Wall clock time and date at job start Wed Apr 1 2020 02:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47461 * 2 1 4 4 C 1.34236 * 116.99984 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00222 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99415 * 180.02562 * 4 3 2 7 7 N 1.46908 * 109.46542 * 179.97438 * 6 4 3 8 8 C 1.46905 * 110.99733 * 72.64921 * 7 6 4 9 9 C 1.50707 * 109.46973 * 190.51635 * 8 7 6 10 10 H 1.07997 * 119.99472 * 5.12035 * 9 8 7 11 11 C 1.37868 * 119.99936 * 185.11797 * 9 8 7 12 12 N 1.31513 * 120.00228 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00102 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47313 * 90.00144 * 13 11 9 15 15 H 1.48499 * 109.47111 * 209.99834 * 13 11 9 16 16 H 1.48500 * 109.47242 * 329.99987 * 13 11 9 17 17 C 1.46897 * 110.99746 * 196.60024 * 7 6 4 18 18 C 1.52999 * 109.46801 * 77.83428 * 17 7 6 19 19 H 1.09000 * 109.47445 * 53.28651 * 18 17 7 20 20 O 1.42905 * 109.47285 * 293.28758 * 18 17 7 21 21 C 1.50700 * 109.47494 * 173.28605 * 18 17 7 22 22 C 1.38261 * 119.96223 * 265.00316 * 21 18 17 23 23 C 1.38213 * 120.06862 * 179.97438 * 22 21 18 24 24 C 1.38413 * 119.99993 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.03660 * 180.02562 * 24 23 22 26 26 C 1.38653 * 119.93119 * 0.02562 * 24 23 22 27 27 F 1.35096 * 120.03519 * 179.97438 * 26 24 23 28 28 C 1.38215 * 119.96517 * 84.71924 * 21 18 17 29 29 H 1.09003 * 109.46908 * 300.00426 * 1 2 3 30 30 H 1.09007 * 109.46794 * 60.00064 * 1 2 3 31 31 H 1.08996 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47417 * 239.99707 * 2 1 3 33 33 H 1.09001 * 109.47009 * 120.00321 * 2 1 3 34 34 H 1.08996 * 109.47599 * 60.00358 * 6 4 3 35 35 H 1.08998 * 109.47278 * 299.99594 * 6 4 3 36 36 H 1.08996 * 109.47484 * 310.51798 * 8 7 6 37 37 H 1.09004 * 109.46659 * 70.52337 * 8 7 6 38 38 H 0.96994 * 120.00738 * 180.02562 * 12 11 9 39 39 H 1.08994 * 109.47516 * 317.83400 * 17 7 6 40 40 H 1.08998 * 109.46920 * 197.83082 * 17 7 6 41 41 H 0.96708 * 113.99388 * 299.99693 * 20 18 17 42 42 H 1.07999 * 119.96461 * 359.97272 * 22 21 18 43 43 H 1.08000 * 120.00327 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.99923 * 359.97438 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 7 5.3879 2.8603 0.0023 8 6 5.8931 2.4245 -1.3065 9 6 7.3628 2.1089 -1.1978 10 1 7.8522 2.1410 -0.2357 11 6 8.0823 1.7793 -2.3267 12 7 9.3649 1.5044 -2.2321 13 14 7.2358 1.7246 -3.9910 14 1 7.3171 3.0617 -4.6320 15 1 7.9067 0.7201 -4.8548 16 1 5.8108 1.3484 -3.8094 17 6 5.9821 4.1452 0.3947 18 6 5.8882 4.3078 1.9131 19 1 6.3227 3.4345 2.3997 20 8 4.5168 4.4328 2.2950 21 6 6.6413 5.5436 2.3336 22 6 7.9537 5.4419 2.7567 23 6 8.6466 6.5740 3.1423 24 6 8.0269 7.8111 3.1046 25 9 8.7037 8.9181 3.4809 26 6 6.7109 7.9130 2.6803 27 9 6.1038 9.1193 2.6432 28 6 6.0212 6.7781 2.2902 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5846 3.4692 0.8911 35 1 3.5853 3.4697 -0.8888 36 1 5.3529 1.5335 -1.6262 37 1 5.7455 3.2205 -2.0364 38 1 9.8713 1.2729 -3.0263 39 1 5.4435 4.9583 -0.0918 40 1 7.0285 4.1694 0.0907 41 1 4.0657 5.1907 1.8984 42 1 8.4378 4.4770 2.7859 43 1 9.6715 6.4933 3.4730 44 1 4.9976 6.8567 1.9548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253359321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:59 Heat of formation + Delta-G solvation = -185.908985 kcal Electronic energy + Delta-G solvation = -30169.835331 eV Core-core repulsion = 25531.027609 eV Total energy + Delta-G solvation = -4638.807722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.58342 -48.66105 -40.17009 -39.70004 -37.66670 -36.37630 -35.34435 -32.51481 -31.80959 -31.54401 -30.98478 -28.82448 -28.46398 -25.53855 -23.66459 -23.18552 -22.91610 -21.47141 -21.11182 -20.03375 -18.32303 -17.48209 -17.39037 -17.20873 -16.94370 -16.43359 -16.39286 -16.32296 -15.88919 -15.25888 -15.07867 -15.03376 -14.62207 -14.29094 -14.23831 -14.00777 -13.76022 -13.65727 -13.16006 -12.98231 -12.87461 -12.73581 -12.44779 -12.21193 -12.18041 -11.89077 -11.61494 -11.49635 -11.48534 -11.36764 -11.06292 -10.77961 -10.70678 -10.33453 -10.12282 -9.86032 -9.58500 -9.31845 -9.23335 -8.75104 -8.59769 -7.63725 -6.09055 -4.05625 0.74164 0.83733 2.72597 2.87787 3.17682 3.24049 3.33241 3.36015 3.61689 4.13321 4.25910 4.35096 4.38988 4.41266 4.73772 4.89497 4.93638 4.94720 4.96646 5.10238 5.23563 5.30246 5.30432 5.32882 5.52307 5.55627 5.61955 5.68491 5.71303 5.74943 5.76624 5.88847 5.90906 5.98109 6.26615 6.33316 6.58148 6.68836 6.76141 6.82539 7.50640 7.53171 7.68565 7.81507 8.28753 8.58287 8.98180 9.52945 11.03882 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008381 B = 0.003579 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.132145 B = 7822.347344 C =10392.766810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.456 3.544 5 O -0.474 6.474 6 C 0.048 3.952 7 N -0.507 5.507 8 C 0.160 3.840 9 C -0.505 4.505 10 H 0.082 0.918 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.872 3.128 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.269 1.269 17 C 0.037 3.963 18 C 0.150 3.850 19 H 0.128 0.872 20 O -0.549 6.549 21 C -0.086 4.086 22 C -0.082 4.082 23 C -0.121 4.121 24 C 0.061 3.939 25 F -0.132 7.132 26 C 0.067 3.933 27 F -0.131 7.131 28 C -0.121 4.121 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.061 0.939 36 H 0.038 0.962 37 H -0.016 1.016 38 H 0.264 0.736 39 H 0.033 0.967 40 H 0.112 0.888 41 H 0.367 0.633 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 8.554 9.102 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.289 6.289 4 C 0.296 3.704 5 O -0.357 6.357 6 C -0.081 4.081 7 N -0.231 5.231 8 C 0.034 3.966 9 C -0.543 4.543 10 H 0.100 0.900 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.699 3.301 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.194 1.194 17 C -0.091 4.091 18 C 0.090 3.910 19 H 0.145 0.855 20 O -0.355 6.355 21 C -0.088 4.088 22 C -0.100 4.100 23 C -0.139 4.139 24 C 0.041 3.959 25 F -0.110 7.110 26 C 0.047 3.953 27 F -0.110 7.110 28 C -0.140 4.140 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.001 0.999 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.130 0.870 41 H 0.215 0.785 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.992 7.354 9.673 16.385 hybrid contribution -0.555 1.287 -1.951 2.402 sum -11.547 8.641 7.722 16.360 Atomic orbital electron populations 1.21784 0.93078 1.02606 1.03242 1.22906 0.94859 0.80975 1.02514 1.86467 1.25506 1.31785 1.85098 1.23797 0.79939 0.93350 0.73299 1.90720 1.59779 1.42601 1.42629 1.21970 0.91403 0.90428 1.04345 1.61482 1.01107 1.27123 1.33402 1.20343 0.97908 0.94671 0.83684 1.20908 0.90892 1.46407 0.96071 0.89963 1.24845 0.94668 0.94920 0.98661 1.69869 1.06925 1.47397 1.29508 0.86920 0.80304 0.78056 0.84817 1.20361 1.21059 1.19393 1.22715 1.03473 0.89913 0.92987 1.21155 0.80372 0.93902 0.95536 0.85468 1.86669 1.23363 1.51749 1.73678 1.20599 0.95213 0.95251 0.97701 1.21089 0.93365 0.99270 0.96258 1.21129 1.01464 0.90074 1.01281 1.17715 0.89745 0.84184 1.04255 1.91518 1.79455 1.50993 1.89084 1.17574 0.90631 0.81733 1.05334 1.91520 1.82868 1.42182 1.94420 1.20752 1.01114 0.90402 1.01726 0.91621 0.91703 0.90578 0.91529 0.91401 0.85356 0.92081 0.94394 0.99876 0.92645 0.94933 0.86975 0.78529 0.83320 0.83441 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -5.61 10.22 -39.27 -0.40 -6.01 16 4 C 0.46 8.16 7.60 36.01 0.27 8.44 16 5 O -0.47 -10.40 14.72 -18.75 -0.28 -10.67 16 6 C 0.05 0.75 5.36 -4.97 -0.03 0.73 16 7 N -0.51 -9.68 4.03 -237.51 -0.96 -10.64 16 8 C 0.16 3.74 3.40 -4.97 -0.02 3.72 16 9 C -0.50 -13.76 8.66 -34.44 -0.30 -14.05 16 10 H 0.08 2.40 7.82 -52.49 -0.41 1.99 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 13 Si 0.87 21.36 27.37 -169.99 -4.65 16.71 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.50 6.69 56.52 0.38 -6.12 16 17 C 0.04 0.58 4.62 -3.83 -0.02 0.57 16 18 C 0.15 1.90 3.43 -27.88 -0.10 1.81 16 19 H 0.13 1.80 8.05 -51.93 -0.42 1.38 16 20 O -0.55 -6.27 10.43 -35.23 -0.37 -6.64 16 21 C -0.09 -0.98 5.00 -104.62 -0.52 -1.50 16 22 C -0.08 -0.90 9.68 -39.58 -0.38 -1.28 16 23 C -0.12 -1.28 10.02 -39.53 -0.40 -1.67 16 24 C 0.06 0.73 7.31 -39.36 -0.29 0.44 16 25 F -0.13 -1.68 17.18 2.25 0.04 -1.65 16 26 C 0.07 0.80 7.31 -39.36 -0.29 0.51 16 27 F -0.13 -1.65 17.18 2.25 0.04 -1.61 16 28 C -0.12 -1.28 9.30 -39.53 -0.37 -1.64 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.13 1.69 4.94 -51.93 -0.26 1.43 16 35 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.04 0.97 5.83 -51.93 -0.30 0.67 16 37 H -0.02 -0.38 7.26 -51.93 -0.38 -0.75 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.03 0.44 7.97 -51.93 -0.41 0.03 16 40 H 0.11 2.05 6.70 -51.93 -0.35 1.70 16 41 H 0.37 2.82 7.20 45.56 0.33 3.15 16 42 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.14 1.14 6.62 -52.49 -0.35 0.79 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -33.49 375.18 -7.14 -40.63 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.08 Total: 2.22 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.91 Total: -1.98 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.18 Total: -36.67 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.04 Total: -23.32 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.65 Total: 16.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.49 -7.14 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253359321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.275 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds