Wall clock time and date at job start Wed Apr 1 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47450 * 2 1 4 4 C 1.42902 * 113.99736 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46397 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.58076 * 55.27900 * 5 4 3 7 7 C 1.53382 * 109.57654 * 175.68262 * 5 4 3 8 8 N 1.47040 * 109.17135 * 165.19825 * 7 5 4 9 9 S 1.65597 * 120.81421 * 115.73910 * 8 7 5 10 10 O 1.42100 * 106.40260 * 23.26320 * 9 8 7 11 11 O 1.42100 * 106.40277 * 156.17925 * 9 8 7 12 12 C 1.76194 * 107.22072 * 269.72156 * 9 8 7 13 13 H 1.07996 * 120.00038 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99887 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00122 * 359.97438 * 14 12 9 16 16 Si 1.86808 * 119.99878 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47217 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47348 * 119.99957 * 16 14 12 19 19 H 1.48504 * 109.46842 * 239.99586 * 16 14 12 20 20 C 1.47416 * 118.37338 * 295.46854 * 8 7 5 21 21 C 1.50992 * 107.24003 * 44.28962 * 20 8 7 22 22 C 1.35756 * 123.84997 * 348.73729 * 21 20 8 23 23 C 1.39399 * 107.83626 * 180.26897 * 22 21 20 24 24 N 1.31053 * 108.13011 * 359.87653 * 23 22 21 25 25 N 1.34229 * 128.15140 * 168.80884 * 21 20 8 26 26 C 1.46497 * 126.11814 * 359.72325 * 25 21 20 27 27 C 1.53001 * 109.46940 * 90.00237 * 26 25 21 28 28 H 1.09002 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47054 * 300.00096 * 1 2 3 30 30 H 1.08997 * 109.46875 * 59.99852 * 1 2 3 31 31 H 1.08997 * 109.47054 * 239.99904 * 2 1 3 32 32 H 1.09000 * 109.47333 * 120.00389 * 2 1 3 33 33 H 1.09001 * 109.47065 * 60.00421 * 4 3 2 34 34 H 1.09000 * 109.47155 * 300.00016 * 4 3 2 35 35 H 1.08999 * 109.52295 * 45.29140 * 7 5 4 36 36 H 1.08997 * 109.52221 * 285.09925 * 7 5 4 37 37 H 0.97001 * 119.99816 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.89932 * 163.71809 * 20 8 7 39 39 H 1.08992 * 109.90156 * 284.77462 * 20 8 7 40 40 H 1.07995 * 125.93462 * 179.83887 * 23 22 21 41 41 H 1.09002 * 109.46936 * 209.99732 * 26 25 21 42 42 H 1.08997 * 109.46917 * 330.00349 * 26 25 21 43 43 H 1.09000 * 109.46801 * 180.02562 * 27 26 25 44 44 H 1.08996 * 109.47496 * 299.99817 * 27 26 25 45 45 H 1.09006 * 109.47288 * 60.00127 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.8254 2.9382 -0.0001 6 1 3.3541 3.4425 0.8435 7 6 5.3502 3.0633 0.1093 8 7 5.7490 4.4336 -0.2448 9 16 6.4540 5.4282 0.8759 10 8 7.0335 4.5797 1.8574 11 8 7.1989 6.3923 0.1445 12 6 5.1574 6.3080 1.6816 13 1 4.1297 6.1339 1.3988 14 6 5.4547 7.2187 2.6732 15 7 6.7061 7.4303 3.0180 16 14 4.0799 8.1509 3.5280 17 1 2.7722 7.7339 2.9612 18 1 4.1079 7.8510 4.9821 19 1 4.2668 9.6093 3.3198 20 6 5.5112 4.8983 -1.6234 21 6 4.1204 4.4564 -2.0110 22 6 3.3763 3.5807 -1.2883 23 6 2.1607 3.4070 -1.9482 24 7 2.1718 4.1523 -3.0262 25 7 3.4017 4.8254 -3.0830 26 6 3.8256 5.7631 -4.1257 27 6 4.5365 4.9964 -5.2427 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9763 -0.8892 34 1 3.8333 0.9765 0.8908 35 1 5.8235 2.3582 -0.5740 36 1 5.6611 2.8462 1.1312 37 1 6.9152 8.0707 3.7159 38 1 5.5805 5.9852 -1.6657 39 1 6.2442 4.4535 -2.2964 40 1 1.3509 2.7687 -1.6273 41 1 2.9522 6.2722 -4.5333 42 1 4.5078 6.4978 -3.6981 43 1 4.8522 5.6942 -6.0183 44 1 5.4098 4.4873 -4.8352 45 1 3.8542 4.2617 -5.6703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:44 Heat of formation + Delta-G solvation = -59.677377 kcal Electronic energy + Delta-G solvation = -29544.053236 eV Core-core repulsion = 25496.852465 eV Total energy + Delta-G solvation = -4047.200771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.25321 -38.15960 -36.57970 -35.39563 -34.54451 -34.04856 -33.11555 -32.57016 -30.72178 -30.13649 -28.77359 -26.14066 -25.88653 -24.15251 -23.54122 -22.77058 -21.85778 -20.11771 -19.23581 -18.25195 -17.43436 -16.69078 -16.62890 -16.11127 -15.90567 -15.36224 -15.02443 -14.92652 -14.73600 -14.43214 -14.09615 -13.93567 -13.57804 -13.31342 -13.13100 -12.75605 -12.67968 -12.47580 -12.24761 -12.19948 -12.06211 -11.86163 -11.54319 -11.46886 -11.36085 -11.23698 -11.17218 -10.88973 -10.86435 -10.58233 -10.42466 -10.35958 -10.26579 -10.08795 -9.50701 -9.26867 -9.07050 -8.95268 -8.38439 -7.90745 -6.71756 -5.33311 2.09218 2.14878 2.71166 3.05494 3.12289 3.14195 3.23147 3.70863 4.04827 4.37590 4.61293 4.63357 4.80613 4.95025 4.96611 5.06435 5.08063 5.16271 5.22268 5.27125 5.34528 5.43693 5.49282 5.52554 5.59980 5.61577 5.62237 5.70717 5.74783 5.79638 5.82952 5.92640 5.97140 6.02221 6.14744 6.16398 6.26545 6.35202 6.52568 6.76064 7.02306 7.26190 7.28608 7.32298 7.42040 7.99618 8.02766 8.88784 10.21892 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009164 B = 0.004778 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.763699 B = 5859.291106 C = 7167.724687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.383 6.383 4 C 0.076 3.924 5 C -0.026 4.026 6 H 0.093 0.907 7 C 0.132 3.868 8 N -1.004 6.004 9 S 2.714 3.286 10 O -0.998 6.998 11 O -1.002 7.002 12 C -1.016 5.016 13 H 0.104 0.896 14 C 0.135 3.865 15 N -0.847 5.847 16 Si 0.918 3.082 17 H -0.261 1.261 18 H -0.270 1.270 19 H -0.271 1.271 20 C 0.195 3.805 21 C 0.077 3.923 22 C -0.219 4.219 23 C 0.068 3.932 24 N -0.312 5.312 25 N -0.365 5.365 26 C 0.126 3.874 27 C -0.168 4.168 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.290 0.710 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.186 0.814 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 -10.539 -10.589 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.302 6.302 4 C -0.001 4.001 5 C -0.048 4.048 6 H 0.112 0.888 7 C 0.006 3.994 8 N -0.837 5.837 9 S 2.816 3.184 10 O -0.988 6.988 11 O -0.992 6.992 12 C -1.150 5.150 13 H 0.122 0.878 14 C -0.083 4.083 15 N -0.476 5.476 16 Si 0.741 3.259 17 H -0.185 1.185 18 H -0.195 1.195 19 H -0.196 1.196 20 C 0.067 3.933 21 C -0.053 4.053 22 C -0.230 4.230 23 C -0.116 4.116 24 N -0.133 5.133 25 N -0.147 5.147 26 C 0.004 3.996 27 C -0.226 4.226 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.203 0.797 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.295 -9.767 -11.502 16.761 hybrid contribution -0.843 0.197 1.215 1.492 sum -8.138 -9.570 -10.287 16.237 Atomic orbital electron populations 1.21741 0.94045 1.01912 1.03172 1.22411 0.95351 0.84415 0.99841 1.87890 1.21406 1.25643 1.95288 1.22436 0.80989 0.96591 1.00075 1.20021 0.96182 0.93106 0.95451 0.88845 1.21189 0.92333 0.83487 1.02431 1.58366 1.79220 1.24582 1.21530 1.00618 0.74523 0.71938 0.71361 1.93360 1.77830 1.68884 1.58743 1.93359 1.71686 1.60613 1.73534 1.30612 1.12115 1.38390 1.33890 0.87761 1.24730 0.96595 0.93488 0.93501 1.69897 1.18215 1.31677 1.27856 0.86169 0.81398 0.79130 0.79162 1.18514 1.19519 1.19637 1.19750 0.88819 1.00441 0.84297 1.21246 0.96167 0.98257 0.89617 1.19549 0.95913 1.06663 1.00897 1.23737 0.97982 0.97882 0.92019 1.77451 1.00578 1.12954 1.22342 1.48241 1.11930 1.35600 1.18925 1.21669 1.00494 0.90123 0.87299 1.22174 1.01039 1.01298 0.98127 0.91480 0.91799 0.91917 0.93718 0.93556 0.93268 0.92771 0.91664 0.87960 0.89922 0.87913 0.90206 0.79740 0.88857 0.88696 0.90622 0.91921 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.55 6.66 37.16 0.25 0.80 16 3 O -0.38 -4.89 8.12 -35.23 -0.29 -5.18 16 4 C 0.08 0.96 5.18 37.16 0.19 1.16 16 5 C -0.03 -0.42 2.98 -91.53 -0.27 -0.69 16 6 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 7 C 0.13 2.21 5.74 -3.55 -0.02 2.19 16 8 N -1.00 -19.85 3.26 -114.18 -0.37 -20.22 16 9 S 2.71 69.96 4.99 -107.50 -0.54 69.43 16 10 O -1.00 -27.98 16.63 -57.17 -0.95 -28.93 16 11 O -1.00 -28.03 16.93 -57.17 -0.97 -29.00 16 12 C -1.02 -27.67 9.75 30.60 0.30 -27.37 16 13 H 0.10 2.70 7.81 -52.49 -0.41 2.29 16 14 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 15 N -0.85 -24.52 13.19 55.43 0.73 -23.79 16 16 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 C 0.20 3.33 6.21 -4.55 -0.03 3.30 16 21 C 0.08 1.28 6.82 -82.29 -0.56 0.72 16 22 C -0.22 -3.64 5.48 -105.03 -0.58 -4.22 16 23 C 0.07 1.10 11.09 -17.45 -0.19 0.90 16 24 N -0.31 -5.17 12.59 30.56 0.38 -4.78 16 25 N -0.36 -5.60 3.60 -57.10 -0.21 -5.81 16 26 C 0.13 1.43 7.01 -4.04 -0.03 1.40 16 27 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.10 1.77 6.95 -51.93 -0.36 1.41 16 37 H 0.29 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.10 1.79 7.30 -51.93 -0.38 1.41 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.19 2.67 6.60 -52.49 -0.35 2.32 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.09 0.99 7.77 -51.93 -0.40 0.58 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -35.48 381.73 -8.70 -44.17 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.95 Total: 2.97 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -0.28 Total: -20.28 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.54 Total: -54.60 kcal Atomic # 8 Polarization: -60.91 SS G_CDS: -2.20 Total: -63.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 69.96 SS G_CDS: -0.54 Total: 69.43 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.48 -8.70 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.504 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds