Wall clock time and date at job start Wed Apr 1 2020 02:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47461 * 2 1 4 4 C 1.34236 * 116.99984 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00222 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99415 * 180.02562 * 4 3 2 7 7 N 1.46908 * 109.46542 * 179.97438 * 6 4 3 8 8 C 1.46905 * 110.99733 * 72.64921 * 7 6 4 9 9 C 1.50707 * 109.46973 * 190.51635 * 8 7 6 10 10 H 1.07997 * 119.99472 * 5.12035 * 9 8 7 11 11 C 1.37868 * 119.99936 * 185.11797 * 9 8 7 12 12 N 1.31513 * 120.00228 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00102 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47313 * 90.00144 * 13 11 9 15 15 H 1.48499 * 109.47111 * 209.99834 * 13 11 9 16 16 H 1.48500 * 109.47242 * 329.99987 * 13 11 9 17 17 C 1.46897 * 110.99746 * 196.60024 * 7 6 4 18 18 C 1.52999 * 109.46801 * 77.83428 * 17 7 6 19 19 H 1.09000 * 109.47445 * 53.28651 * 18 17 7 20 20 O 1.42905 * 109.47285 * 293.28758 * 18 17 7 21 21 C 1.50700 * 109.47494 * 173.28605 * 18 17 7 22 22 C 1.38261 * 119.96223 * 265.00316 * 21 18 17 23 23 C 1.38213 * 120.06862 * 179.97438 * 22 21 18 24 24 C 1.38413 * 119.99993 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.03660 * 180.02562 * 24 23 22 26 26 C 1.38653 * 119.93119 * 0.02562 * 24 23 22 27 27 F 1.35096 * 120.03519 * 179.97438 * 26 24 23 28 28 C 1.38215 * 119.96517 * 84.71924 * 21 18 17 29 29 H 1.09003 * 109.46908 * 300.00426 * 1 2 3 30 30 H 1.09007 * 109.46794 * 60.00064 * 1 2 3 31 31 H 1.08996 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47417 * 239.99707 * 2 1 3 33 33 H 1.09001 * 109.47009 * 120.00321 * 2 1 3 34 34 H 1.08996 * 109.47599 * 60.00358 * 6 4 3 35 35 H 1.08998 * 109.47278 * 299.99594 * 6 4 3 36 36 H 1.08996 * 109.47484 * 310.51798 * 8 7 6 37 37 H 1.09004 * 109.46659 * 70.52337 * 8 7 6 38 38 H 0.96994 * 120.00738 * 180.02562 * 12 11 9 39 39 H 1.08994 * 109.47516 * 317.83400 * 17 7 6 40 40 H 1.08998 * 109.46920 * 197.83082 * 17 7 6 41 41 H 0.96708 * 113.99388 * 299.99693 * 20 18 17 42 42 H 1.07999 * 119.96461 * 359.97272 * 22 21 18 43 43 H 1.08000 * 120.00327 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.99923 * 359.97438 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 7 5.3879 2.8603 0.0023 8 6 5.8931 2.4245 -1.3065 9 6 7.3628 2.1089 -1.1978 10 1 7.8522 2.1410 -0.2357 11 6 8.0823 1.7793 -2.3267 12 7 9.3649 1.5044 -2.2321 13 14 7.2358 1.7246 -3.9910 14 1 7.3171 3.0617 -4.6320 15 1 7.9067 0.7201 -4.8548 16 1 5.8108 1.3484 -3.8094 17 6 5.9821 4.1452 0.3947 18 6 5.8882 4.3078 1.9131 19 1 6.3227 3.4345 2.3997 20 8 4.5168 4.4328 2.2950 21 6 6.6413 5.5436 2.3336 22 6 7.9537 5.4419 2.7567 23 6 8.6466 6.5740 3.1423 24 6 8.0269 7.8111 3.1046 25 9 8.7037 8.9181 3.4809 26 6 6.7109 7.9130 2.6803 27 9 6.1038 9.1193 2.6432 28 6 6.0212 6.7781 2.2902 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5846 3.4692 0.8911 35 1 3.5853 3.4697 -0.8888 36 1 5.3529 1.5335 -1.6262 37 1 5.7455 3.2205 -2.0364 38 1 9.8713 1.2729 -3.0263 39 1 5.4435 4.9583 -0.0918 40 1 7.0285 4.1694 0.0907 41 1 4.0657 5.1907 1.8984 42 1 8.4378 4.4770 2.7859 43 1 9.6715 6.4933 3.4730 44 1 4.9976 6.8567 1.9548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253359321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:59 Heat of formation + Delta-G solvation = -208.497675 kcal Electronic energy + Delta-G solvation = -30170.814850 eV Core-core repulsion = 25531.027609 eV Total energy + Delta-G solvation = -4639.787242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.52445 -49.60766 -41.47670 -40.70139 -38.84099 -37.58760 -36.71918 -34.57473 -32.78581 -32.49631 -31.85475 -30.48922 -29.71775 -26.93064 -24.82080 -24.14046 -24.09611 -22.75073 -22.30378 -21.45397 -19.25352 -19.04722 -18.68973 -18.32652 -18.15821 -17.66632 -17.39077 -17.33712 -17.19774 -16.65173 -16.28960 -16.02987 -15.82132 -15.53761 -15.29769 -15.21565 -15.07726 -14.82567 -14.49742 -14.21522 -14.00491 -13.83602 -13.65534 -13.56193 -13.31242 -13.08833 -12.82394 -12.76918 -12.54660 -12.48123 -12.44775 -12.31005 -12.11676 -11.86528 -11.62278 -11.45601 -11.25853 -10.82906 -10.72030 -10.09452 -9.69663 -9.08372 -8.26118 -6.26482 -0.17849 -0.01365 1.29995 1.34448 1.35227 1.43349 1.69108 2.28134 2.33982 2.72888 3.04202 3.08391 3.26504 3.43996 3.52444 3.67694 3.88930 3.97689 4.02520 4.09414 4.14903 4.16471 4.22718 4.35843 4.38148 4.53499 4.65889 4.71693 4.77505 4.80046 4.85485 4.91143 4.95694 5.00469 5.06122 5.11838 5.17904 5.40863 5.51686 5.60881 5.69936 5.92163 6.28003 6.55221 6.77679 6.78660 6.96414 7.35667 8.90004 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008381 B = 0.003579 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.132145 B = 7822.347344 C =10392.766810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.362 6.362 4 C 0.455 3.545 5 O -0.525 6.525 6 C 0.049 3.951 7 N -0.528 5.528 8 C 0.173 3.827 9 C -0.503 4.503 10 H 0.047 0.953 11 C 0.012 3.988 12 N -0.944 5.944 13 Si 0.935 3.065 14 H -0.260 1.260 15 H -0.285 1.285 16 H -0.263 1.263 17 C 0.039 3.961 18 C 0.169 3.831 19 H 0.107 0.893 20 O -0.551 6.551 21 C -0.090 4.090 22 C -0.088 4.088 23 C -0.118 4.118 24 C 0.049 3.951 25 F -0.139 7.139 26 C 0.056 3.944 27 F -0.136 7.136 28 C -0.110 4.110 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.017 0.983 37 H -0.006 1.006 38 H 0.265 0.735 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.387 0.613 42 H 0.151 0.849 43 H 0.166 0.834 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 9.857 8.807 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.279 6.279 4 C 0.298 3.702 5 O -0.412 6.412 6 C -0.079 4.079 7 N -0.252 5.252 8 C 0.046 3.954 9 C -0.541 4.541 10 H 0.065 0.935 11 C -0.185 4.185 12 N -0.585 5.585 13 Si 0.759 3.241 14 H -0.185 1.185 15 H -0.211 1.211 16 H -0.187 1.187 17 C -0.088 4.088 18 C 0.109 3.891 19 H 0.125 0.875 20 O -0.360 6.360 21 C -0.092 4.092 22 C -0.106 4.106 23 C -0.136 4.136 24 C 0.029 3.971 25 F -0.118 7.118 26 C 0.036 3.964 27 F -0.115 7.115 28 C -0.128 4.128 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.178 0.822 35 H 0.103 0.897 36 H 0.035 0.965 37 H 0.011 0.989 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.238 0.762 42 H 0.169 0.831 43 H 0.184 0.816 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.808 8.698 9.392 18.829 hybrid contribution 0.266 0.865 -1.746 1.966 sum -13.542 9.563 7.646 18.257 Atomic orbital electron populations 1.21794 0.89743 1.04310 1.03898 1.23228 0.97413 0.79719 1.01897 1.86470 1.23917 1.33246 1.84316 1.24281 0.80463 0.93621 0.71835 1.90706 1.61060 1.44243 1.45229 1.22151 0.89086 0.89775 1.06906 1.61272 1.03457 1.29526 1.30971 1.19988 0.94958 0.94197 0.86281 1.21152 0.93066 1.45293 0.94585 0.93462 1.25682 0.95235 0.94871 1.02708 1.70015 1.08591 1.49242 1.30624 0.85902 0.79260 0.78783 0.80110 1.18501 1.21057 1.18745 1.22714 1.01665 0.89211 0.95219 1.20673 0.81340 0.93898 0.93156 0.87490 1.86637 1.22491 1.53129 1.73697 1.20465 0.95227 0.95040 0.98419 1.21241 0.93603 0.99633 0.96169 1.21289 1.02280 0.89365 1.00713 1.17956 0.90110 0.84350 1.04710 1.91496 1.79661 1.51403 1.89240 1.17732 0.90738 0.81972 1.05971 1.91506 1.82924 1.42540 1.94534 1.20961 1.02220 0.89241 1.00417 0.90769 0.91170 0.88370 0.92532 0.91847 0.82197 0.89652 0.96513 0.98869 0.92611 0.91980 0.90255 0.76197 0.83115 0.81620 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.05 1.24 6.19 71.98 0.45 1.68 16 3 O -0.36 -10.32 10.22 -51.47 -0.53 -10.85 16 4 C 0.46 15.81 7.60 71.24 0.54 16.35 16 5 O -0.52 -23.30 14.72 21.97 0.32 -22.98 16 6 C 0.05 1.43 5.36 85.56 0.46 1.89 16 7 N -0.53 -19.74 4.03 -905.34 -3.65 -23.38 16 8 C 0.17 8.05 3.40 85.56 0.29 8.34 16 9 C -0.50 -28.17 8.66 25.60 0.22 -27.95 16 10 H 0.05 2.90 7.82 -2.91 -0.02 2.88 16 11 C 0.01 0.72 5.47 84.65 0.46 1.18 16 12 N -0.94 -58.01 13.96 21.44 0.30 -57.71 16 13 Si 0.93 44.16 27.37 68.60 1.88 46.04 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 16 H -0.26 -12.07 6.69 99.48 0.67 -11.40 16 17 C 0.04 1.18 4.62 86.30 0.40 1.58 16 18 C 0.17 4.06 3.43 29.85 0.10 4.16 16 19 H 0.11 3.04 8.05 -2.39 -0.02 3.02 16 20 O -0.55 -10.82 10.43 -148.98 -1.55 -12.37 16 21 C -0.09 -1.91 5.00 -19.86 -0.10 -2.01 16 22 C -0.09 -1.89 9.68 22.27 0.22 -1.68 16 23 C -0.12 -2.40 10.02 22.31 0.22 -2.17 16 24 C 0.05 1.12 7.31 22.41 0.16 1.28 16 25 F -0.14 -3.47 17.18 44.97 0.77 -2.70 16 26 C 0.06 1.23 7.31 22.41 0.16 1.40 16 27 F -0.14 -3.20 17.18 44.97 0.77 -2.43 16 28 C -0.11 -2.03 9.30 22.31 0.21 -1.82 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.47 8.13 -2.38 -0.02 1.45 16 33 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 34 H 0.16 3.61 4.94 -2.39 -0.01 3.60 16 35 H 0.09 2.15 8.04 -2.39 -0.02 2.13 16 36 H 0.02 0.86 5.83 -2.39 -0.01 0.85 16 37 H -0.01 -0.28 7.26 -2.38 -0.02 -0.30 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.06 1.48 7.97 -2.39 -0.02 1.46 16 40 H 0.08 2.94 6.70 -2.39 -0.02 2.92 16 41 H 0.39 4.13 7.20 -74.05 -0.53 3.60 16 42 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 43 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 44 H 0.17 2.02 6.62 -2.91 -0.02 2.00 16 Total: -1.00 -75.21 375.18 3.33 -71.88 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.47 Total: 13.66 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 4.54 Total: 0.84 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -3.35 Total: -81.10 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.76 Total: -46.20 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 1.55 Total: -5.13 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -75.21 3.33 -71.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253359321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.619 kcal (2) G-P(sol) polarization free energy of solvation -75.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds