Wall clock time and date at job start Wed Apr 1 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47142 * 2 1 4 4 C 1.42901 * 114.00064 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46775 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.58109 * 305.26791 * 5 4 3 7 7 C 1.53385 * 109.57923 * 184.99786 * 5 4 3 8 8 N 1.47039 * 109.16254 * 194.81395 * 7 5 4 9 9 S 1.65602 * 120.81673 * 244.54376 * 8 7 5 10 10 O 1.42106 * 106.40189 * 23.56444 * 9 8 7 11 11 O 1.42099 * 106.40140 * 156.48580 * 9 8 7 12 12 C 1.76201 * 107.21837 * 270.02555 * 9 8 7 13 13 H 1.08002 * 119.99839 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00011 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00237 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00111 * 179.97438 * 14 12 9 17 17 H 1.48510 * 109.47168 * 59.99840 * 16 14 12 18 18 H 1.48499 * 109.47452 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47311 * 300.00169 * 16 14 12 20 20 C 1.47410 * 118.36614 * 64.56893 * 8 7 5 21 21 C 1.50994 * 107.30855 * 315.68705 * 20 8 7 22 22 C 1.35923 * 123.73104 * 11.19648 * 21 20 8 23 23 C 1.39393 * 107.78756 * 179.68911 * 22 21 20 24 24 N 1.31042 * 108.13461 * 0.10314 * 23 22 21 25 25 N 1.34077 * 128.28236 * 191.03358 * 21 20 8 26 26 C 1.46500 * 126.06091 * 0.38808 * 25 21 20 27 27 C 1.52998 * 109.47251 * 269.94402 * 26 25 21 28 28 H 1.08995 * 109.47310 * 299.99945 * 1 2 3 29 29 H 1.08998 * 109.46992 * 60.00834 * 1 2 3 30 30 H 1.09003 * 109.46888 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47031 * 239.99695 * 2 1 3 32 32 H 1.09008 * 109.47001 * 119.99716 * 2 1 3 33 33 H 1.08995 * 109.46797 * 59.99946 * 4 3 2 34 34 H 1.09000 * 109.47117 * 299.99602 * 4 3 2 35 35 H 1.09005 * 109.51971 * 74.90667 * 7 5 4 36 36 H 1.08999 * 109.52279 * 314.72159 * 7 5 4 37 37 H 0.96996 * 120.00635 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.90275 * 75.16004 * 20 8 7 39 39 H 1.09001 * 109.89808 * 196.21622 * 20 8 7 40 40 H 1.08006 * 125.92648 * 180.14229 * 23 22 21 41 41 H 1.09003 * 109.47250 * 29.94822 * 26 25 21 42 42 H 1.09003 * 109.47175 * 149.94546 * 26 25 21 43 43 H 1.08996 * 109.47347 * 300.00762 * 27 26 25 44 44 H 1.09003 * 109.46913 * 59.99984 * 27 26 25 45 45 H 1.08993 * 109.47257 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 1 3.3463 3.4440 -0.8396 7 6 5.3488 3.0639 -0.1277 8 7 5.7512 4.4334 0.2251 9 16 6.4369 5.4333 -0.9029 10 8 6.0189 4.9519 -2.1729 11 8 6.1992 6.7620 -0.4587 12 6 8.1801 5.1877 -0.8268 13 1 8.5955 4.4804 -0.1242 14 6 9.0135 5.8976 -1.6648 15 7 8.5075 6.7577 -2.5214 16 14 10.8616 5.6377 -1.5836 17 1 11.1755 4.2176 -1.8841 18 1 11.5289 6.5132 -2.5803 19 1 11.3496 5.9751 -0.2223 20 6 5.5298 4.8943 1.6077 21 6 4.1439 4.4520 2.0121 22 6 3.3908 3.5779 1.2935 23 6 2.1839 3.4011 1.9681 24 7 2.2085 4.1413 3.0491 25 7 3.4388 4.8144 3.0934 26 6 3.8754 5.7481 4.1345 27 6 4.6006 4.9773 5.2394 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 3.8332 0.9767 -0.8908 34 1 3.8341 0.9765 0.8892 35 1 5.6480 2.8491 -1.1537 36 1 5.8299 2.3572 0.5485 37 1 9.0938 7.2568 -3.1112 38 1 6.2703 4.4471 2.2709 39 1 5.6003 5.9811 1.6523 40 1 1.3701 2.7640 1.6545 41 1 4.5518 6.4849 3.7013 42 1 3.0070 6.2552 4.5551 43 1 3.9242 4.2405 5.6725 44 1 5.4690 4.4702 4.8187 45 1 4.9258 5.6721 6.0137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:47 Heat of formation + Delta-G solvation = -86.052352 kcal Electronic energy + Delta-G solvation = -29299.876972 eV Core-core repulsion = 25251.532495 eV Total energy + Delta-G solvation = -4048.344476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.51366 -39.16747 -37.88645 -37.50080 -36.16386 -35.63091 -35.16153 -33.66645 -31.64370 -31.41830 -29.89958 -28.24817 -27.06954 -25.46440 -24.57566 -23.53147 -23.10545 -21.31400 -20.78447 -20.22726 -18.81997 -18.46162 -17.70040 -17.58447 -16.97167 -16.84678 -16.52789 -16.44431 -15.89107 -15.73235 -15.51197 -15.25564 -14.82096 -14.74569 -14.41825 -13.95697 -13.79290 -13.71676 -13.49469 -13.43947 -13.18003 -13.10708 -12.98424 -12.97595 -12.68601 -12.61182 -12.51982 -12.30876 -12.24445 -12.21904 -12.05807 -11.86636 -11.78555 -11.44300 -11.21865 -11.00012 -10.40300 -10.27712 -9.94562 -9.18726 -8.74003 -7.48829 0.18937 0.86074 1.36781 1.38836 1.51989 1.57501 1.83578 2.21703 2.59019 2.62865 2.88913 3.47027 3.57394 3.78406 3.90122 4.00540 4.10782 4.13284 4.15675 4.24722 4.26455 4.32121 4.37550 4.42496 4.51556 4.53855 4.56297 4.62642 4.65686 4.71523 4.82435 4.83365 4.93588 4.96355 5.05672 5.13142 5.21497 5.22180 5.26843 5.35241 5.40390 5.74444 5.79202 5.91449 6.10658 6.40742 6.76549 6.78644 8.21530 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004034 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.026302 B = 6939.683334 C = 8571.065319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.403 6.403 4 C 0.084 3.916 5 C -0.023 4.023 6 H 0.061 0.939 7 C 0.128 3.872 8 N -1.002 6.002 9 S 2.718 3.282 10 O -1.034 7.034 11 O -1.039 7.039 12 C -1.036 5.036 13 H 0.126 0.874 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.990 3.010 17 H -0.248 1.248 18 H -0.267 1.267 19 H -0.248 1.248 20 C 0.186 3.814 21 C 0.067 3.933 22 C -0.237 4.237 23 C 0.068 3.932 24 N -0.326 5.326 25 N -0.360 5.360 26 C 0.112 3.888 27 C -0.159 4.159 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.299 0.701 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.198 0.802 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 -12.092 12.403 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.323 6.323 4 C 0.007 3.993 5 C -0.044 4.044 6 H 0.079 0.921 7 C 0.002 3.998 8 N -0.839 5.839 9 S 2.821 3.179 10 O -1.024 7.024 11 O -1.029 7.029 12 C -1.170 5.170 13 H 0.144 0.856 14 C -0.143 4.143 15 N -0.526 5.526 16 Si 0.808 3.192 17 H -0.172 1.172 18 H -0.191 1.191 19 H -0.171 1.171 20 C 0.059 3.941 21 C -0.064 4.064 22 C -0.249 4.249 23 C -0.116 4.116 24 N -0.147 5.147 25 N -0.142 5.142 26 C -0.008 4.008 27 C -0.217 4.217 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.214 0.786 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.118 -10.727 12.868 18.616 hybrid contribution 1.528 -0.326 -0.922 1.815 sum -6.589 -11.053 11.945 17.558 Atomic orbital electron populations 1.21760 0.93204 1.03171 1.02527 1.22632 0.96053 0.83063 1.00847 1.87849 1.21195 1.27760 1.95486 1.22304 0.81439 0.94098 1.01447 1.19901 0.95305 0.95382 0.93812 0.92055 1.21419 0.93384 0.82447 1.02529 1.57777 1.77690 1.26144 1.22245 1.00103 0.76009 0.70990 0.70752 1.93304 1.85159 1.81583 1.42402 1.93285 1.88261 1.39045 1.82316 1.30907 1.17656 1.36285 1.32178 0.85620 1.26037 1.07853 0.90070 0.90293 1.69990 1.41093 1.22202 1.19359 0.85158 0.73923 0.80122 0.79977 1.17200 1.19120 1.17118 1.20003 0.90456 1.00592 0.83033 1.21229 0.96299 0.98610 0.90265 1.19811 0.96567 1.07322 1.01202 1.23889 0.98141 0.97953 0.91605 1.77412 1.01029 1.13512 1.22793 1.48539 1.11541 1.35494 1.18623 1.22086 1.01241 0.90186 0.87314 1.22116 1.00257 1.01397 0.97932 0.92310 0.92656 0.89295 0.92688 0.92506 0.91503 0.91668 0.89264 0.88087 0.89083 0.86714 0.88544 0.78582 0.87872 0.87781 0.92628 0.92187 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 2 C 0.05 0.87 6.66 71.98 0.48 1.35 16 3 O -0.40 -9.76 8.17 -148.98 -1.22 -10.98 16 4 C 0.08 2.02 5.17 71.98 0.37 2.39 16 5 C -0.02 -0.72 2.97 -11.38 -0.03 -0.75 16 6 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 7 C 0.13 4.22 5.67 86.41 0.49 4.71 16 8 N -1.00 -39.76 3.26 -515.15 -1.68 -41.45 16 9 S 2.72 144.01 5.01 -56.49 -0.28 143.72 16 10 O -1.03 -60.93 16.72 -128.00 -2.14 -63.07 16 11 O -1.04 -60.98 16.64 -128.00 -2.13 -63.11 16 12 C -1.04 -54.86 9.75 67.73 0.66 -54.20 16 13 H 0.13 5.84 7.81 -2.91 -0.02 5.82 16 14 C 0.07 3.81 5.46 84.65 0.46 4.27 16 15 N -0.90 -52.53 13.19 21.45 0.28 -52.25 16 16 Si 0.99 39.62 29.54 68.60 2.03 41.64 16 17 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 20 C 0.19 6.23 6.44 85.55 0.55 6.78 16 21 C 0.07 2.19 6.83 41.77 0.29 2.48 16 22 C -0.24 -7.76 5.49 -20.09 -0.11 -7.87 16 23 C 0.07 2.10 11.10 85.09 0.94 3.05 16 24 N -0.33 -10.37 12.59 -57.22 -0.72 -11.09 16 25 N -0.36 -10.64 3.60 -334.52 -1.20 -11.84 16 26 C 0.11 2.36 7.01 86.38 0.61 2.97 16 27 C -0.16 -2.62 10.24 71.98 0.74 -1.88 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 3.13 7.10 -2.38 -0.02 3.12 16 36 H 0.10 2.62 8.07 -2.39 -0.02 2.60 16 37 H 0.30 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.10 3.44 6.81 -2.39 -0.02 3.42 16 40 H 0.20 5.42 6.63 -2.91 -0.02 5.40 16 41 H 0.10 2.01 7.77 -2.39 -0.02 2.00 16 42 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -78.37 381.45 0.10 -78.27 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.98 Total: 28.35 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 6.18 Total: -38.20 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -3.32 Total: -116.63 kcal Atomic # 8 Polarization: -131.67 SS G_CDS: -5.49 Total: -137.16 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.64 kcal Atomic # 16 Polarization: 144.01 SS G_CDS: -0.28 Total: 143.72 kcal Total: -78.37 0.10 -78.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.781 kcal (2) G-P(sol) polarization free energy of solvation -78.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds