Wall clock time and date at job start Wed Apr 1 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46763 * 124.35033 * 2 1 4 4 C 1.54481 * 105.46869 * 162.96417 * 3 2 1 5 5 C 1.54626 * 101.76789 * 25.41870 * 4 3 2 6 6 H 1.09005 * 110.48308 * 94.00919 * 5 4 3 7 7 N 1.46901 * 110.48727 * 216.52131 * 5 4 3 8 8 C 1.48554 * 110.99654 * 184.70695 * 7 5 4 9 9 C 1.54384 * 104.59309 * 159.04138 * 8 7 5 10 10 H 1.09001 * 110.40764 * 95.08431 * 9 8 7 11 11 N 1.46498 * 110.32277 * 217.24926 * 9 8 7 12 12 C 1.34777 * 119.99828 * 201.81150 * 11 9 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 S 1.81000 * 109.47389 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99715 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00516 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99710 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47098 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47081 * 120.00118 * 20 18 16 23 23 H 1.48496 * 109.47496 * 240.00528 * 20 18 16 24 24 C 1.54261 * 105.05798 * 336.14759 * 9 8 7 25 25 H 1.09001 * 110.32401 * 118.89713 * 24 9 8 26 26 O 1.42899 * 110.32157 * 241.00014 * 24 9 8 27 27 C 1.48563 * 110.99833 * 300.12474 * 7 5 4 28 28 C 1.34420 * 124.34716 * 179.97438 * 2 1 3 29 29 O 1.21284 * 124.94247 * 0.42808 * 28 2 1 30 30 H 1.09004 * 109.47165 * 89.99179 * 1 2 3 31 31 H 1.08997 * 109.47192 * 209.99626 * 1 2 3 32 32 H 1.09000 * 109.46864 * 329.99721 * 1 2 3 33 33 H 1.09008 * 110.24459 * 43.96945 * 3 2 1 34 34 H 1.08993 * 110.32201 * 282.00521 * 3 2 1 35 35 H 1.08999 * 110.96894 * 267.29369 * 4 3 2 36 36 H 1.09000 * 110.96550 * 143.54214 * 4 3 2 37 37 H 1.08997 * 110.41538 * 40.26388 * 8 7 5 38 38 H 1.08999 * 110.41285 * 277.81699 * 8 7 5 39 39 H 0.97001 * 120.00384 * 22.09597 * 11 9 8 40 40 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 41 41 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 42 42 H 0.96991 * 119.99795 * 179.97438 * 19 18 16 43 43 H 0.96705 * 114.00087 * 180.02562 * 26 24 9 44 44 H 1.09005 * 110.40828 * 82.18130 * 27 7 5 45 45 H 1.08992 * 110.51433 * 319.78839 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7009 0.7486 0.4362 5 6 3.6898 -0.7379 0.0108 6 1 4.1218 -0.8535 -0.9832 7 7 4.4211 -1.5574 0.9864 8 6 4.5146 -2.9687 0.5324 9 6 5.7080 -3.5521 1.3189 10 1 5.3591 -4.0579 2.2193 11 7 6.4675 -4.4798 0.4771 12 6 7.2525 -5.4167 1.0451 13 8 7.3262 -5.4951 2.2531 14 6 8.0387 -6.3670 0.1791 15 16 8.9865 -7.4964 1.2290 16 6 9.7850 -8.4655 -0.0070 17 1 9.6075 -8.2605 -1.0524 18 6 10.6431 -9.4920 0.3628 19 7 10.8599 -9.7417 1.6369 20 14 11.4890 -10.5199 -0.9475 21 1 11.0804 -10.0413 -2.2926 22 1 12.9615 -10.3916 -0.8033 23 1 11.0983 -11.9437 -0.7886 24 6 6.5767 -2.3331 1.6918 25 1 6.6527 -2.2395 2.7751 26 8 7.8773 -2.4547 1.1125 27 6 5.8351 -1.1157 1.0990 28 6 2.2235 -1.1098 0.0005 29 8 1.7946 -2.2443 -0.0064 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.8983 1.9384 0.7101 34 1 2.3312 1.6441 -0.9997 35 1 3.8265 0.8449 1.5146 36 1 4.4754 1.3009 -0.0959 37 1 4.7084 -3.0113 -0.5394 38 1 3.5990 -3.5078 0.7757 39 1 6.4087 -4.4172 -0.4891 40 1 7.3539 -6.9406 -0.4454 41 1 8.7210 -5.8009 -0.4550 42 1 11.4592 -10.4592 1.8953 43 1 8.4681 -1.7160 1.3137 44 1 5.9136 -0.2595 1.7690 45 1 6.2369 -0.8670 0.1169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219218010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:48 Heat of formation + Delta-G solvation = -89.377687 kcal Electronic energy + Delta-G solvation = -27756.187655 eV Core-core repulsion = 23707.698982 eV Total energy + Delta-G solvation = -4048.488674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17969 -39.74696 -38.17588 -36.82537 -36.00471 -34.18607 -32.51103 -32.36202 -30.04868 -29.01766 -27.87992 -27.39527 -25.96150 -25.37794 -22.83092 -21.70122 -21.04344 -19.93868 -19.76777 -17.86655 -17.75643 -17.45926 -17.05848 -16.32619 -16.09508 -15.71431 -15.43422 -14.78410 -14.74918 -14.61337 -14.43290 -14.24370 -14.06341 -13.81204 -13.66469 -13.19230 -13.06520 -12.92790 -12.90907 -12.61378 -12.51889 -12.33500 -12.14598 -11.88410 -11.72128 -11.33211 -11.16890 -11.02178 -10.94767 -10.69965 -10.20136 -10.02531 -9.73244 -9.28578 -9.20554 -9.01540 -8.98778 -8.70791 -8.13675 -6.40999 -6.15500 -3.84542 2.10500 2.50577 3.05008 3.25398 3.28323 3.29794 3.34894 3.51842 3.68098 3.89618 3.97462 4.13319 4.26800 4.30072 4.41549 4.45563 4.63775 4.72774 4.80497 4.91243 4.92618 4.97733 5.01711 5.16344 5.17659 5.19477 5.26778 5.28848 5.32927 5.39988 5.58747 5.70298 5.82461 5.93134 6.02064 6.03968 6.24953 6.27341 6.39267 6.61322 6.77358 7.59436 7.66241 7.76563 7.87613 8.41992 8.80746 9.29886 10.92021 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.002005 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.546419 B =13958.403094 C =14370.858083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.625 5.625 3 C 0.105 3.895 4 C -0.126 4.126 5 C 0.040 3.960 6 H 0.083 0.917 7 N -0.486 5.486 8 C 0.031 3.969 9 C 0.153 3.847 10 H 0.106 0.894 11 N -0.716 5.716 12 C 0.543 3.457 13 O -0.520 6.520 14 C -0.150 4.150 15 S -0.060 6.060 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.088 3.912 25 H 0.074 0.926 26 O -0.543 6.543 27 C 0.000 4.000 28 C 0.529 3.471 29 O -0.516 6.516 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.396 0.604 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.267 0.733 43 H 0.375 0.625 44 H 0.088 0.912 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.881 28.707 -5.171 34.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.360 5.360 3 C -0.019 4.019 4 C -0.164 4.164 5 C -0.073 4.073 6 H 0.101 0.899 7 N -0.212 5.212 8 C -0.097 4.097 9 C 0.046 3.954 10 H 0.123 0.877 11 N -0.370 5.370 12 C 0.330 3.670 13 O -0.394 6.394 14 C -0.301 4.301 15 S 0.166 5.834 16 C -0.681 4.681 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.504 5.504 20 Si 0.745 3.255 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.026 3.974 25 H 0.092 0.908 26 O -0.346 6.346 27 C -0.128 4.128 28 C 0.315 3.685 29 O -0.390 6.390 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.230 0.770 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.221 0.779 44 H 0.106 0.894 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.538 27.332 -2.747 33.139 hybrid contribution 1.003 0.217 -3.351 3.505 sum -17.534 27.549 -6.098 33.220 Atomic orbital electron populations 1.21558 0.77659 1.03338 1.01913 1.48056 1.06605 1.07241 1.74140 1.22097 0.90344 0.87471 1.01970 1.22734 0.96602 0.93230 1.03861 1.22533 0.93409 0.94832 0.96489 0.89899 1.65359 1.11897 1.02085 1.41822 1.23473 0.99487 0.88921 0.97816 1.21649 0.89384 0.88890 0.95494 0.87652 1.45655 1.47985 1.33970 1.09349 1.20128 0.78240 0.79854 0.88811 1.90672 1.63019 1.71069 1.14647 1.23496 1.02240 1.00986 1.03379 1.85365 1.53872 1.34765 1.09354 1.22928 1.31533 1.19603 0.94079 0.90948 1.24994 0.96008 0.96632 0.96057 1.70034 1.35169 1.30104 1.15059 0.86124 0.78991 0.79568 0.80842 1.19651 1.20623 1.20608 1.22907 0.83698 0.93716 0.97051 0.90837 1.86667 1.22895 1.48763 1.76289 1.23974 0.88266 0.99332 1.01205 1.20500 0.88420 0.84442 0.75121 1.90730 1.78273 1.20902 1.49076 0.92578 0.90494 0.90929 0.89970 0.90934 0.88568 0.89028 0.92803 0.87532 0.77003 0.89508 0.89288 0.92318 0.77890 0.89406 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 10.96 59.85 0.66 1.17 16 2 N -0.62 -4.37 3.33 -180.28 -0.60 -4.97 16 3 C 0.10 0.38 7.35 -3.12 -0.02 0.35 16 4 C -0.13 -0.51 5.94 -25.10 -0.15 -0.66 16 5 C 0.04 0.30 2.43 -67.73 -0.16 0.14 16 6 H 0.08 0.59 7.98 -51.93 -0.41 0.17 16 7 N -0.49 -4.48 5.18 -222.04 -1.15 -5.63 16 8 C 0.03 0.35 5.40 -2.18 -0.01 0.33 16 9 C 0.15 2.01 3.36 -66.55 -0.22 1.79 16 10 H 0.11 1.61 7.65 -51.93 -0.40 1.21 16 11 N -0.72 -10.69 4.33 -52.46 -0.23 -10.91 16 12 C 0.54 10.87 7.45 -10.98 -0.08 10.79 16 13 O -0.52 -12.38 15.56 5.55 0.09 -12.30 16 14 C -0.15 -3.23 6.16 36.01 0.22 -3.01 16 15 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 16 C -0.53 -15.64 9.50 30.94 0.29 -15.35 16 17 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.74 13.22 55.49 0.73 -26.01 16 20 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.09 0.98 4.41 -25.35 -0.11 0.87 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 O -0.54 -6.67 12.04 -35.23 -0.42 -7.09 16 27 C 0.00 0.00 5.50 -2.18 -0.01 -0.01 16 28 C 0.53 5.33 7.61 -10.86 -0.08 5.24 16 29 O -0.52 -7.23 15.68 5.55 0.09 -7.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.17 8.14 -51.92 -0.42 -0.25 16 34 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.10 0.43 8.01 -51.93 -0.42 0.01 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.05 0.56 7.48 -51.93 -0.39 0.18 16 38 H 0.11 1.38 6.99 -51.93 -0.36 1.01 16 39 H 0.40 4.96 8.34 -40.82 -0.34 4.62 16 40 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.37 2.94 9.12 45.56 0.42 3.36 16 44 H 0.09 0.52 7.96 -51.93 -0.41 0.11 16 45 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -39.37 383.01 -8.81 -48.18 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.07 Total: 3.46 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 0.22 Total: 3.67 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -1.24 Total: -47.53 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.25 Total: -26.54 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.37 -8.81 -48.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219218010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.194 kcal (2) G-P(sol) polarization free energy of solvation -39.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds