 14.96 7.70 -13.09 -0.10 14.86 16 21 O -0.50 -16.19 13.26 5.16 0.07 -16.12 16 22 C -0.54 -14.75 9.53 -35.70 -0.34 -15.09 16 23 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 24 C 0.09 2.34 5.50 -17.35 -0.10 2.25 16 25 N -0.76 -22.20 11.82 55.56 0.66 -21.54 16 26 Si 0.91 19.73 29.56 -169.99 -5.02 14.70 16 27 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 28 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 29 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.40 1.74 8.25 -40.82 -0.34 1.40 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 37 H 0.42 6.30 5.92 -40.82 -0.24 6.06 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 42 H 0.40 7.70 6.81 -40.82 -0.28 7.43 16 43 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -37.73 371.25 -9.35 -47.08 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -4.99 Total: 13.44 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: -4.85 Total: 15.49 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -0.23 Total: -72.13 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.17 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.73 -9.35 -47.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169983923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.395 kcal (2) G-P(sol) polarization free energy of solvation -37.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds