Wall clock time and date at job start Wed Apr 1 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47142 * 2 1 4 4 C 1.42901 * 114.00064 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46775 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.58109 * 305.26791 * 5 4 3 7 7 C 1.53385 * 109.57923 * 184.99786 * 5 4 3 8 8 N 1.47039 * 109.16254 * 194.81395 * 7 5 4 9 9 S 1.65602 * 120.81673 * 244.54376 * 8 7 5 10 10 O 1.42106 * 106.40189 * 23.56444 * 9 8 7 11 11 O 1.42099 * 106.40140 * 156.48580 * 9 8 7 12 12 C 1.76201 * 107.21837 * 270.02555 * 9 8 7 13 13 H 1.08002 * 119.99839 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00011 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00237 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00111 * 179.97438 * 14 12 9 17 17 H 1.48510 * 109.47168 * 59.99840 * 16 14 12 18 18 H 1.48499 * 109.47452 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47311 * 300.00169 * 16 14 12 20 20 C 1.47410 * 118.36614 * 64.56893 * 8 7 5 21 21 C 1.50994 * 107.30855 * 315.68705 * 20 8 7 22 22 C 1.35923 * 123.73104 * 11.19648 * 21 20 8 23 23 C 1.39393 * 107.78756 * 179.68911 * 22 21 20 24 24 N 1.31042 * 108.13461 * 0.10314 * 23 22 21 25 25 N 1.34077 * 128.28236 * 191.03358 * 21 20 8 26 26 C 1.46500 * 126.06091 * 0.38808 * 25 21 20 27 27 C 1.52998 * 109.47251 * 269.94402 * 26 25 21 28 28 H 1.08995 * 109.47310 * 299.99945 * 1 2 3 29 29 H 1.08998 * 109.46992 * 60.00834 * 1 2 3 30 30 H 1.09003 * 109.46888 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47031 * 239.99695 * 2 1 3 32 32 H 1.09008 * 109.47001 * 119.99716 * 2 1 3 33 33 H 1.08995 * 109.46797 * 59.99946 * 4 3 2 34 34 H 1.09000 * 109.47117 * 299.99602 * 4 3 2 35 35 H 1.09005 * 109.51971 * 74.90667 * 7 5 4 36 36 H 1.08999 * 109.52279 * 314.72159 * 7 5 4 37 37 H 0.96996 * 120.00635 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.90275 * 75.16004 * 20 8 7 39 39 H 1.09001 * 109.89808 * 196.21622 * 20 8 7 40 40 H 1.08006 * 125.92648 * 180.14229 * 23 22 21 41 41 H 1.09003 * 109.47250 * 29.94822 * 26 25 21 42 42 H 1.09003 * 109.47175 * 149.94546 * 26 25 21 43 43 H 1.08996 * 109.47347 * 300.00762 * 27 26 25 44 44 H 1.09003 * 109.46913 * 59.99984 * 27 26 25 45 45 H 1.08993 * 109.47257 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 1 3.3463 3.4440 -0.8396 7 6 5.3488 3.0639 -0.1277 8 7 5.7512 4.4334 0.2251 9 16 6.4369 5.4333 -0.9029 10 8 6.0189 4.9519 -2.1729 11 8 6.1992 6.7620 -0.4587 12 6 8.1801 5.1877 -0.8268 13 1 8.5955 4.4804 -0.1242 14 6 9.0135 5.8976 -1.6648 15 7 8.5075 6.7577 -2.5214 16 14 10.8616 5.6377 -1.5836 17 1 11.1755 4.2176 -1.8841 18 1 11.5289 6.5132 -2.5803 19 1 11.3496 5.9751 -0.2223 20 6 5.5298 4.8943 1.6077 21 6 4.1439 4.4520 2.0121 22 6 3.3908 3.5779 1.2935 23 6 2.1839 3.4011 1.9681 24 7 2.2085 4.1413 3.0491 25 7 3.4388 4.8144 3.0934 26 6 3.8754 5.7481 4.1345 27 6 4.6006 4.9773 5.2394 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 3.8332 0.9767 -0.8908 34 1 3.8341 0.9765 0.8892 35 1 5.6480 2.8491 -1.1537 36 1 5.8299 2.3572 0.5485 37 1 9.0938 7.2568 -3.1112 38 1 6.2703 4.4471 2.2709 39 1 5.6003 5.9811 1.6523 40 1 1.3701 2.7640 1.6545 41 1 4.5518 6.4849 3.7013 42 1 3.0070 6.2552 4.5551 43 1 3.9242 4.2405 5.6725 44 1 5.4690 4.4702 4.8187 45 1 4.9258 5.6721 6.0137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:48 Heat of formation + Delta-G solvation = -60.104523 kcal Electronic energy + Delta-G solvation = -29298.751789 eV Core-core repulsion = 25251.532495 eV Total energy + Delta-G solvation = -4047.219294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28655 -38.17705 -36.58358 -35.38870 -34.56133 -34.03116 -33.13670 -32.59179 -30.73565 -30.16636 -28.79247 -26.17978 -25.89235 -24.16095 -23.55433 -22.78505 -21.88606 -20.13421 -19.05273 -18.64507 -17.28536 -16.72944 -16.61937 -16.12047 -15.91898 -15.34418 -15.08271 -14.87849 -14.74404 -14.47722 -14.11256 -13.95215 -13.59502 -13.34749 -13.17098 -12.76226 -12.69636 -12.49602 -12.25939 -12.20070 -12.04051 -11.88975 -11.54250 -11.48482 -11.37302 -11.24051 -11.22357 -10.93182 -10.88660 -10.66163 -10.37398 -10.35811 -10.27188 -10.10518 -9.52392 -9.28826 -9.11945 -8.94674 -8.39677 -7.93720 -6.74844 -5.38507 2.06744 2.12556 2.69168 3.04867 3.08345 3.09872 3.14775 3.69822 4.00430 4.36675 4.58287 4.61345 4.79957 4.93948 4.95319 5.04965 5.06388 5.15242 5.20528 5.25848 5.33364 5.42305 5.49038 5.51998 5.59682 5.62293 5.62575 5.70065 5.74473 5.80455 5.82650 5.91481 5.95840 6.00501 6.13413 6.15402 6.24632 6.34899 6.49589 6.74335 6.99046 7.23379 7.26883 7.27718 7.42134 7.90867 7.99774 8.83260 10.18940 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004034 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.026302 B = 6939.683334 C = 8571.065319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.384 6.384 4 C 0.077 3.923 5 C -0.024 4.024 6 H 0.089 0.911 7 C 0.134 3.866 8 N -1.004 6.004 9 S 2.715 3.285 10 O -0.996 6.996 11 O -1.002 7.002 12 C -1.021 5.021 13 H 0.103 0.897 14 C 0.133 3.867 15 N -0.844 5.844 16 Si 0.921 3.079 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.264 1.264 20 C 0.188 3.812 21 C 0.079 3.921 22 C -0.224 4.224 23 C 0.069 3.931 24 N -0.313 5.313 25 N -0.363 5.363 26 C 0.125 3.875 27 C -0.168 4.168 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.292 0.708 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.186 0.814 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 -10.302 10.508 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.303 6.303 4 C 0.000 4.000 5 C -0.045 4.045 6 H 0.108 0.892 7 C 0.007 3.993 8 N -0.838 5.838 9 S 2.816 3.184 10 O -0.987 6.987 11 O -0.992 6.992 12 C -1.155 5.155 13 H 0.121 0.879 14 C -0.085 4.085 15 N -0.474 5.474 16 Si 0.745 3.255 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.188 1.188 20 C 0.060 3.940 21 C -0.051 4.051 22 C -0.236 4.236 23 C -0.116 4.116 24 N -0.134 5.134 25 N -0.145 5.145 26 C 0.004 3.996 27 C -0.227 4.227 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.203 0.797 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.250 -8.937 10.957 16.896 hybrid contribution 2.014 -0.881 -0.391 2.232 sum -7.236 -9.817 10.566 16.137 Atomic orbital electron populations 1.21742 0.94033 1.01932 1.03149 1.22418 0.95350 0.84382 0.99881 1.87881 1.21421 1.25701 1.95302 1.22427 0.80970 0.96493 1.00152 1.19980 0.96297 0.93221 0.95050 0.89246 1.21159 0.92293 0.83617 1.02211 1.58333 1.77929 1.25576 1.21921 1.00613 0.75704 0.71268 0.70803 1.93364 1.84596 1.81066 1.39645 1.93345 1.87775 1.36354 1.81734 1.30565 1.17301 1.35882 1.31706 0.87854 1.24754 1.01884 0.90800 0.91091 1.69882 1.38800 1.20705 1.18007 0.86194 0.81033 0.79318 0.78984 1.18784 1.20078 1.18833 1.19819 0.89044 1.00917 0.84218 1.21260 0.96277 0.98190 0.89386 1.19622 0.96097 1.06905 1.00952 1.23732 0.98065 0.97900 0.91886 1.77455 1.00417 1.13103 1.22408 1.48211 1.12227 1.35671 1.18403 1.21686 1.00312 0.90205 0.87430 1.22172 1.00985 1.01284 0.98214 0.91919 0.91811 0.91462 0.93531 0.93685 0.92733 0.93173 0.88152 0.91614 0.89725 0.90068 0.87401 0.79712 0.88638 0.88841 0.91850 0.91858 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.38 -4.85 8.17 -35.23 -0.29 -5.14 16 4 C 0.08 0.97 5.17 37.16 0.19 1.16 16 5 C -0.02 -0.38 2.97 -91.52 -0.27 -0.66 16 6 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 7 C 0.13 2.25 5.67 -3.55 -0.02 2.23 16 8 N -1.00 -19.93 3.26 -114.18 -0.37 -20.30 16 9 S 2.71 70.18 5.01 -107.50 -0.54 69.64 16 10 O -1.00 -28.23 16.72 -57.17 -0.96 -29.19 16 11 O -1.00 -28.40 16.64 -57.17 -0.95 -29.35 16 12 C -1.02 -27.10 9.75 30.60 0.30 -26.80 16 13 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 14 C 0.13 3.61 5.46 -17.82 -0.10 3.51 16 15 N -0.84 -24.30 13.19 55.43 0.73 -23.57 16 16 Si 0.92 19.93 29.54 -169.99 -5.02 14.91 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 C 0.19 3.22 6.44 -4.55 -0.03 3.19 16 21 C 0.08 1.32 6.83 -82.30 -0.56 0.76 16 22 C -0.22 -3.72 5.49 -104.97 -0.58 -4.30 16 23 C 0.07 1.09 11.10 -17.46 -0.19 0.89 16 24 N -0.31 -5.12 12.59 30.56 0.38 -4.74 16 25 N -0.36 -5.56 3.60 -57.09 -0.21 -5.76 16 26 C 0.13 1.42 7.01 -4.04 -0.03 1.39 16 27 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.74 7.10 -51.93 -0.37 1.37 16 36 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.11 1.91 6.81 -51.93 -0.35 1.55 16 40 H 0.19 2.62 6.63 -52.48 -0.35 2.27 16 41 H 0.10 0.99 7.77 -51.93 -0.40 0.59 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -35.40 381.45 -8.68 -44.08 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.93 Total: 3.58 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -0.28 Total: -19.90 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.54 Total: -54.37 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -2.20 Total: -63.68 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 70.18 SS G_CDS: -0.54 Total: 69.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.40 -8.68 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.026 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds