Wall clock time and date at job start Wed Apr 1 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46760 * 124.34849 * 2 1 4 4 C 1.54472 * 105.47304 * 162.98295 * 3 2 1 5 5 C 1.54626 * 101.76550 * 25.41544 * 4 3 2 6 6 H 1.09006 * 110.48623 * 216.39295 * 5 4 3 7 7 N 1.46897 * 110.48769 * 93.88008 * 5 4 3 8 8 C 1.47899 * 111.00073 * 177.70611 * 7 5 4 9 9 C 1.53992 * 107.22876 * 214.25469 * 8 7 5 10 10 H 1.09008 * 110.30904 * 120.04350 * 9 8 7 11 11 O 1.42905 * 110.30865 * 242.21241 * 9 8 7 12 12 C 1.54597 * 105.13824 * 1.12622 * 9 8 7 13 13 H 1.08997 * 110.72804 * 263.59443 * 12 9 8 14 14 N 1.46511 * 110.72006 * 140.31417 * 12 9 8 15 15 C 1.34769 * 119.99727 * 86.45643 * 14 12 9 16 16 O 1.21280 * 120.00147 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00113 * 179.97438 * 15 14 12 18 18 S 1.80994 * 109.47513 * 179.97438 * 17 15 14 19 19 C 1.76206 * 100.00077 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99870 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99843 * 180.02562 * 19 18 17 22 22 N 1.31636 * 120.00024 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00274 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46967 * 90.00417 * 23 21 19 25 25 H 1.48495 * 109.47341 * 210.00449 * 23 21 19 26 26 H 1.48501 * 109.47060 * 330.00252 * 23 21 19 27 27 C 1.48814 * 111.18644 * 60.37198 * 7 5 4 28 28 C 1.34412 * 124.34797 * 179.97438 * 2 1 3 29 29 O 1.21289 * 124.94651 * 0.44946 * 28 2 1 30 30 H 1.09003 * 109.47235 * 90.00581 * 1 2 3 31 31 H 1.09000 * 109.46848 * 210.00155 * 1 2 3 32 32 H 1.09001 * 109.47491 * 330.00384 * 1 2 3 33 33 H 1.09008 * 110.24668 * 43.98256 * 3 2 1 34 34 H 1.09002 * 110.24682 * 281.98589 * 3 2 1 35 35 H 1.08999 * 110.97034 * 267.29334 * 4 3 2 36 36 H 1.09005 * 111.00304 * 143.54875 * 4 3 2 37 37 H 1.09000 * 109.91408 * 94.80357 * 8 7 5 38 38 H 1.09002 * 109.92107 * 333.70843 * 8 7 5 39 39 H 0.96696 * 113.99701 * 298.54011 * 11 9 8 40 40 H 0.96997 * 119.99662 * 266.45052 * 14 12 9 41 41 H 1.09000 * 109.46969 * 300.00635 * 17 15 14 42 42 H 1.09006 * 109.46572 * 59.99849 * 17 15 14 43 43 H 0.97000 * 120.00062 * 179.97438 * 22 21 19 44 44 H 1.09001 * 110.51971 * 41.07249 * 27 7 5 45 45 H 1.08999 * 110.70032 * 278.02757 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7487 0.4357 5 6 3.6897 -0.7378 0.0101 6 1 4.2346 -1.3456 0.7326 7 7 4.2688 -0.8930 -1.3309 8 6 4.3139 -2.3172 -1.7272 9 6 5.5814 -2.5136 -2.5794 10 1 6.2406 -3.2463 -2.1138 11 8 5.2309 -2.9293 -3.9010 12 6 6.2621 -1.1261 -2.6162 13 1 5.9909 -0.5873 -3.5241 14 7 7.7170 -1.2594 -2.5058 15 6 8.4607 -1.4632 -3.6110 16 8 7.9257 -1.5367 -4.6970 17 6 9.9572 -1.5997 -3.4976 18 16 10.6654 -1.8638 -5.1422 19 6 12.3727 -1.9864 -4.7241 20 1 12.6842 -1.8965 -3.6939 21 6 13.3174 -2.1976 -5.7188 22 7 14.5928 -2.2897 -5.4064 23 14 12.7788 -2.3524 -7.5008 24 1 12.7747 -1.0096 -8.1351 25 1 13.7214 -3.2402 -8.2275 26 1 11.4119 -2.9303 -7.5563 27 6 5.6797 -0.4212 -1.3655 28 6 2.2234 -1.1097 0.0005 29 8 1.7946 -2.2443 -0.0068 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.8984 1.9383 0.7102 34 1 2.3306 1.6430 -1.0004 35 1 3.8268 0.8448 1.5141 36 1 4.4758 1.3009 -0.0962 37 1 3.4298 -2.5677 -2.3134 38 1 4.3618 -2.9483 -0.8397 39 1 4.7614 -3.7739 -3.9361 40 1 8.1448 -1.2009 -1.6372 41 1 10.3732 -0.6902 -3.0642 42 1 10.1970 -2.4495 -2.8584 43 1 15.2530 -2.4376 -6.1016 44 1 6.2094 -0.7342 -0.4658 45 1 5.7210 0.6620 -1.4801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191149190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:45 Heat of formation + Delta-G solvation = -127.054845 kcal Electronic energy + Delta-G solvation = -27739.845194 eV Core-core repulsion = 23689.722716 eV Total energy + Delta-G solvation = -4050.122478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.90121 -40.89780 -39.49439 -37.60887 -36.81101 -35.55498 -34.65888 -33.25229 -31.46910 -29.59609 -29.26787 -27.91866 -27.74956 -26.73230 -23.48925 -22.74687 -21.76684 -21.58969 -20.41939 -19.87741 -18.53911 -18.26662 -17.84382 -17.77917 -17.13833 -16.95364 -16.67692 -16.53792 -16.07171 -16.02673 -15.36749 -15.06361 -14.90196 -14.87188 -14.68091 -14.56014 -14.19177 -14.04641 -13.73619 -13.65187 -13.54218 -13.33586 -13.21331 -13.13986 -13.00413 -12.74202 -12.51503 -12.35971 -12.13248 -11.98856 -11.86395 -11.18842 -11.16180 -10.93283 -10.87774 -10.50642 -10.17752 -9.77562 -9.61673 -8.98034 -8.50741 -6.20892 0.99149 1.31529 1.31659 1.48054 1.56309 1.59738 2.03335 2.16307 2.25994 2.71437 2.87340 2.87592 3.08282 3.20682 3.46959 3.51024 3.71213 3.89765 3.96456 3.98886 4.15502 4.24034 4.26546 4.29702 4.34662 4.40451 4.48695 4.50108 4.61066 4.71671 4.73385 4.82131 4.83608 4.88620 4.99824 5.10138 5.32165 5.51570 5.62584 5.71796 5.72177 6.06092 6.12495 6.46597 6.79481 6.94933 7.07049 7.24309 8.61410 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.002023 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.837811 B =13835.780735 C =14190.021554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.617 5.617 3 C 0.102 3.898 4 C -0.121 4.121 5 C 0.041 3.959 6 H 0.088 0.912 7 N -0.500 5.500 8 C 0.021 3.979 9 C 0.082 3.918 10 H 0.070 0.930 11 O -0.571 6.571 12 C 0.150 3.850 13 H 0.082 0.918 14 N -0.704 5.704 15 C 0.534 3.466 16 O -0.548 6.548 17 C -0.109 4.109 18 S -0.180 6.180 19 C -0.527 4.527 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.239 1.239 27 C 0.046 3.954 28 C 0.515 3.485 29 O -0.579 6.579 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.388 0.612 40 H 0.420 0.580 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.276 0.724 44 H 0.088 0.912 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.493 9.204 18.697 34.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.350 5.350 3 C -0.019 4.019 4 C -0.158 4.158 5 C -0.071 4.071 6 H 0.105 0.895 7 N -0.227 5.227 8 C -0.108 4.108 9 C 0.021 3.979 10 H 0.088 0.912 11 O -0.378 6.378 12 C 0.043 3.957 13 H 0.100 0.900 14 N -0.359 5.359 15 C 0.319 3.681 16 O -0.424 6.424 17 C -0.260 4.260 18 S 0.047 5.953 19 C -0.674 4.674 20 H 0.083 0.917 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.163 1.163 27 C -0.081 4.081 28 C 0.302 3.698 29 O -0.458 6.458 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.238 0.762 40 H 0.258 0.742 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -28.575 9.362 16.360 34.232 hybrid contribution 1.187 -1.460 1.367 2.326 sum -27.387 7.901 17.727 33.567 Atomic orbital electron populations 1.21691 0.77199 1.03917 1.02286 1.48323 1.07374 1.07844 1.71451 1.22336 0.90001 0.86263 1.03347 1.22853 0.97779 0.91353 1.03833 1.22642 0.92325 1.00838 0.91293 0.89453 1.64710 1.18284 1.16245 1.23420 1.23485 0.98163 0.89736 0.99392 1.23217 0.94439 0.96929 0.83351 0.91172 1.86685 1.79676 1.43900 1.27514 1.21693 0.78993 0.94420 1.00559 0.90005 1.45561 1.06249 1.74355 1.09741 1.20009 0.88183 0.75440 0.84439 1.90755 1.73740 1.49276 1.28613 1.23261 0.94253 1.07341 1.01129 1.84828 1.04068 1.95220 1.11200 1.22461 0.91003 1.56617 0.97348 0.91733 1.25535 0.94166 0.93116 1.03130 1.70014 1.01350 1.48350 1.35689 0.85890 0.80659 0.79948 0.80016 1.18666 1.18414 1.16331 1.23532 0.86728 1.02216 0.95659 1.21084 0.89976 0.84209 0.74568 1.90692 1.79529 1.23145 1.52476 0.92632 0.92171 0.87751 0.87466 0.90397 0.87158 0.86609 0.91081 0.92048 0.76245 0.74174 0.86399 0.86859 0.91408 0.89406 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.96 127.77 1.40 2.30 16 2 N -0.62 -7.95 3.33 -842.90 -2.81 -10.76 16 3 C 0.10 0.56 7.35 86.83 0.64 1.20 16 4 C -0.12 -0.49 6.66 31.65 0.21 -0.28 16 5 C 0.04 0.49 2.35 44.91 0.11 0.60 16 6 H 0.09 0.95 7.99 -2.38 -0.02 0.93 16 7 N -0.50 -7.54 5.13 -857.15 -4.39 -11.94 16 8 C 0.02 0.40 5.65 86.45 0.49 0.89 16 9 C 0.08 1.79 4.10 31.47 0.13 1.92 16 10 H 0.07 1.47 8.05 -2.38 -0.02 1.45 16 11 O -0.57 -15.93 13.26 -148.98 -1.98 -17.91 16 12 C 0.15 3.15 3.09 46.19 0.14 3.30 16 13 H 0.08 2.35 7.65 -2.39 -0.02 2.33 16 14 N -0.70 -15.31 5.14 -436.84 -2.25 -17.55 16 15 C 0.53 18.02 7.84 87.66 0.69 18.71 16 16 O -0.55 -24.00 15.59 -3.03 -0.05 -24.05 16 17 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 18 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 19 C -0.53 -30.48 10.04 67.95 0.68 -29.80 16 20 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 21 C 0.05 2.70 5.50 84.86 0.47 3.16 16 22 N -0.92 -55.60 13.97 21.65 0.30 -55.30 16 23 Si 0.91 45.33 27.74 68.60 1.90 47.24 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 27 C 0.05 0.52 5.29 86.59 0.46 0.98 16 28 C 0.51 9.76 7.20 87.90 0.63 10.39 16 29 O -0.58 -16.17 17.20 -3.06 -0.05 -16.22 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.78 7.93 -2.39 -0.02 0.76 16 32 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.12 0.17 6.30 -2.38 -0.02 0.15 16 37 H 0.07 1.66 7.96 -2.39 -0.02 1.64 16 38 H 0.06 1.13 7.67 -2.39 -0.02 1.11 16 39 H 0.39 7.58 9.11 -74.06 -0.67 6.90 16 40 H 0.42 5.69 8.53 -92.71 -0.79 4.89 16 41 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 42 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 43 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.09 0.55 7.89 -2.39 -0.02 0.53 16 45 H 0.12 0.93 7.13 -2.39 -0.02 0.91 16 Total: -1.00 -87.91 382.59 -4.36 -92.27 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.47 Total: 14.52 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 6.48 Total: 9.83 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -9.15 Total: -95.55 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -2.07 Total: -58.18 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -87.91 -4.36 -92.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191149190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.782 kcal (2) G-P(sol) polarization free energy of solvation -87.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds