Wall clock time and date at job start Wed Apr 1 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00212 * 2 1 4 4 O 1.21284 * 120.00245 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00293 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46957 * 59.99525 * 5 3 2 7 7 C 1.52999 * 109.46812 * 299.99854 * 5 3 2 8 8 N 1.46499 * 109.47303 * 179.97438 * 5 3 2 9 9 C 1.38592 * 119.99770 * 205.27538 * 8 5 3 10 10 N 1.31733 * 119.80339 * 359.45408 * 9 8 5 11 11 C 1.34061 * 119.78225 * 179.73461 * 10 9 8 12 12 C 1.40422 * 120.87716 * 180.24090 * 11 10 9 13 13 C 1.36206 * 119.76361 * 180.29464 * 12 11 10 14 14 C 1.39288 * 120.92444 * 0.02562 * 13 12 11 15 15 C 1.36163 * 120.91347 * 359.96016 * 14 13 12 16 16 C 1.40507 * 119.75261 * 0.03986 * 15 14 13 17 17 N 1.33971 * 120.86564 * 179.97438 * 16 15 14 18 18 C 1.31738 * 119.80546 * 180.02562 * 17 16 15 19 19 N 1.38732 * 119.79794 * 180.02562 * 18 17 16 20 20 C 1.34780 * 120.00204 * 359.97313 * 19 18 17 21 21 O 1.21735 * 119.99524 * 0.02562 * 20 19 18 22 22 C 1.46143 * 120.00294 * 180.02562 * 20 19 18 23 23 H 1.07999 * 119.99723 * 0.02562 * 22 20 19 24 24 C 1.40141 * 120.00025 * 179.97438 * 22 20 19 25 25 N 1.30629 * 119.99673 * 0.02562 * 24 22 20 26 26 Si 1.86803 * 119.99861 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46919 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.46740 * 120.00346 * 26 24 22 29 29 H 1.48501 * 109.47197 * 240.00329 * 26 24 22 30 30 H 1.08999 * 109.47069 * 300.00512 * 1 2 3 31 31 H 1.09004 * 109.46975 * 60.00424 * 1 2 3 32 32 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99980 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.46823 * 179.97438 * 7 5 3 35 35 H 1.08999 * 109.47091 * 299.99589 * 7 5 3 36 36 H 1.08996 * 109.47098 * 59.99961 * 7 5 3 37 37 H 0.97001 * 119.99790 * 24.99454 * 8 5 3 38 38 H 1.07999 * 120.11310 * 0.26987 * 12 11 10 39 39 H 1.08006 * 119.53355 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.54303 * 179.97438 * 14 13 12 41 41 H 1.07995 * 120.12504 * 180.02562 * 15 14 13 42 42 H 0.97003 * 120.00535 * 179.97438 * 19 18 17 43 43 H 0.97002 * 119.99480 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 -0.0005 5 6 3.6460 1.1672 0.0006 6 1 4.0096 0.6531 -0.8891 7 6 4.1554 0.4463 1.2502 8 7 4.1343 2.5484 -0.0002 9 6 5.3888 2.8395 -0.5123 10 7 6.1431 1.8698 -0.9877 11 6 7.3543 2.1526 -1.4879 12 6 8.1754 1.1375 -2.0051 13 6 9.4044 1.4496 -2.5022 14 6 9.8624 2.7651 -2.5055 15 6 9.0933 3.7747 -2.0125 16 6 7.8197 3.4905 -1.4914 17 7 7.0446 4.4666 -1.0002 18 6 5.8542 4.1764 -0.5162 19 7 5.0514 5.1874 -0.0081 20 6 5.4903 6.4617 -0.0100 21 8 6.5910 6.7256 -0.4581 22 6 4.6449 7.5266 0.5258 23 1 3.6686 7.2923 0.9237 24 6 5.1015 8.8515 0.5242 25 7 6.2826 9.1347 0.0434 26 14 4.0205 10.2127 1.2085 27 1 2.7400 9.6339 1.6882 28 1 4.7174 10.8769 2.3391 29 1 3.7453 11.2093 0.1425 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.9500 -0.8401 0.0004 34 1 5.2454 0.4459 1.2504 35 1 3.7917 0.9604 2.1399 36 1 3.7921 -0.5814 1.2503 37 1 3.5780 3.2597 0.3541 38 1 7.8336 0.1131 -2.0082 39 1 10.0330 0.6659 -2.8987 40 1 10.8409 2.9873 -2.9048 41 1 9.4608 4.7902 -2.0217 42 1 4.1742 4.9772 0.3487 43 1 6.5985 10.0518 0.0420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169983923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:09 Heat of formation + Delta-G solvation = -9.466269 kcal Electronic energy + Delta-G solvation = -29491.636205 eV Core-core repulsion = 25343.461550 eV Total energy + Delta-G solvation = -4148.174655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.40997 -41.01881 -39.87968 -38.56378 -36.85462 -35.77239 -35.67464 -34.68888 -34.41991 -32.25305 -30.96071 -29.84513 -28.54684 -27.82734 -26.09217 -24.89721 -23.84014 -23.13784 -22.20778 -21.46929 -20.43792 -19.82802 -18.69535 -18.55606 -17.83852 -17.41616 -17.27413 -16.75933 -16.48882 -16.30822 -16.28747 -15.73920 -15.53788 -15.22870 -14.86273 -14.83126 -14.67883 -14.51167 -14.43485 -13.75283 -13.35824 -13.26470 -13.14860 -13.05469 -12.93453 -12.76569 -12.71042 -12.66041 -12.53675 -12.46494 -12.23328 -11.97867 -11.12588 -11.06297 -10.90151 -10.63924 -10.41866 -10.18767 -9.48966 -9.15107 -8.46909 -8.35934 -6.96430 -0.48471 -0.14668 1.13962 1.38216 1.38613 1.45761 1.57085 1.63634 1.96706 2.10839 2.29189 2.38740 2.46243 3.19630 3.21051 3.39358 3.59709 3.61389 3.69857 3.97726 4.06281 4.14732 4.18761 4.38568 4.47007 4.55658 4.62779 4.65049 4.78576 4.82151 4.97500 5.09855 5.23241 5.23574 5.28343 5.34365 5.36418 5.51634 5.56620 5.64830 5.76535 5.99183 6.09477 6.14845 6.44074 6.65641 6.75091 6.89016 7.12808 7.34420 8.35273 8.56074 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.006882 B = 0.004456 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4067.794724 B = 6281.661502 C =10103.956871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.711 5.711 3 C 0.507 3.493 4 O -0.576 6.576 5 C 0.140 3.860 6 H 0.124 0.876 7 C -0.150 4.150 8 N -0.694 5.694 9 C 0.365 3.635 10 N -0.481 5.481 11 C 0.068 3.932 12 C -0.091 4.091 13 C -0.095 4.095 14 C -0.102 4.102 15 C -0.109 4.109 16 C 0.035 3.965 17 N -0.462 5.462 18 C 0.310 3.690 19 N -0.658 5.658 20 C 0.517 3.483 21 O -0.558 6.558 22 C -0.563 4.563 23 H 0.094 0.906 24 C 0.029 3.971 25 N -0.812 5.812 26 Si 1.004 2.996 27 H -0.246 1.246 28 H -0.266 1.266 29 H -0.268 1.268 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.117 0.883 33 H 0.422 0.578 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.412 0.588 38 H 0.160 0.840 39 H 0.176 0.824 40 H 0.161 0.839 41 H 0.109 0.891 42 H 0.409 0.591 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -24.856 -0.312 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.364 5.364 3 C 0.293 3.707 4 O -0.456 6.456 5 C 0.032 3.968 6 H 0.141 0.859 7 C -0.209 4.209 8 N -0.333 5.333 9 C 0.106 3.894 10 N -0.206 5.206 11 C -0.055 4.055 12 C -0.111 4.111 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.129 4.129 16 C -0.088 4.088 17 N -0.184 5.184 18 C 0.053 3.947 19 N -0.307 5.307 20 C 0.322 3.678 21 O -0.437 6.437 22 C -0.599 4.599 23 H 0.112 0.888 24 C -0.187 4.187 25 N -0.441 5.441 26 Si 0.822 3.178 27 H -0.168 1.168 28 H -0.191 1.191 29 H -0.193 1.193 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.251 0.749 38 H 0.178 0.822 39 H 0.193 0.807 40 H 0.178 0.822 41 H 0.127 0.873 42 H 0.246 0.754 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.811 -23.948 -0.753 24.438 hybrid contribution -0.818 1.284 0.565 1.624 sum -5.629 -22.664 -0.187 23.353 Atomic orbital electron populations 1.21722 0.78299 1.04572 1.01477 1.45592 1.08474 1.08165 1.74176 1.20866 0.90058 0.84394 0.75414 1.90733 1.70725 1.33026 1.51067 1.20886 0.89626 0.83064 1.03216 0.85873 1.22117 1.02435 1.01375 0.94959 1.44145 1.13210 1.09964 1.66000 1.18959 0.88723 0.87630 0.94050 1.68153 1.05386 1.30475 1.16631 1.19574 0.92222 0.93123 1.00609 1.20909 0.93555 0.98399 0.98209 1.21315 0.95488 0.96847 0.97821 1.21205 1.00492 0.92301 0.98150 1.20837 0.92102 1.00635 0.99307 1.19922 0.96978 0.90055 1.01894 1.68919 1.03538 1.34126 1.11856 1.19824 0.90942 0.87499 0.96398 1.44036 1.18834 1.06585 1.61230 1.18977 0.87552 0.80913 0.80388 1.90703 1.22945 1.81113 1.48946 1.21398 1.03880 0.91513 1.43102 0.88832 1.27015 0.96288 1.02292 0.93087 1.70167 1.18805 1.21083 1.34073 0.84882 0.78542 0.76118 0.78231 1.16841 1.19114 1.19266 0.93001 0.93451 0.86504 0.74026 0.91856 0.92503 0.87387 0.74922 0.82226 0.80671 0.82161 0.87286 0.75357 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.70 127.77 1.37 2.27 16 2 N -0.71 -8.79 5.61 -484.52 -2.72 -11.51 16 3 C 0.51 11.03 7.22 87.66 0.63 11.66 16 4 O -0.58 -18.00 15.84 -3.04 -0.05 -18.05 16 5 C 0.14 3.01 2.99 44.25 0.13 3.14 16 6 H 0.12 2.48 7.53 -2.39 -0.02 2.46 16 7 C -0.15 -2.43 9.40 71.98 0.68 -1.76 16 8 N -0.69 -21.18 5.07 -326.80 -1.66 -22.84 16 9 C 0.36 13.78 7.50 134.00 1.00 14.79 16 10 N -0.48 -16.58 9.28 -185.08 -1.72 -18.30 16 11 C 0.07 2.43 6.59 40.18 0.26 2.70 16 12 C -0.09 -2.30 9.98 22.33 0.22 -2.08 16 13 C -0.10 -1.98 9.95 22.05 0.22 -1.76 16 14 C -0.10 -2.61 9.95 22.04 0.22 -2.40 16 15 C -0.11 -4.12 9.98 22.34 0.22 -3.90 16 16 C 0.03 1.53 6.59 40.21 0.26 1.80 16 17 N -0.46 -24.54 7.94 -184.96 -1.47 -26.01 16 18 C 0.31 14.88 7.46 133.96 1.00 15.88 16 19 N -0.66 -32.74 5.35 -311.38 -1.67 -34.40 16 20 C 0.52 31.48 7.70 86.29 0.66 32.14 16 21 O -0.56 -38.86 13.26 -4.46 -0.06 -38.92 16 22 C -0.56 -32.47 9.53 24.79 0.24 -32.23 16 23 H 0.09 4.80 7.85 -2.91 -0.02 4.77 16 24 C 0.03 1.65 5.50 85.33 0.47 2.12 16 25 N -0.81 -50.31 11.82 21.85 0.26 -50.05 16 26 Si 1.00 41.40 29.56 68.60 2.03 43.43 16 27 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 28 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 29 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.42 2.01 8.25 -92.71 -0.76 1.25 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 0.84 7.56 -2.39 -0.02 0.82 16 37 H 0.41 13.17 5.92 -92.71 -0.55 12.62 16 38 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 42 H 0.41 17.25 6.81 -92.71 -0.63 16.62 16 43 H 0.28 15.51 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -93.01 371.25 -0.29 -93.30 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -0.84 Total: 40.96 kcal Atomic # 6 Polarization: 34.77 SS G_CDS: 7.60 Total: 42.37 kcal Atomic # 7 Polarization: -154.14 SS G_CDS: -8.97 Total: -163.11 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -0.11 Total: -56.96 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -93.01 -0.29 -93.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169983923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.836 kcal (2) G-P(sol) polarization free energy of solvation -93.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds