Wall clock time and date at job start Wed Apr 1 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46763 * 124.35033 * 2 1 4 4 C 1.54481 * 105.46869 * 162.96417 * 3 2 1 5 5 C 1.54626 * 101.76789 * 25.41870 * 4 3 2 6 6 H 1.09005 * 110.48308 * 94.00919 * 5 4 3 7 7 N 1.46901 * 110.48727 * 216.52131 * 5 4 3 8 8 C 1.48554 * 110.99654 * 184.70695 * 7 5 4 9 9 C 1.54384 * 104.59309 * 159.04138 * 8 7 5 10 10 H 1.09001 * 110.40764 * 95.08431 * 9 8 7 11 11 N 1.46498 * 110.32277 * 217.24926 * 9 8 7 12 12 C 1.34777 * 119.99828 * 201.81150 * 11 9 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 S 1.81000 * 109.47389 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99715 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00516 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99710 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47098 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47081 * 120.00118 * 20 18 16 23 23 H 1.48496 * 109.47496 * 240.00528 * 20 18 16 24 24 C 1.54261 * 105.05798 * 336.14759 * 9 8 7 25 25 H 1.09001 * 110.32401 * 118.89713 * 24 9 8 26 26 O 1.42899 * 110.32157 * 241.00014 * 24 9 8 27 27 C 1.48563 * 110.99833 * 300.12474 * 7 5 4 28 28 C 1.34420 * 124.34716 * 179.97438 * 2 1 3 29 29 O 1.21284 * 124.94247 * 0.42808 * 28 2 1 30 30 H 1.09004 * 109.47165 * 89.99179 * 1 2 3 31 31 H 1.08997 * 109.47192 * 209.99626 * 1 2 3 32 32 H 1.09000 * 109.46864 * 329.99721 * 1 2 3 33 33 H 1.09008 * 110.24459 * 43.96945 * 3 2 1 34 34 H 1.08993 * 110.32201 * 282.00521 * 3 2 1 35 35 H 1.08999 * 110.96894 * 267.29369 * 4 3 2 36 36 H 1.09000 * 110.96550 * 143.54214 * 4 3 2 37 37 H 1.08997 * 110.41538 * 40.26388 * 8 7 5 38 38 H 1.08999 * 110.41285 * 277.81699 * 8 7 5 39 39 H 0.97001 * 120.00384 * 22.09597 * 11 9 8 40 40 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 41 41 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 42 42 H 0.96991 * 119.99795 * 179.97438 * 19 18 16 43 43 H 0.96705 * 114.00087 * 180.02562 * 26 24 9 44 44 H 1.09005 * 110.40828 * 82.18130 * 27 7 5 45 45 H 1.08992 * 110.51433 * 319.78839 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7009 0.7486 0.4362 5 6 3.6898 -0.7379 0.0108 6 1 4.1218 -0.8535 -0.9832 7 7 4.4211 -1.5574 0.9864 8 6 4.5146 -2.9687 0.5324 9 6 5.7080 -3.5521 1.3189 10 1 5.3591 -4.0579 2.2193 11 7 6.4675 -4.4798 0.4771 12 6 7.2525 -5.4167 1.0451 13 8 7.3262 -5.4951 2.2531 14 6 8.0387 -6.3670 0.1791 15 16 8.9865 -7.4964 1.2290 16 6 9.7850 -8.4655 -0.0070 17 1 9.6075 -8.2605 -1.0524 18 6 10.6431 -9.4920 0.3628 19 7 10.8599 -9.7417 1.6369 20 14 11.4890 -10.5199 -0.9475 21 1 11.0804 -10.0413 -2.2926 22 1 12.9615 -10.3916 -0.8033 23 1 11.0983 -11.9437 -0.7886 24 6 6.5767 -2.3331 1.6918 25 1 6.6527 -2.2395 2.7751 26 8 7.8773 -2.4547 1.1125 27 6 5.8351 -1.1157 1.0990 28 6 2.2235 -1.1098 0.0005 29 8 1.7946 -2.2443 -0.0064 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.8983 1.9384 0.7101 34 1 2.3312 1.6441 -0.9997 35 1 3.8265 0.8449 1.5146 36 1 4.4754 1.3009 -0.0959 37 1 4.7084 -3.0113 -0.5394 38 1 3.5990 -3.5078 0.7757 39 1 6.4087 -4.4172 -0.4891 40 1 7.3539 -6.9406 -0.4454 41 1 8.7210 -5.8009 -0.4550 42 1 11.4592 -10.4592 1.8953 43 1 8.4681 -1.7160 1.3137 44 1 5.9136 -0.2595 1.7690 45 1 6.2369 -0.8670 0.1169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219218010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:48 Heat of formation + Delta-G solvation = -123.815877 kcal Electronic energy + Delta-G solvation = -27757.681007 eV Core-core repulsion = 23707.698982 eV Total energy + Delta-G solvation = -4049.982026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85157 -40.87482 -39.42077 -37.51798 -36.82482 -35.41734 -34.58342 -33.25636 -31.32974 -29.86160 -28.97543 -27.93297 -27.65519 -26.55744 -23.45002 -22.50184 -22.18186 -21.10177 -20.41536 -19.82879 -18.72790 -18.16728 -17.83412 -17.58637 -17.06291 -16.88439 -16.65144 -16.40698 -16.20219 -15.78406 -15.42033 -15.01794 -14.86831 -14.77408 -14.56656 -14.49694 -14.40544 -13.88198 -13.60109 -13.59059 -13.39164 -13.15865 -13.09679 -13.01073 -12.91860 -12.80656 -12.60431 -12.33981 -12.12632 -11.97451 -11.70343 -11.15666 -11.01614 -10.93131 -10.78740 -10.26958 -10.05818 -9.75266 -9.66111 -8.65822 -8.34561 -6.12320 1.26151 1.40904 1.41209 1.47452 1.58399 1.69158 2.01467 2.19783 2.27998 2.91060 2.99151 3.15941 3.25499 3.35196 3.45293 3.55171 3.74903 3.99129 4.03009 4.03338 4.14132 4.19629 4.31318 4.32282 4.37564 4.38947 4.50467 4.55846 4.64132 4.71905 4.84118 4.84648 4.85755 4.91969 4.98280 5.12280 5.34636 5.41964 5.54317 5.63711 5.75848 6.06791 6.20246 6.51710 6.89403 7.06401 7.11329 7.29885 8.75070 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.002005 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.546419 B =13958.403094 C =14370.858083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.624 5.624 3 C 0.101 3.899 4 C -0.116 4.116 5 C 0.039 3.961 6 H 0.093 0.907 7 N -0.496 5.496 8 C 0.045 3.955 9 C 0.144 3.856 10 H 0.076 0.924 11 N -0.692 5.692 12 C 0.545 3.455 13 O -0.566 6.566 14 C -0.126 4.126 15 S -0.148 6.148 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 1.001 2.999 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.273 1.273 24 C 0.089 3.911 25 H 0.065 0.935 26 O -0.566 6.566 27 C 0.018 3.982 28 C 0.511 3.489 29 O -0.572 6.572 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.411 0.589 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.271 0.729 43 H 0.394 0.606 44 H 0.116 0.884 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 31.786 -7.582 37.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.357 5.357 3 C -0.021 4.021 4 C -0.154 4.154 5 C -0.073 4.073 6 H 0.110 0.890 7 N -0.222 5.222 8 C -0.083 4.083 9 C 0.038 3.962 10 H 0.094 0.906 11 N -0.345 5.345 12 C 0.331 3.669 13 O -0.444 6.444 14 C -0.278 4.278 15 S 0.080 5.920 16 C -0.694 4.694 17 H 0.099 0.901 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.199 1.199 24 C 0.028 3.972 25 H 0.083 0.917 26 O -0.372 6.372 27 C -0.109 4.109 28 C 0.298 3.702 29 O -0.451 6.451 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.248 0.752 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.244 0.756 44 H 0.134 0.866 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.481 30.521 -5.190 36.055 hybrid contribution 0.848 -0.603 -2.592 2.793 sum -17.633 29.918 -7.782 35.589 Atomic orbital electron populations 1.21681 0.77118 1.03671 1.02501 1.48298 1.07369 1.07741 1.72319 1.22403 0.89488 0.86319 1.03901 1.22809 0.97823 0.90479 1.04255 1.22644 0.91423 0.96626 0.96633 0.88999 1.65341 1.13044 1.01065 1.42708 1.23191 0.97049 0.90284 0.97775 1.21777 0.90681 0.89259 0.94519 0.90583 1.45374 1.46158 1.32635 1.10307 1.19881 0.78650 0.80428 0.87931 1.90658 1.64880 1.72473 1.16375 1.23326 1.02060 1.00059 1.02315 1.85537 1.55834 1.37456 1.13222 1.23243 1.31903 1.20042 0.94226 0.90073 1.26157 0.96575 0.97890 0.98664 1.70194 1.36026 1.30954 1.17603 0.84881 0.77691 0.77394 0.77806 1.18122 1.19742 1.19881 1.22818 0.83556 0.93916 0.96901 0.91661 1.86598 1.23659 1.50524 1.76461 1.23888 0.86546 0.98154 1.02360 1.21101 0.89999 0.84354 0.74714 1.90695 1.79391 1.23127 1.51860 0.91887 0.92805 0.87937 0.87769 0.88848 0.88599 0.86035 0.91890 0.89992 0.75243 0.87710 0.87588 0.91971 0.75649 0.86609 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.96 127.77 1.40 2.27 16 2 N -0.62 -7.58 3.33 -842.88 -2.81 -10.39 16 3 C 0.10 0.33 7.35 86.83 0.64 0.97 16 4 C -0.12 -0.46 5.94 31.65 0.19 -0.28 16 5 C 0.04 0.49 2.43 44.91 0.11 0.60 16 6 H 0.09 1.02 7.98 -2.38 -0.02 1.00 16 7 N -0.50 -8.37 5.18 -856.40 -4.44 -12.81 16 8 C 0.05 1.01 5.40 86.45 0.47 1.48 16 9 C 0.14 3.85 3.36 45.89 0.15 4.00 16 10 H 0.08 2.49 7.65 -2.39 -0.02 2.47 16 11 N -0.69 -20.52 4.33 -438.28 -1.90 -22.42 16 12 C 0.55 22.17 7.45 87.66 0.65 22.82 16 13 O -0.57 -28.10 15.56 -3.04 -0.05 -28.15 16 14 C -0.13 -5.44 6.16 71.24 0.44 -5.00 16 15 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 16 C -0.55 -32.32 9.50 67.96 0.65 -31.67 16 17 H 0.08 4.49 7.80 -2.91 -0.02 4.46 16 18 C 0.01 0.69 5.49 84.86 0.47 1.15 16 19 N -0.91 -57.29 13.22 21.65 0.29 -57.00 16 20 Si 1.00 44.79 29.55 68.60 2.03 46.81 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 C 0.09 1.90 4.41 31.49 0.14 2.04 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 O -0.57 -13.10 12.04 -148.98 -1.79 -14.89 16 27 C 0.02 0.23 5.50 86.45 0.48 0.70 16 28 C 0.51 9.98 7.61 87.90 0.67 10.64 16 29 O -0.57 -16.79 15.68 -3.04 -0.05 -16.84 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.77 7.93 -2.39 -0.02 0.75 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.10 -0.05 8.14 -2.38 -0.02 -0.07 16 34 H 0.09 -0.01 8.14 -2.39 -0.02 -0.02 16 35 H 0.10 0.45 8.01 -2.39 -0.02 0.43 16 36 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.06 1.26 7.48 -2.39 -0.02 1.24 16 38 H 0.08 2.26 6.99 -2.39 -0.02 2.24 16 39 H 0.41 9.77 8.34 -92.71 -0.77 8.99 16 40 H 0.10 4.12 8.14 -2.40 -0.02 4.10 16 41 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 42 H 0.27 15.73 8.31 -92.72 -0.77 14.96 16 43 H 0.39 5.42 9.12 -74.05 -0.68 4.74 16 44 H 0.12 0.89 7.96 -2.38 -0.02 0.87 16 45 H 0.07 0.76 7.94 -2.39 -0.02 0.74 16 Total: -1.00 -90.91 383.01 -3.86 -94.77 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.42 Total: 20.92 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 6.44 Total: 9.73 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -8.86 Total: -102.62 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -1.89 Total: -59.88 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -90.91 -3.86 -94.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219218010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.044 kcal (2) G-P(sol) polarization free energy of solvation -90.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds