Wall clock time and date at job start Wed Apr 1 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47164 * 2 1 4 4 C 1.47203 * 109.47300 * 119.99847 * 2 1 3 5 5 N 2.60802 * 109.47181 * 120.00002 * 2 1 3 6 6 C 1.50698 * 109.47334 * 239.99977 * 2 1 3 7 7 O 1.21274 * 120.00226 * 274.88587 * 6 2 1 8 8 N 1.34783 * 119.99879 * 94.87700 * 6 2 1 9 9 C 1.46801 * 126.87252 * 354.97442 * 8 6 2 10 10 C 1.50676 * 107.52145 * 179.97438 * 9 8 6 11 11 N 1.35226 * 143.67004 * 179.97438 * 10 9 8 12 12 H 0.96994 * 124.90205 * 359.97438 * 11 10 9 13 13 N 1.28490 * 110.19157 * 180.02562 * 11 10 9 14 14 C 1.31873 * 110.05281 * 0.02562 * 13 11 10 15 15 C 1.47701 * 126.58776 * 180.02562 * 14 13 11 16 16 O 1.21572 * 120.00039 * 179.97438 * 15 14 13 17 17 N 1.34779 * 119.99934 * 359.95514 * 15 14 13 18 18 C 1.47066 * 136.05946 * 359.62839 * 17 15 14 19 19 C 1.53237 * 88.08205 * 207.20654 * 18 17 15 20 20 C 1.50703 * 114.32245 * 220.47017 * 19 18 17 21 21 H 1.07998 * 120.00262 * 93.75663 * 20 19 18 22 22 C 1.37884 * 119.99950 * 273.76051 * 20 19 18 23 23 N 1.31519 * 119.99906 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00090 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46848 * 89.99925 * 24 22 20 26 26 H 1.48490 * 109.47276 * 209.99862 * 24 22 20 27 27 H 1.48503 * 109.47056 * 330.00189 * 24 22 20 28 28 C 1.47071 * 136.05816 * 180.02562 * 17 15 14 29 29 C 1.34927 * 109.21093 * 359.97438 * 10 9 8 30 30 C 1.46839 * 126.87317 * 174.87630 * 8 6 2 31 31 H 1.08998 * 109.47004 * 64.96722 * 1 2 3 32 32 H 1.09001 * 109.47036 * 184.96703 * 1 2 3 33 33 H 1.09005 * 109.46711 * 304.96372 * 1 2 3 34 34 H 1.08994 * 109.84560 * 60.46036 * 9 8 6 35 35 H 1.09005 * 109.83938 * 299.44563 * 9 8 6 36 36 H 1.09001 * 113.46695 * 321.94201 * 18 17 15 37 37 H 1.08999 * 113.46669 * 92.37537 * 18 17 15 38 38 H 1.08994 * 114.01849 * 87.72286 * 19 18 17 39 39 H 0.96996 * 119.99552 * 180.02562 * 23 22 20 40 40 H 1.09000 * 113.46436 * 267.62711 * 28 17 15 41 41 H 1.09009 * 113.46225 * 38.06308 * 28 17 15 42 42 H 1.09004 * 109.80801 * 60.58785 * 30 8 6 43 43 H 1.08994 * 110.00173 * 299.57413 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1294 6 6 2.0324 -0.7104 -1.2304 7 8 2.1502 -1.9174 -1.2282 8 7 2.3506 -0.0043 -2.3335 9 6 2.1711 1.4382 -2.5382 10 6 2.6720 1.7660 -3.9210 11 7 2.8471 2.7734 -4.8059 12 1 2.6122 3.7006 -4.6449 13 7 3.3685 2.3248 -5.8912 14 6 3.5655 1.0245 -5.7944 15 6 4.1452 0.1426 -6.8277 16 8 4.2733 -1.0466 -6.6097 17 7 4.5317 0.6561 -8.0123 18 6 4.5359 1.9865 -8.6391 19 6 4.4561 1.2885 -10.0009 20 6 5.3151 1.9134 -11.0700 21 1 6.3119 1.5387 -11.2494 22 6 4.8282 2.9638 -11.8190 23 7 5.5777 3.5088 -12.7522 24 14 3.1038 3.6116 -11.5091 25 1 3.1557 4.6887 -10.4881 26 1 2.5444 4.1543 -12.7731 27 1 2.2405 2.5068 -11.0198 28 6 5.1285 0.1313 -9.2499 29 6 3.1173 0.6372 -4.5110 30 6 2.9480 -0.5237 -3.5702 31 1 -0.3633 0.4348 -0.9311 32 1 -0.3633 -1.0238 0.0890 33 1 -0.3633 0.5889 0.8422 34 1 2.7455 1.9917 -1.7955 35 1 1.1147 1.6947 -2.4573 36 1 3.6519 2.5796 -8.4045 37 1 5.4651 2.5354 -8.4863 38 1 3.4396 1.0758 -10.3316 39 1 5.2353 4.2479 -13.2789 40 1 6.2173 0.1806 -9.2615 41 1 4.7473 -0.8498 -9.5335 42 1 2.2874 -1.2676 -4.0155 43 1 3.9185 -0.9713 -3.3561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271219609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:42 Heat of formation + Delta-G solvation = 109.049418 kcal Electronic energy + Delta-G solvation = -28689.609577 eV Core-core repulsion = 24546.574148 eV Total energy + Delta-G solvation = -4143.035429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.31840 -40.66727 -39.51756 -37.75816 -37.22670 -36.89244 -33.99994 -32.71142 -32.29291 -31.44677 -29.70789 -28.56003 -26.48928 -25.83201 -25.15970 -25.02234 -23.12098 -21.15344 -20.61358 -20.03515 -18.58040 -18.13394 -18.11433 -17.45341 -17.21599 -17.02177 -16.57535 -15.80239 -15.67928 -15.35894 -15.01018 -14.79721 -14.52106 -14.06691 -13.91428 -13.61640 -13.44250 -13.31996 -13.17016 -13.08959 -12.95531 -12.68315 -12.56479 -12.42172 -12.29831 -12.09893 -11.80282 -11.74973 -11.44472 -10.94584 -10.72200 -10.48446 -10.01702 -9.95183 -9.85602 -9.61151 -9.49086 -9.23634 -8.81852 -8.68670 -8.08413 -6.21842 -4.24585 1.37661 1.67618 1.69078 1.84902 2.15632 2.26220 2.56065 3.18986 3.21815 3.24980 3.29057 3.30380 3.56366 3.66121 3.76224 4.16296 4.18695 4.23122 4.29492 4.38234 4.64557 4.66461 4.89196 4.95164 4.97368 5.04262 5.31001 5.34260 5.38379 5.45645 5.55327 5.74846 5.89759 5.95015 6.10729 6.26272 6.37647 6.43156 6.50356 6.62252 6.76556 7.01191 7.17194 7.39054 7.52939 7.53929 8.21859 8.34891 8.53780 8.81491 9.38765 10.90044 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.002206 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.002484 B =12689.339445 C =13340.309997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.004 4.004 3 H 0.135 0.865 4 C 0.216 3.784 5 N -0.405 5.405 6 C 0.550 3.450 7 O -0.509 6.509 8 N -0.611 5.611 9 C 0.191 3.809 10 C -0.038 4.038 11 N -0.352 5.352 12 H 0.448 0.552 13 N -0.225 5.225 14 C 0.042 3.958 15 C 0.613 3.387 16 O -0.546 6.546 17 N -0.629 5.629 18 C 0.094 3.906 19 C -0.016 4.016 20 C -0.509 4.509 21 H 0.081 0.919 22 C 0.077 3.923 23 N -0.892 5.892 24 Si 0.874 3.126 25 H -0.274 1.274 26 H -0.287 1.287 27 H -0.262 1.262 28 C 0.117 3.883 29 C -0.166 4.166 30 C 0.187 3.813 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.266 0.734 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 3.029 23.468 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 H 0.153 0.847 4 C -0.103 4.103 5 N -0.080 5.080 6 C 0.336 3.664 7 O -0.382 6.382 8 N -0.347 5.347 9 C 0.066 3.934 10 C -0.165 4.165 11 N -0.066 5.066 12 H 0.293 0.707 13 N -0.060 5.060 14 C -0.120 4.120 15 C 0.400 3.600 16 O -0.423 6.423 17 N -0.362 5.362 18 C -0.029 4.029 19 C -0.035 4.035 20 C -0.547 4.547 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.529 5.529 24 Si 0.701 3.299 25 H -0.200 1.200 26 H -0.213 1.213 27 H -0.187 1.187 28 C -0.004 4.004 29 C -0.177 4.177 30 C 0.064 3.936 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.170 1.769 24.370 26.867 hybrid contribution -1.107 0.930 0.209 1.461 sum -12.277 2.700 24.579 27.607 Atomic orbital electron populations 1.21779 0.88772 1.04940 1.04541 1.18771 0.99385 0.99665 0.85057 0.84742 1.28039 0.94110 0.94065 0.94088 1.81244 1.07544 1.07521 1.11649 1.19443 0.77938 0.86933 0.82121 1.90841 1.51924 1.13306 1.82167 1.47981 1.62965 1.08350 1.15378 1.19588 1.01610 0.82182 0.90035 1.21392 1.08372 0.89744 0.97004 1.42616 1.45489 1.10236 1.08259 0.70685 1.74073 1.13951 1.11772 1.06176 1.21384 1.06130 0.89884 0.94578 1.16331 0.78670 0.85811 0.79183 1.90776 1.57985 1.14780 1.78750 1.49759 1.58987 1.14555 1.12874 1.23813 1.01328 0.85084 0.92636 1.20903 0.98022 0.92606 0.91994 1.20752 1.01761 1.16278 1.15891 0.90116 1.24996 0.97299 0.96100 0.94215 1.69893 1.37066 1.24352 1.21603 0.86876 0.85348 0.79724 0.77966 1.19951 1.21273 1.18701 1.23184 0.98619 0.99296 0.79351 1.20502 1.06437 0.95976 0.94782 1.19493 1.00006 0.93162 0.80937 0.89794 0.90475 0.89824 0.88880 0.88708 0.91990 0.89672 0.91546 0.92377 0.89822 0.91666 0.88985 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.29 9.13 37.16 0.34 0.05 16 2 C 0.00 -0.02 2.76 -94.56 -0.26 -0.28 16 3 H 0.14 0.00 7.05 -51.93 -0.37 -0.36 16 4 C 0.22 1.77 14.15 -20.76 -0.29 1.48 16 5 N -0.40 -4.62 18.54 42.15 0.78 -3.84 16 6 C 0.55 4.47 6.85 -10.98 -0.08 4.40 16 7 O -0.51 -6.63 16.83 5.56 0.09 -6.53 16 8 N -0.61 -4.57 3.35 -176.11 -0.59 -5.16 16 9 C 0.19 0.76 6.26 -5.04 -0.03 0.72 16 10 C -0.04 -0.30 8.20 -82.28 -0.68 -0.98 16 11 N -0.35 -2.99 6.84 33.45 0.23 -2.76 16 12 H 0.45 1.87 8.96 -190.43 -1.71 0.17 16 13 N -0.22 -3.04 10.79 33.40 0.36 -2.68 16 14 C 0.04 0.64 7.10 -82.80 -0.59 0.06 16 15 C 0.61 11.64 8.08 -12.39 -0.10 11.54 16 16 O -0.55 -11.52 17.70 5.30 0.09 -11.43 16 17 N -0.63 -12.18 3.69 -186.60 -0.69 -12.87 16 18 C 0.09 1.83 6.89 -8.65 -0.06 1.77 16 19 C -0.02 -0.34 2.99 -91.41 -0.27 -0.61 16 20 C -0.51 -12.96 9.38 -34.44 -0.32 -13.28 16 21 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 22 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 24 Si 0.87 19.70 27.42 -169.99 -4.66 15.03 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.26 -5.70 6.21 56.52 0.35 -5.35 16 28 C 0.12 2.29 8.19 -8.53 -0.07 2.22 16 29 C -0.17 -2.03 6.91 -104.77 -0.72 -2.75 16 30 C 0.19 2.06 6.94 -5.16 -0.04 2.03 16 31 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.09 0.10 7.75 -51.93 -0.40 -0.31 16 35 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.06 1.16 7.51 -51.93 -0.39 0.77 16 37 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 38 H 0.07 1.46 6.50 -51.93 -0.34 1.13 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 41 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -36.79 376.18 -7.82 -44.61 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -6.61 Total: -3.76 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -3.27 Total: 8.31 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.86 Total: -51.90 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.19 Total: -17.96 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.66 Total: 15.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.79 -7.82 -44.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271219609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.660 kcal (2) G-P(sol) polarization free energy of solvation -36.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds