Wall clock time and date at job start Wed Apr 1 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.47134 * 2 1 4 4 C 1.42906 * 113.99883 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46927 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.58392 * 55.26558 * 5 4 3 7 7 C 1.53384 * 109.57872 * 294.99468 * 5 4 3 8 8 N 1.47041 * 109.15870 * 194.69351 * 7 5 4 9 9 S 1.65602 * 120.81813 * 244.59233 * 8 7 5 10 10 O 1.42094 * 106.40025 * 23.51590 * 9 8 7 11 11 O 1.42099 * 106.40618 * 156.43900 * 9 8 7 12 12 C 1.76209 * 107.21667 * 269.98125 * 9 8 7 13 13 H 1.07994 * 119.99564 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99816 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00148 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99856 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47022 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47259 * 119.99800 * 16 14 12 19 19 H 1.48502 * 109.46822 * 239.99548 * 16 14 12 20 20 C 1.47416 * 118.36786 * 64.57141 * 8 7 5 21 21 C 1.51007 * 107.23441 * 315.71167 * 20 8 7 22 22 C 1.39199 * 128.01855 * 191.11492 * 21 20 8 23 23 N 1.31079 * 108.03272 * 180.15306 * 22 21 20 24 24 N 1.40288 * 108.26761 * 0.02562 * 23 22 21 25 25 C 1.46507 * 126.06517 * 179.86472 * 24 23 22 26 26 C 1.52997 * 109.47083 * 270.00174 * 25 24 23 27 27 C 1.34417 * 107.86728 * 359.87110 * 24 23 22 28 28 H 1.08999 * 109.47087 * 300.00710 * 1 2 3 29 29 H 1.09003 * 109.46998 * 59.99677 * 1 2 3 30 30 H 1.08992 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46997 * 239.99818 * 2 1 3 32 32 H 1.08996 * 109.47133 * 119.99664 * 2 1 3 33 33 H 1.09001 * 109.47375 * 59.99257 * 4 3 2 34 34 H 1.09001 * 109.46772 * 299.99534 * 4 3 2 35 35 H 1.08994 * 109.52145 * 74.79182 * 7 5 4 36 36 H 1.08996 * 109.52354 * 314.59407 * 7 5 4 37 37 H 0.96998 * 120.00344 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.90606 * 75.14495 * 20 8 7 39 39 H 1.09004 * 109.90339 * 196.27882 * 20 8 7 40 40 H 1.08002 * 125.98387 * 0.11779 * 22 21 20 41 41 H 1.09004 * 109.46986 * 30.00048 * 25 24 23 42 42 H 1.08993 * 109.46921 * 149.99891 * 25 24 23 43 43 H 1.08999 * 109.47249 * 300.00237 * 26 25 24 44 44 H 1.09002 * 109.47335 * 60.00134 * 26 25 24 45 45 H 1.08996 * 109.47096 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 -0.0012 6 1 3.3547 3.4424 0.8428 7 6 3.3675 3.5920 -1.3110 8 7 4.0422 4.8894 -1.4645 9 16 3.1772 6.3015 -1.4584 10 8 1.9688 6.0287 -0.7625 11 8 4.0831 7.3255 -1.0709 12 6 2.7243 6.6430 -3.1267 13 1 3.0229 5.9690 -3.9160 14 6 1.9897 7.7711 -3.4245 15 7 1.6266 8.5921 -2.4633 16 14 1.5103 8.1335 -5.1932 17 1 2.0376 7.0638 -6.0781 18 1 0.0303 8.1838 -5.3045 19 1 2.0822 9.4412 -5.6030 20 6 5.5077 4.9023 -1.6236 21 6 6.0762 3.9379 -0.6101 22 6 7.4073 3.7700 -0.2391 23 7 7.4595 2.8259 0.6688 24 7 6.1547 2.3654 0.8998 25 6 5.7661 1.3104 1.8392 26 6 5.7948 -0.0431 1.1264 27 6 5.3243 3.0637 0.1062 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8334 0.9766 -0.8907 34 1 3.8341 0.9765 0.8892 35 1 2.2885 3.7435 -1.2846 36 1 3.6253 2.9459 -2.1501 37 1 1.1095 9.3855 -2.6728 38 1 5.7745 4.5821 -2.6307 39 1 5.8924 5.9052 -1.4380 40 1 8.2496 4.3208 -0.6310 41 1 6.4634 1.2948 2.6768 42 1 4.7592 1.5054 2.2082 43 1 5.0976 -0.0275 0.2887 44 1 6.8018 -0.2381 0.7573 45 1 5.5053 -0.8279 1.8251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:53 Heat of formation + Delta-G solvation = -76.923857 kcal Electronic energy + Delta-G solvation = -29581.254678 eV Core-core repulsion = 25533.306043 eV Total energy + Delta-G solvation = -4047.948635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.66638 -39.33454 -37.87340 -37.46198 -36.13107 -36.01665 -35.15899 -33.53583 -31.81753 -31.11960 -30.44070 -28.24127 -26.96380 -25.57087 -24.40153 -23.64483 -23.41626 -21.40539 -20.87750 -20.26913 -18.74772 -18.45460 -17.88742 -17.64316 -17.29317 -16.83483 -16.55149 -16.37984 -15.96126 -15.73621 -15.42319 -15.25648 -14.87772 -14.65154 -14.38677 -14.11839 -13.97280 -13.85876 -13.53150 -13.42080 -13.22146 -13.06937 -13.01022 -12.89518 -12.81337 -12.58599 -12.49284 -12.32728 -12.27791 -12.26162 -12.07355 -11.99310 -11.68110 -11.59160 -11.25012 -10.96272 -10.52358 -10.29223 -9.91365 -9.24794 -8.73230 -7.47354 0.27718 0.77191 1.35049 1.35584 1.49207 1.53962 1.75532 2.22298 2.59038 2.59058 2.76187 3.50457 3.52214 3.64183 3.78416 3.82887 4.02776 4.04816 4.07979 4.17384 4.21777 4.23758 4.31575 4.40359 4.41570 4.48756 4.55510 4.57255 4.64901 4.69364 4.76137 4.79581 4.83999 4.89344 4.93679 5.04343 5.08778 5.18905 5.26189 5.33208 5.41084 5.65307 5.88550 5.92928 6.03469 6.27198 6.67673 6.79384 8.22618 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.004277 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.014675 B = 6544.846040 C = 8253.750897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 O -0.409 6.409 4 C 0.066 3.934 5 C -0.038 4.038 6 H 0.082 0.918 7 C 0.139 3.861 8 N -1.010 6.010 9 S 2.717 3.283 10 O -1.038 7.038 11 O -1.039 7.039 12 C -1.038 5.038 13 H 0.121 0.879 14 C 0.069 3.931 15 N -0.895 5.895 16 Si 0.992 3.008 17 H -0.245 1.245 18 H -0.259 1.259 19 H -0.258 1.258 20 C 0.196 3.804 21 C -0.261 4.261 22 C 0.061 3.939 23 N -0.315 5.315 24 N -0.361 5.361 25 C 0.109 3.891 26 C -0.174 4.174 27 C 0.096 3.904 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.299 0.701 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.212 0.788 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -21.155 3.095 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.026 4.026 3 O -0.329 6.329 4 C -0.011 4.011 5 C -0.060 4.060 6 H 0.100 0.900 7 C 0.013 3.987 8 N -0.847 5.847 9 S 2.820 3.180 10 O -1.028 7.028 11 O -1.029 7.029 12 C -1.172 5.172 13 H 0.139 0.861 14 C -0.143 4.143 15 N -0.527 5.527 16 Si 0.809 3.191 17 H -0.168 1.168 18 H -0.183 1.183 19 H -0.183 1.183 20 C 0.070 3.930 21 C -0.274 4.274 22 C -0.123 4.123 23 N -0.136 5.136 24 N -0.143 5.143 25 C -0.011 4.011 26 C -0.231 4.231 27 C -0.034 4.034 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.229 0.771 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.738 -21.146 4.866 22.445 hybrid contribution -0.693 1.004 -1.530 1.957 sum 5.044 -20.143 3.336 21.031 Atomic orbital electron populations 1.21800 0.93599 1.03342 1.02431 1.22708 0.95937 0.82425 1.01505 1.87959 1.20701 1.28645 1.95626 1.23036 0.82068 0.93298 1.02714 1.20194 0.87732 0.97659 1.00433 0.89959 1.21321 0.97300 0.83857 0.96221 1.57859 1.15943 1.21081 1.89784 1.00061 0.71204 0.70238 0.76462 1.93297 1.48032 1.84873 1.76625 1.93285 1.66734 1.57260 1.85634 1.30990 1.48570 1.18539 1.19077 0.86073 1.26054 0.90364 0.92482 1.05439 1.70003 1.32848 1.13246 1.36600 0.85087 0.79069 0.79686 0.75223 1.16828 1.18343 1.18263 1.19860 0.77296 0.98409 0.97423 1.20285 0.94022 1.05566 1.07546 1.23899 0.97130 0.96208 0.95111 1.77414 0.98697 1.16593 1.20886 1.48685 1.03804 1.29768 1.32054 1.22193 1.02604 0.85162 0.91138 1.22430 1.03295 0.95189 1.02218 1.20458 0.92935 0.95263 0.94702 0.92686 0.92990 0.88662 0.92065 0.91404 0.91298 0.89373 0.89694 0.88943 0.89112 0.88706 0.89689 0.77110 0.87478 0.87737 0.91477 0.92265 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.28 71.98 0.74 -1.82 16 2 C 0.05 0.84 6.66 71.98 0.48 1.32 16 3 O -0.41 -10.25 10.11 -148.98 -1.51 -11.76 16 4 C 0.07 1.44 3.77 71.98 0.27 1.71 16 5 C -0.04 -1.16 2.76 -11.38 -0.03 -1.19 16 6 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 7 C 0.14 5.00 5.46 86.41 0.47 5.47 16 8 N -1.01 -42.75 3.26 -515.13 -1.68 -44.43 16 9 S 2.72 151.34 5.01 -56.49 -0.28 151.06 16 10 O -1.04 -63.76 16.72 -128.00 -2.14 -65.90 16 11 O -1.04 -63.74 16.64 -128.00 -2.13 -65.87 16 12 C -1.04 -58.11 9.75 67.73 0.66 -57.45 16 13 H 0.12 6.10 7.81 -2.91 -0.02 6.08 16 14 C 0.07 3.90 5.46 84.65 0.46 4.36 16 15 N -0.90 -54.27 13.19 21.45 0.28 -53.99 16 16 Si 0.99 41.55 29.54 68.60 2.03 43.58 16 17 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 20 C 0.20 7.04 6.87 85.56 0.59 7.63 16 21 C -0.26 -8.45 6.01 -20.11 -0.12 -8.57 16 22 C 0.06 1.71 12.00 85.04 1.02 2.73 16 23 N -0.31 -9.00 12.59 -57.33 -0.72 -9.72 16 24 N -0.36 -9.42 3.60 -334.64 -1.21 -10.63 16 25 C 0.11 1.83 6.23 86.38 0.54 2.37 16 26 C -0.17 -2.09 9.46 71.98 0.68 -1.41 16 27 C 0.10 2.92 6.27 41.62 0.26 3.18 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 1.33 7.53 -2.39 -0.02 1.32 16 34 H 0.09 1.46 3.32 -2.39 -0.01 1.45 16 35 H 0.08 3.42 7.09 -2.39 -0.02 3.41 16 36 H 0.09 2.77 8.02 -2.39 -0.02 2.75 16 37 H 0.30 16.18 8.31 -92.71 -0.77 15.41 16 38 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.08 3.31 6.95 -2.38 -0.02 3.29 16 40 H 0.21 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.10 1.55 6.48 -2.39 -0.02 1.53 16 43 H 0.07 0.85 5.16 -2.39 -0.01 0.84 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -83.10 373.14 -0.33 -83.44 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 1.00 Total: 25.90 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 6.02 Total: -41.67 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -3.33 Total: -118.76 kcal Atomic # 8 Polarization: -137.76 SS G_CDS: -5.78 Total: -143.53 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 151.34 SS G_CDS: -0.28 Total: 151.06 kcal Total: -83.10 -0.33 -83.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.514 kcal (2) G-P(sol) polarization free energy of solvation -83.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds