Wall clock time and date at job start Wed Apr 1 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42891 * 109.47029 * 2 1 4 4 C 1.42904 * 113.99569 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47069 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.59971 * 304.67207 * 5 4 3 7 7 C 1.53347 * 109.78317 * 184.30351 * 5 4 3 8 8 N 1.46947 * 109.47916 * 194.21470 * 7 5 4 9 9 S 1.65606 * 120.67720 * 246.26112 * 8 7 5 10 10 O 1.42103 * 106.40137 * 23.25819 * 9 8 7 11 11 O 1.42099 * 106.40186 * 156.18170 * 9 8 7 12 12 C 1.76203 * 107.21566 * 269.72087 * 9 8 7 13 13 H 1.07998 * 120.00094 * 0.02562 * 12 9 8 14 14 C 1.37872 * 119.99774 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00172 * 180.02562 * 14 12 9 16 16 Si 1.86801 * 120.00077 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.47283 * 89.99756 * 16 14 12 18 18 H 1.48507 * 109.47423 * 209.99843 * 16 14 12 19 19 H 1.48495 * 109.47001 * 329.99748 * 16 14 12 20 20 C 1.47436 * 118.64397 * 65.98826 * 8 7 5 21 21 C 1.51046 * 107.03567 * 314.88656 * 20 8 7 22 22 C 1.34475 * 128.45507 * 191.37746 * 21 20 8 23 23 N 1.35219 * 107.56881 * 180.08519 * 22 21 20 24 24 C 1.46497 * 126.00128 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47036 * 125.00318 * 24 23 22 26 26 N 1.40297 * 107.99288 * 359.96751 * 23 22 21 27 27 C 1.30238 * 108.17430 * 359.95635 * 26 23 22 28 28 H 1.09002 * 109.46851 * 300.00119 * 1 2 3 29 29 H 1.09004 * 109.47656 * 59.99958 * 1 2 3 30 30 H 1.09004 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46851 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.46961 * 120.00309 * 2 1 3 33 33 H 1.08991 * 109.47486 * 60.00184 * 4 3 2 34 34 H 1.09002 * 109.47247 * 299.99742 * 4 3 2 35 35 H 1.09001 * 109.48449 * 74.19938 * 7 5 4 36 36 H 1.08995 * 109.44135 * 314.20266 * 7 5 4 37 37 H 0.97010 * 120.00311 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.93925 * 74.26920 * 20 8 7 39 39 H 1.08998 * 109.93678 * 195.50374 * 20 8 7 40 40 H 1.07993 * 126.21531 * 0.06448 * 22 21 20 41 41 H 1.09005 * 109.47074 * 244.99779 * 24 23 22 42 42 H 1.08997 * 109.47608 * 4.99848 * 24 23 22 43 43 H 1.09000 * 109.47367 * 179.97438 * 25 24 23 44 44 H 1.09005 * 109.46749 * 299.99660 * 25 24 23 45 45 H 1.08997 * 109.47306 * 59.99345 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9382 0.0001 6 1 3.3550 3.4427 -0.8439 7 6 5.3495 3.0687 -0.1088 8 7 5.7493 4.4414 0.2306 9 16 6.4095 5.4371 -0.9162 10 8 5.9777 4.9403 -2.1756 11 8 6.1661 6.7676 -0.4806 12 6 8.1558 5.2077 -0.8631 13 1 8.5877 4.5107 -0.1603 14 6 8.9706 5.9174 -1.7195 15 7 10.2739 5.7459 -1.6803 16 14 8.2233 7.1225 -2.9356 17 1 8.1314 8.4655 -2.3086 18 1 9.0797 7.1990 -4.1464 19 1 6.8649 6.6609 -3.3185 20 6 5.5450 4.9161 1.6114 21 6 4.1573 4.4874 2.0260 22 6 3.4530 4.8662 3.1071 23 7 2.2637 4.2241 3.0650 24 6 1.1855 4.3431 4.0496 25 6 -0.1094 4.7469 3.3416 26 7 2.2437 3.4240 1.9127 27 6 3.3761 3.5817 1.2890 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8333 0.9766 -0.8907 34 1 3.8340 0.9763 0.8892 35 1 5.6620 2.8406 -1.1278 36 1 5.8235 2.3710 0.5815 37 1 10.8472 6.2454 -2.2826 38 1 6.2860 4.4666 2.2725 39 1 5.6245 6.0026 1.6465 40 1 3.7782 5.5573 3.8705 41 1 1.0426 3.3851 4.5496 42 1 1.4485 5.1019 4.7865 43 1 -0.9117 4.8350 4.0741 44 1 0.0335 5.7049 2.8416 45 1 -0.3724 3.9881 2.6046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192958539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:29 Heat of formation + Delta-G solvation = -42.175960 kcal Electronic energy + Delta-G solvation = -29179.391163 eV Core-core repulsion = 25132.949309 eV Total energy + Delta-G solvation = -4046.441853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.24812 -38.15308 -36.74489 -35.69343 -34.41065 -34.04112 -33.05981 -32.98329 -30.92795 -29.60475 -29.43859 -26.37210 -25.91361 -24.42386 -23.31739 -22.70504 -21.67912 -20.33793 -19.24754 -18.45823 -17.15283 -16.96048 -16.62732 -16.52244 -16.06971 -15.43562 -15.20976 -15.05164 -14.62736 -14.27423 -14.13657 -13.82518 -13.53973 -13.28948 -13.18461 -12.88156 -12.75170 -12.59413 -12.48614 -12.44383 -12.24642 -11.85042 -11.71526 -11.52520 -11.44591 -11.32815 -11.16205 -10.98192 -10.89598 -10.72085 -10.56086 -10.36292 -10.15004 -9.81002 -9.47147 -9.19483 -9.17121 -8.99494 -8.36018 -8.03442 -6.79015 -5.32637 1.97640 2.10762 2.60596 2.97168 3.08665 3.19284 3.28903 3.71454 3.96974 4.17472 4.36249 4.60361 4.77133 4.81729 4.87689 4.99878 5.01954 5.07314 5.14350 5.27220 5.32799 5.37242 5.39930 5.45747 5.48017 5.48892 5.60051 5.66136 5.75058 5.83454 5.84544 5.88351 5.96909 5.99805 6.03986 6.06861 6.19563 6.22188 6.33090 6.69755 6.88259 7.18574 7.29222 7.37619 7.50008 7.98889 8.23810 8.72163 10.33263 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003748 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.222944 B = 7468.849701 C = 8670.630223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.370 6.370 4 C 0.076 3.924 5 C -0.024 4.024 6 H 0.101 0.899 7 C 0.139 3.861 8 N -0.998 5.998 9 S 2.676 3.324 10 O -1.004 7.004 11 O -1.007 7.007 12 C -1.015 5.015 13 H 0.122 0.878 14 C 0.153 3.847 15 N -0.823 5.823 16 Si 0.799 3.201 17 H -0.246 1.246 18 H -0.255 1.255 19 H -0.219 1.219 20 C 0.201 3.799 21 C -0.241 4.241 22 C 0.054 3.946 23 N -0.389 5.389 24 C 0.138 3.862 25 C -0.165 4.165 26 N -0.259 5.259 27 C 0.092 3.908 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.280 0.720 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.172 0.828 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 -8.132 10.505 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.289 6.289 4 C -0.001 4.001 5 C -0.046 4.046 6 H 0.119 0.881 7 C 0.012 3.988 8 N -0.832 5.832 9 S 2.780 3.220 10 O -0.994 6.994 11 O -0.997 6.997 12 C -1.149 5.149 13 H 0.140 0.860 14 C -0.066 4.066 15 N -0.452 5.452 16 Si 0.619 3.381 17 H -0.170 1.170 18 H -0.179 1.179 19 H -0.141 1.141 20 C 0.074 3.926 21 C -0.254 4.254 22 C -0.090 4.090 23 N -0.173 5.173 24 C 0.017 3.983 25 C -0.223 4.223 26 N -0.079 5.079 27 C -0.077 4.077 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.190 0.810 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.749 -7.921 10.029 21.872 hybrid contribution 1.423 0.486 -0.077 1.505 sum -16.327 -7.435 9.952 20.516 Atomic orbital electron populations 1.21694 0.94109 1.01608 1.03089 1.22368 0.95398 0.84514 0.99518 1.88009 1.20384 1.25252 1.95268 1.22332 0.81961 0.95466 1.00384 1.20177 0.97127 0.93961 0.93302 0.88102 1.21084 0.91009 0.83965 1.02757 1.57719 1.78405 1.24397 1.22694 1.01441 0.76880 0.72141 0.71546 1.93454 1.84533 1.80717 1.40741 1.93390 1.87864 1.36623 1.81825 1.30539 1.15059 1.37353 1.31977 0.85960 1.24422 0.94477 0.93503 0.94187 1.69990 1.03502 1.37037 1.34720 0.87904 0.83736 0.83861 0.82622 1.16990 1.17868 1.14087 1.19704 0.90673 1.00111 0.82125 1.20394 1.00263 1.06404 0.98319 1.21859 0.87081 0.99758 1.00302 1.48791 1.13000 1.35483 1.19999 1.21526 0.85784 1.02415 0.88624 1.22052 0.95897 1.02836 1.01507 1.77227 1.20407 1.14406 0.95855 1.21901 0.91598 0.97333 0.96825 0.91950 0.91993 0.91626 0.93770 0.93960 0.92371 0.93215 0.87799 0.91026 0.90916 0.91015 0.88133 0.81034 0.90374 0.89061 0.91150 0.92124 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.64 6.66 37.16 0.25 0.89 16 3 O -0.37 -5.29 9.45 -35.23 -0.33 -5.63 16 4 C 0.08 1.03 5.27 37.16 0.20 1.23 16 5 C -0.02 -0.38 2.97 -91.49 -0.27 -0.65 16 6 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 7 C 0.14 2.34 5.61 -3.62 -0.02 2.32 16 8 N -1.00 -19.83 3.25 -114.22 -0.37 -20.20 16 9 S 2.68 66.98 4.22 -107.50 -0.45 66.52 16 10 O -1.00 -26.58 14.72 -57.17 -0.84 -27.43 16 11 O -1.01 -26.83 15.44 -57.17 -0.88 -27.72 16 12 C -1.01 -28.06 10.29 30.60 0.31 -27.75 16 13 H 0.12 3.40 8.06 -52.49 -0.42 2.97 16 14 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16 15 N -0.82 -23.64 13.96 55.43 0.77 -22.87 16 16 Si 0.80 20.53 26.54 -169.99 -4.51 16.02 16 17 H -0.25 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.25 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.22 -5.73 5.61 56.52 0.32 -5.41 16 20 C 0.20 3.46 6.87 -4.51 -0.03 3.43 16 21 C -0.24 -3.90 5.99 -104.94 -0.63 -4.53 16 22 C 0.05 0.72 11.41 -17.39 -0.20 0.52 16 23 N -0.39 -5.20 3.69 -61.52 -0.23 -5.42 16 24 C 0.14 1.23 7.23 -4.04 -0.03 1.20 16 25 C -0.17 -1.44 10.10 37.16 0.38 -1.07 16 26 N -0.26 -4.21 11.54 33.75 0.39 -3.82 16 27 C 0.09 1.56 6.43 -82.32 -0.53 1.03 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.76 7.11 -51.93 -0.37 1.39 16 36 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.79 6.94 -51.93 -0.36 1.43 16 40 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -35.21 377.66 -8.18 -43.40 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.13 Total: 1.54 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -0.29 Total: -20.10 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.57 Total: -52.32 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -2.06 Total: -60.77 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.51 Total: 16.02 kcal Atomic # 16 Polarization: 66.98 SS G_CDS: -0.45 Total: 66.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.21 -8.18 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192958539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.221 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds