Wall clock time and date at job start Wed Apr 1 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47450 * 2 1 4 4 C 1.42902 * 113.99736 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46397 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.58076 * 55.27900 * 5 4 3 7 7 C 1.53382 * 109.57654 * 175.68262 * 5 4 3 8 8 N 1.47040 * 109.17135 * 165.19825 * 7 5 4 9 9 S 1.65597 * 120.81421 * 115.73910 * 8 7 5 10 10 O 1.42100 * 106.40260 * 23.26320 * 9 8 7 11 11 O 1.42100 * 106.40277 * 156.17925 * 9 8 7 12 12 C 1.76194 * 107.22072 * 269.72156 * 9 8 7 13 13 H 1.07996 * 120.00038 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99887 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00122 * 359.97438 * 14 12 9 16 16 Si 1.86808 * 119.99878 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47217 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47348 * 119.99957 * 16 14 12 19 19 H 1.48504 * 109.46842 * 239.99586 * 16 14 12 20 20 C 1.47416 * 118.37338 * 295.46854 * 8 7 5 21 21 C 1.50992 * 107.24003 * 44.28962 * 20 8 7 22 22 C 1.35756 * 123.84997 * 348.73729 * 21 20 8 23 23 C 1.39399 * 107.83626 * 180.26897 * 22 21 20 24 24 N 1.31053 * 108.13011 * 359.87653 * 23 22 21 25 25 N 1.34229 * 128.15140 * 168.80884 * 21 20 8 26 26 C 1.46497 * 126.11814 * 359.72325 * 25 21 20 27 27 C 1.53001 * 109.46940 * 90.00237 * 26 25 21 28 28 H 1.09002 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47054 * 300.00096 * 1 2 3 30 30 H 1.08997 * 109.46875 * 59.99852 * 1 2 3 31 31 H 1.08997 * 109.47054 * 239.99904 * 2 1 3 32 32 H 1.09000 * 109.47333 * 120.00389 * 2 1 3 33 33 H 1.09001 * 109.47065 * 60.00421 * 4 3 2 34 34 H 1.09000 * 109.47155 * 300.00016 * 4 3 2 35 35 H 1.08999 * 109.52295 * 45.29140 * 7 5 4 36 36 H 1.08997 * 109.52221 * 285.09925 * 7 5 4 37 37 H 0.97001 * 119.99816 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.89932 * 163.71809 * 20 8 7 39 39 H 1.08992 * 109.90156 * 284.77462 * 20 8 7 40 40 H 1.07995 * 125.93462 * 179.83887 * 23 22 21 41 41 H 1.09002 * 109.46936 * 209.99732 * 26 25 21 42 42 H 1.08997 * 109.46917 * 330.00349 * 26 25 21 43 43 H 1.09000 * 109.46801 * 180.02562 * 27 26 25 44 44 H 1.08996 * 109.47496 * 299.99817 * 27 26 25 45 45 H 1.09006 * 109.47288 * 60.00127 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.8254 2.9382 -0.0001 6 1 3.3541 3.4425 0.8435 7 6 5.3502 3.0633 0.1093 8 7 5.7490 4.4336 -0.2448 9 16 6.4540 5.4282 0.8759 10 8 7.0335 4.5797 1.8574 11 8 7.1989 6.3923 0.1445 12 6 5.1574 6.3080 1.6816 13 1 4.1297 6.1339 1.3988 14 6 5.4547 7.2187 2.6732 15 7 6.7061 7.4303 3.0180 16 14 4.0799 8.1509 3.5280 17 1 2.7722 7.7339 2.9612 18 1 4.1079 7.8510 4.9821 19 1 4.2668 9.6093 3.3198 20 6 5.5112 4.8983 -1.6234 21 6 4.1204 4.4564 -2.0110 22 6 3.3763 3.5807 -1.2883 23 6 2.1607 3.4070 -1.9482 24 7 2.1718 4.1523 -3.0262 25 7 3.4017 4.8254 -3.0830 26 6 3.8256 5.7631 -4.1257 27 6 4.5365 4.9964 -5.2427 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9763 -0.8892 34 1 3.8333 0.9765 0.8908 35 1 5.8235 2.3582 -0.5740 36 1 5.6611 2.8462 1.1312 37 1 6.9152 8.0707 3.7159 38 1 5.5805 5.9852 -1.6657 39 1 6.2442 4.4535 -2.2964 40 1 1.3509 2.7687 -1.6273 41 1 2.9522 6.2722 -4.5333 42 1 4.5078 6.4978 -3.6981 43 1 4.8522 5.6942 -6.0183 44 1 5.4098 4.4873 -4.8352 45 1 3.8542 4.2617 -5.6703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:43 Heat of formation + Delta-G solvation = -85.481030 kcal Electronic energy + Delta-G solvation = -29545.172166 eV Core-core repulsion = 25496.852465 eV Total energy + Delta-G solvation = -4048.319702 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.48161 -39.15060 -37.88518 -37.50250 -36.18218 -35.61517 -35.18370 -33.65021 -31.63371 -31.39375 -29.88106 -28.26080 -27.06340 -25.46081 -24.56192 -23.52156 -23.07708 -21.32487 -20.92338 -19.85736 -19.05257 -18.43327 -17.69220 -17.54137 -17.02456 -16.89782 -16.51069 -16.40510 -15.90634 -15.72621 -15.48679 -15.25000 -14.80648 -14.71248 -14.38800 -14.03126 -13.79247 -13.69372 -13.50403 -13.45416 -13.18346 -13.09080 -13.05121 -12.97120 -12.65456 -12.59931 -12.53931 -12.34427 -12.28295 -12.21718 -12.05968 -11.84312 -11.76315 -11.41015 -11.27683 -11.01338 -10.38811 -10.25620 -9.95473 -9.15512 -8.76642 -7.48640 0.19758 0.88993 1.29116 1.31122 1.48053 1.59472 1.87453 2.17729 2.55516 2.62456 2.89920 3.47924 3.59486 3.74014 3.91597 4.01040 4.11502 4.14109 4.15929 4.24542 4.27116 4.32460 4.37576 4.43367 4.51516 4.55393 4.57664 4.63403 4.66824 4.72418 4.81767 4.83943 4.94739 4.97629 5.07436 5.13796 5.21372 5.25001 5.27013 5.35999 5.42238 5.74051 5.81662 5.90392 6.13424 6.42299 6.78327 6.79426 8.18975 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009164 B = 0.004778 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.763699 B = 5859.291106 C = 7167.724687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.402 6.402 4 C 0.083 3.917 5 C -0.023 4.023 6 H 0.068 0.932 7 C 0.126 3.874 8 N -1.001 6.001 9 S 2.726 3.274 10 O -1.029 7.029 11 O -1.032 7.032 12 C -1.038 5.038 13 H 0.108 0.892 14 C 0.078 3.922 15 N -0.890 5.890 16 Si 0.980 3.020 17 H -0.257 1.257 18 H -0.255 1.255 19 H -0.257 1.257 20 C 0.192 3.808 21 C 0.067 3.933 22 C -0.231 4.231 23 C 0.067 3.933 24 N -0.326 5.326 25 N -0.361 5.361 26 C 0.112 3.888 27 C -0.159 4.159 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.300 0.700 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.196 0.804 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.058 0.942 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 -11.252 -11.576 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.322 6.322 4 C 0.006 3.994 5 C -0.045 4.045 6 H 0.087 0.913 7 C 0.001 3.999 8 N -0.838 5.838 9 S 2.828 3.172 10 O -1.020 7.020 11 O -1.022 7.022 12 C -1.171 5.171 13 H 0.127 0.873 14 C -0.136 4.136 15 N -0.521 5.521 16 Si 0.799 3.201 17 H -0.181 1.181 18 H -0.179 1.179 19 H -0.181 1.181 20 C 0.065 3.935 21 C -0.064 4.064 22 C -0.243 4.243 23 C -0.117 4.117 24 N -0.148 5.148 25 N -0.144 5.144 26 C -0.008 4.008 27 C -0.217 4.217 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.213 0.787 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.580 -10.483 -12.504 18.435 hybrid contribution -0.466 0.370 1.425 1.544 sum -9.047 -10.114 -11.079 17.518 Atomic orbital electron populations 1.21758 0.93249 1.03141 1.02522 1.22620 0.96021 0.83122 1.00806 1.87855 1.21213 1.27670 1.95473 1.22320 0.81419 0.94299 1.01370 1.19924 0.95075 0.95203 0.94252 0.91337 1.21444 0.93492 0.82253 1.02748 1.57824 1.79109 1.25068 1.21760 0.99911 0.74341 0.71647 0.71325 1.93307 1.78735 1.69413 1.60495 1.93306 1.72750 1.62107 1.74037 1.30964 1.12746 1.38923 1.34469 0.87346 1.25843 0.99170 0.94371 0.94167 1.69962 1.20325 1.32870 1.28967 0.85239 0.77962 0.78287 0.78596 1.18058 1.17948 1.18095 1.19940 0.90173 1.00281 0.83099 1.21192 0.96106 0.98660 0.90453 1.19742 0.96329 1.07044 1.01198 1.23887 0.98086 0.97952 0.91775 1.77409 1.01232 1.13393 1.22720 1.48565 1.11230 1.35430 1.19151 1.22068 1.01422 0.90097 0.87193 1.22117 1.00310 1.01427 0.97860 0.89325 0.92648 0.92345 0.92581 0.92686 0.91868 0.91475 0.88347 0.89026 0.89013 0.88764 0.87134 0.78691 0.87822 0.87838 0.87935 0.92280 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.05 0.88 6.66 71.98 0.48 1.36 16 3 O -0.40 -9.72 8.12 -148.98 -1.21 -10.93 16 4 C 0.08 1.97 5.18 71.98 0.37 2.35 16 5 C -0.02 -0.72 2.98 -11.38 -0.03 -0.76 16 6 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 7 C 0.13 4.14 5.74 86.40 0.50 4.63 16 8 N -1.00 -39.51 3.26 -515.17 -1.68 -41.19 16 9 S 2.73 143.36 4.99 -56.49 -0.28 143.08 16 10 O -1.03 -59.23 16.63 -128.00 -2.13 -61.36 16 11 O -1.03 -59.02 16.93 -128.00 -2.17 -61.19 16 12 C -1.04 -57.43 9.75 67.73 0.66 -56.77 16 13 H 0.11 5.70 7.81 -2.91 -0.02 5.68 16 14 C 0.08 4.33 5.46 84.65 0.46 4.79 16 15 N -0.89 -52.37 13.19 21.45 0.28 -52.09 16 16 Si 0.98 42.03 29.54 68.60 2.03 44.06 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 C 0.19 6.41 6.21 85.55 0.53 6.94 16 21 C 0.07 2.15 6.82 41.71 0.28 2.44 16 22 C -0.23 -7.51 5.48 -20.13 -0.11 -7.62 16 23 C 0.07 2.08 11.09 85.09 0.94 3.02 16 24 N -0.33 -10.39 12.59 -57.22 -0.72 -11.11 16 25 N -0.36 -10.64 3.60 -334.56 -1.20 -11.84 16 26 C 0.11 2.37 7.01 86.38 0.61 2.97 16 27 C -0.16 -2.63 10.24 71.98 0.74 -1.90 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 2.58 8.07 -2.39 -0.02 2.56 16 36 H 0.09 3.20 6.95 -2.39 -0.02 3.18 16 37 H 0.30 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.09 3.29 7.30 -2.39 -0.02 3.27 16 39 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.20 5.44 6.60 -2.91 -0.02 5.42 16 41 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 42 H 0.10 2.00 7.77 -2.39 -0.02 1.98 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 45 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -77.23 381.73 0.07 -77.16 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.98 Total: 25.48 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 6.17 Total: -40.07 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -3.32 Total: -116.24 kcal Atomic # 8 Polarization: -127.97 SS G_CDS: -5.50 Total: -133.48 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 143.36 SS G_CDS: -0.28 Total: 143.08 kcal Total: -77.23 0.07 -77.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.318 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds