Wall clock time and date at job start Wed Apr 1 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.47134 * 2 1 4 4 C 1.42906 * 113.99883 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46927 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.58392 * 55.26558 * 5 4 3 7 7 C 1.53384 * 109.57872 * 294.99468 * 5 4 3 8 8 N 1.47041 * 109.15870 * 194.69351 * 7 5 4 9 9 S 1.65602 * 120.81813 * 244.59233 * 8 7 5 10 10 O 1.42094 * 106.40025 * 23.51590 * 9 8 7 11 11 O 1.42099 * 106.40618 * 156.43900 * 9 8 7 12 12 C 1.76209 * 107.21667 * 269.98125 * 9 8 7 13 13 H 1.07994 * 119.99564 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99816 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00148 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99856 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47022 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47259 * 119.99800 * 16 14 12 19 19 H 1.48502 * 109.46822 * 239.99548 * 16 14 12 20 20 C 1.47416 * 118.36786 * 64.57141 * 8 7 5 21 21 C 1.51007 * 107.23441 * 315.71167 * 20 8 7 22 22 C 1.39199 * 128.01855 * 191.11492 * 21 20 8 23 23 N 1.31079 * 108.03272 * 180.15306 * 22 21 20 24 24 N 1.40288 * 108.26761 * 0.02562 * 23 22 21 25 25 C 1.46507 * 126.06517 * 179.86472 * 24 23 22 26 26 C 1.52997 * 109.47083 * 270.00174 * 25 24 23 27 27 C 1.34417 * 107.86728 * 359.87110 * 24 23 22 28 28 H 1.08999 * 109.47087 * 300.00710 * 1 2 3 29 29 H 1.09003 * 109.46998 * 59.99677 * 1 2 3 30 30 H 1.08992 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46997 * 239.99818 * 2 1 3 32 32 H 1.08996 * 109.47133 * 119.99664 * 2 1 3 33 33 H 1.09001 * 109.47375 * 59.99257 * 4 3 2 34 34 H 1.09001 * 109.46772 * 299.99534 * 4 3 2 35 35 H 1.08994 * 109.52145 * 74.79182 * 7 5 4 36 36 H 1.08996 * 109.52354 * 314.59407 * 7 5 4 37 37 H 0.96998 * 120.00344 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.90606 * 75.14495 * 20 8 7 39 39 H 1.09004 * 109.90339 * 196.27882 * 20 8 7 40 40 H 1.08002 * 125.98387 * 0.11779 * 22 21 20 41 41 H 1.09004 * 109.46986 * 30.00048 * 25 24 23 42 42 H 1.08993 * 109.46921 * 149.99891 * 25 24 23 43 43 H 1.08999 * 109.47249 * 300.00237 * 26 25 24 44 44 H 1.09002 * 109.47335 * 60.00134 * 26 25 24 45 45 H 1.08996 * 109.47096 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 -0.0012 6 1 3.3547 3.4424 0.8428 7 6 3.3675 3.5920 -1.3110 8 7 4.0422 4.8894 -1.4645 9 16 3.1772 6.3015 -1.4584 10 8 1.9688 6.0287 -0.7625 11 8 4.0831 7.3255 -1.0709 12 6 2.7243 6.6430 -3.1267 13 1 3.0229 5.9690 -3.9160 14 6 1.9897 7.7711 -3.4245 15 7 1.6266 8.5921 -2.4633 16 14 1.5103 8.1335 -5.1932 17 1 2.0376 7.0638 -6.0781 18 1 0.0303 8.1838 -5.3045 19 1 2.0822 9.4412 -5.6030 20 6 5.5077 4.9023 -1.6236 21 6 6.0762 3.9379 -0.6101 22 6 7.4073 3.7700 -0.2391 23 7 7.4595 2.8259 0.6688 24 7 6.1547 2.3654 0.8998 25 6 5.7661 1.3104 1.8392 26 6 5.7948 -0.0431 1.1264 27 6 5.3243 3.0637 0.1062 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8334 0.9766 -0.8907 34 1 3.8341 0.9765 0.8892 35 1 2.2885 3.7435 -1.2846 36 1 3.6253 2.9459 -2.1501 37 1 1.1095 9.3855 -2.6728 38 1 5.7745 4.5821 -2.6307 39 1 5.8924 5.9052 -1.4380 40 1 8.2496 4.3208 -0.6310 41 1 6.4634 1.2948 2.6768 42 1 4.7592 1.5054 2.2082 43 1 5.0976 -0.0275 0.2887 44 1 6.8018 -0.2381 0.7573 45 1 5.5053 -0.8279 1.8251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:53 Heat of formation + Delta-G solvation = -48.666162 kcal Electronic energy + Delta-G solvation = -29580.029332 eV Core-core repulsion = 25533.306043 eV Total energy + Delta-G solvation = -4046.723289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52241 -38.37112 -36.51927 -35.31906 -35.03083 -33.91228 -33.05152 -32.42840 -30.93922 -29.84717 -29.43158 -26.08904 -25.82335 -24.38980 -23.31232 -22.90614 -22.24937 -20.34014 -19.18539 -18.55585 -17.30408 -16.92244 -16.68155 -16.34012 -15.83514 -15.52541 -15.06946 -14.86191 -14.80916 -14.40404 -14.07462 -13.95428 -13.56416 -13.36139 -13.13463 -13.04401 -12.81076 -12.54816 -12.36598 -12.19782 -12.00957 -11.92540 -11.65769 -11.50958 -11.37859 -11.20679 -11.16285 -11.07485 -10.93384 -10.55779 -10.51506 -10.24316 -10.13390 -10.03957 -9.67003 -9.22552 -9.20503 -8.89218 -8.29103 -8.01843 -6.66325 -5.28221 1.92460 2.27031 2.49032 2.93818 3.08123 3.16286 3.23746 3.48779 4.07968 4.34795 4.51819 4.64704 4.67398 4.71179 4.72937 4.87286 4.91125 4.96330 5.03169 5.14433 5.14603 5.20576 5.25310 5.40240 5.50542 5.54224 5.57431 5.59861 5.78048 5.79686 5.83423 5.91216 6.00241 6.02828 6.07475 6.14508 6.27343 6.38897 6.44602 6.74449 6.90855 7.08222 7.11220 7.36113 7.56788 7.81624 8.02128 8.92709 10.27284 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.004277 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.014675 B = 6544.846040 C = 8253.750897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.378 6.378 4 C 0.057 3.943 5 C -0.041 4.041 6 H 0.104 0.896 7 C 0.145 3.855 8 N -1.013 6.013 9 S 2.714 3.286 10 O -1.001 7.001 11 O -1.002 7.002 12 C -1.019 5.019 13 H 0.103 0.897 14 C 0.133 3.867 15 N -0.846 5.846 16 Si 0.920 3.080 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.199 3.801 21 C -0.237 4.237 22 C 0.061 3.939 23 N -0.303 5.303 24 N -0.367 5.367 25 C 0.123 3.877 26 C -0.181 4.181 27 C 0.100 3.900 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.290 0.710 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.186 0.814 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.733 -18.466 4.141 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.020 4.020 5 C -0.063 4.063 6 H 0.122 0.878 7 C 0.018 3.982 8 N -0.846 5.846 9 S 2.816 3.184 10 O -0.991 6.991 11 O -0.992 6.992 12 C -1.153 5.153 13 H 0.122 0.878 14 C -0.085 4.085 15 N -0.476 5.476 16 Si 0.744 3.256 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.196 1.196 20 C 0.072 3.928 21 C -0.249 4.249 22 C -0.125 4.125 23 N -0.124 5.124 24 N -0.150 5.150 25 C 0.002 3.998 26 C -0.239 4.239 27 C -0.028 4.028 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.203 0.797 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.057 -18.426 5.874 19.990 hybrid contribution -0.505 0.258 -1.956 2.036 sum 4.552 -18.168 3.918 19.135 Atomic orbital electron populations 1.21750 0.93563 1.01999 1.03722 1.22456 0.95873 0.83827 0.99735 1.87985 1.20212 1.26174 1.95329 1.23068 0.82141 0.95977 1.00852 1.20310 0.87743 0.95386 1.02837 0.87848 1.21118 0.98660 0.84863 0.93588 1.58387 1.14833 1.21755 1.89668 1.00561 0.71783 0.69586 0.76491 1.93358 1.46023 1.83989 1.75722 1.93347 1.66106 1.54702 1.85057 1.30656 1.48344 1.17808 1.18450 0.87841 1.24753 0.90797 0.92935 1.00014 1.69907 1.31672 1.12229 1.33766 0.86146 0.78749 0.78990 0.81757 1.18579 1.19626 1.19611 1.19712 0.79323 0.98511 0.95285 1.20289 0.92842 1.05098 1.06679 1.23501 0.97051 0.96346 0.95579 1.77444 0.97964 1.16267 1.20701 1.48360 1.04557 1.29686 1.32385 1.21750 1.01720 0.85180 0.91180 1.22469 1.03785 0.95851 1.01797 1.20483 0.92943 0.95020 0.94339 0.91674 0.91408 0.91329 0.93473 0.93699 0.92668 0.91923 0.87449 0.91692 0.89964 0.91258 0.87991 0.79750 0.88647 0.88780 0.91294 0.91369 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.55 6.66 37.16 0.25 0.80 16 3 O -0.38 -4.94 10.11 -35.23 -0.36 -5.29 16 4 C 0.06 0.67 3.77 37.16 0.14 0.82 16 5 C -0.04 -0.63 2.76 -91.53 -0.25 -0.88 16 6 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 7 C 0.15 2.58 5.46 -3.55 -0.02 2.56 16 8 N -1.01 -20.96 3.26 -114.17 -0.37 -21.34 16 9 S 2.71 72.66 5.01 -107.50 -0.54 72.12 16 10 O -1.00 -29.22 16.72 -57.17 -0.96 -30.18 16 11 O -1.00 -29.34 16.64 -57.17 -0.95 -30.30 16 12 C -1.02 -28.10 9.75 30.60 0.30 -27.80 16 13 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 14 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 15 N -0.85 -24.96 13.19 55.43 0.73 -24.23 16 16 Si 0.92 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 C 0.20 3.55 6.87 -4.54 -0.03 3.52 16 21 C -0.24 -3.89 6.01 -105.01 -0.63 -4.52 16 22 C 0.06 0.88 12.00 -17.52 -0.21 0.67 16 23 N -0.30 -4.58 12.59 30.53 0.38 -4.19 16 24 N -0.37 -5.11 3.60 -57.12 -0.21 -5.31 16 25 C 0.12 1.20 6.23 -4.04 -0.03 1.17 16 26 C -0.18 -1.40 9.46 37.16 0.35 -1.05 16 27 C 0.10 1.56 6.27 -82.31 -0.52 1.05 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.61 7.53 -51.93 -0.39 0.22 16 34 H 0.06 0.61 3.32 -51.93 -0.17 0.44 16 35 H 0.11 2.07 7.09 -51.93 -0.37 1.70 16 36 H 0.06 1.00 8.02 -51.93 -0.42 0.59 16 37 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 1.92 6.95 -51.93 -0.36 1.55 16 40 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.82 6.48 -51.93 -0.34 0.48 16 43 H 0.07 0.56 5.16 -51.93 -0.27 0.30 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -36.84 373.14 -8.54 -45.37 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.51 Total: 3.21 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.36 Total: -21.04 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.54 Total: -55.07 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -2.26 Total: -65.77 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 72.66 SS G_CDS: -0.54 Total: 72.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.84 -8.54 -45.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.294 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds