Wall clock time and date at job start Wed Apr 1 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46825 * 2 1 4 4 C 1.52999 * 109.47218 * 120.00377 * 2 1 3 5 5 N 1.46494 * 109.47119 * 175.00096 * 4 2 1 6 6 C 1.34778 * 120.00301 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99731 * 354.97880 * 6 5 4 8 8 C 1.50692 * 120.00240 * 174.97799 * 6 5 4 9 9 C 1.50706 * 115.55171 * 279.04894 * 8 6 5 10 10 N 1.34771 * 120.00345 * 294.04909 * 9 8 6 11 11 O 1.21285 * 119.99474 * 114.04265 * 9 8 6 12 12 C 1.52999 * 117.49909 * 133.34465 * 8 6 5 13 13 C 1.52998 * 60.00139 * 252.50932 * 12 8 6 14 14 N 1.46503 * 109.46685 * 240.00024 * 2 1 3 15 15 C 1.46490 * 120.00499 * 299.99813 * 14 2 1 16 16 C 1.34780 * 119.99796 * 120.00082 * 14 2 1 17 17 O 1.21284 * 119.99941 * 0.02562 * 16 14 2 18 18 C 1.50691 * 120.00128 * 179.97438 * 16 14 2 19 19 S 1.81002 * 109.47273 * 180.02562 * 18 16 14 20 20 C 1.76198 * 100.00118 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00139 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99933 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99859 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99823 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46890 * 119.99902 * 24 22 20 27 27 H 1.48505 * 109.47192 * 239.99830 * 24 22 20 28 28 H 1.09001 * 109.46825 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47152 * 60.00100 * 1 2 3 30 30 H 1.08998 * 109.46863 * 299.99415 * 1 2 3 31 31 H 1.09001 * 109.47123 * 294.99759 * 4 2 1 32 32 H 1.09000 * 109.47304 * 54.99663 * 4 2 1 33 33 H 0.96999 * 120.00013 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99751 * 354.98333 * 10 9 8 35 35 H 0.96995 * 120.00270 * 174.97840 * 10 9 8 36 36 H 1.09002 * 117.49807 * 359.97438 * 12 8 6 37 37 H 1.09004 * 117.49897 * 145.01874 * 12 8 6 38 38 H 1.08998 * 117.49997 * 252.51375 * 13 12 8 39 39 H 1.08990 * 117.50142 * 107.48963 * 13 12 8 40 40 H 1.08999 * 109.47137 * 90.00085 * 15 14 2 41 41 H 1.09002 * 109.47536 * 210.00164 * 15 14 2 42 42 H 1.09010 * 109.47225 * 330.00496 * 15 14 2 43 43 H 1.09007 * 109.47146 * 299.99643 * 18 16 14 44 44 H 1.08999 * 109.47579 * 59.99678 * 18 16 14 45 45 H 0.97005 * 119.99677 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1910 7 8 3.5812 -1.8016 3.1815 8 6 5.6613 -1.6376 2.0790 9 6 6.0906 -2.8289 1.2619 10 7 5.8072 -4.0757 1.6879 11 8 6.6910 -2.6655 0.2208 12 6 6.5203 -1.2636 3.2886 13 6 6.5483 -0.3918 2.0316 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0931 -1.4281 16 6 2.7931 -0.0356 -2.0834 17 8 3.0866 1.1254 -1.8912 18 6 3.2958 -0.7461 -3.3136 19 16 4.3019 0.3914 -4.2985 20 6 4.7443 -0.6694 -5.6340 21 1 4.3938 -1.6908 -5.6514 22 6 5.5442 -0.1926 -6.6633 23 7 5.9719 1.0520 -6.6420 24 14 6.0139 -1.3175 -8.0788 25 1 5.4103 -2.6578 -7.8673 26 1 5.5129 -0.7441 -9.3538 27 1 7.4921 -1.4449 -8.1404 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2951 33 1 3.9824 -0.4628 0.4315 34 1 5.3921 -4.2096 2.5543 35 1 6.0182 -4.8392 1.1281 36 1 6.0090 -0.8658 4.1653 37 1 7.3961 -1.8793 3.4937 38 1 7.4424 -0.4340 1.4097 39 1 6.0555 0.5791 2.0814 40 1 0.7375 -2.1443 -1.9994 41 1 2.4628 -2.5818 -1.9865 42 1 1.5295 -2.5969 -0.4709 43 1 3.9017 -1.6023 -3.0166 44 1 2.4483 -1.0891 -3.9070 45 1 6.5306 1.3853 -7.3615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280532391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:25 Heat of formation + Delta-G solvation = -82.119467 kcal Electronic energy + Delta-G solvation = -28468.509841 eV Core-core repulsion = 24420.335908 eV Total energy + Delta-G solvation = -4048.173933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92039 -39.89929 -38.94318 -36.72063 -36.13308 -34.35354 -33.81807 -32.41051 -32.12272 -28.76932 -27.31560 -26.91106 -25.47753 -25.17280 -22.77146 -22.24201 -21.64165 -19.91042 -19.17863 -18.28482 -17.74243 -17.28213 -16.99988 -16.53437 -16.28649 -15.74752 -15.57596 -15.26836 -14.86088 -14.78881 -14.56963 -14.09724 -14.02329 -13.50236 -13.40324 -13.19774 -13.14547 -12.95003 -12.61592 -12.40731 -12.30413 -12.10946 -11.94275 -11.83907 -11.46191 -11.18215 -11.05471 -10.99961 -10.97117 -10.73840 -10.39532 -9.95598 -9.93907 -9.78616 -9.46705 -9.31093 -9.05476 -8.67392 -8.22111 -6.48201 -6.20188 -3.90209 2.03171 2.38801 2.70275 2.87587 2.94633 3.07681 3.23125 3.26751 3.32329 3.47909 3.58931 4.21582 4.30528 4.40757 4.41324 4.48987 4.60954 4.77289 4.97804 5.01032 5.04600 5.15447 5.22074 5.26557 5.30811 5.36897 5.43028 5.44882 5.56182 5.56685 5.67521 5.78510 5.83479 5.89785 5.93229 6.12700 6.14030 6.49580 6.55148 7.01134 7.20428 7.41014 7.61878 7.86881 7.97961 8.37161 8.44995 9.25681 10.87379 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.003482 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.043483 B = 8038.712799 C = 9619.277039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.111 0.889 4 C 0.110 3.890 5 N -0.713 5.713 6 C 0.560 3.440 7 O -0.535 6.535 8 C -0.201 4.201 9 C 0.560 3.440 10 N -0.848 5.848 11 O -0.515 6.515 12 C -0.129 4.129 13 C -0.131 4.131 14 N -0.620 5.620 15 C 0.079 3.921 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.151 4.151 19 S -0.059 6.059 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.405 0.595 35 H 0.405 0.595 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -8.551 20.949 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.018 3.982 3 H 0.128 0.872 4 C -0.015 4.015 5 N -0.364 5.364 6 C 0.344 3.656 7 O -0.412 6.412 8 C -0.208 4.208 9 C 0.342 3.658 10 N -0.412 5.412 11 O -0.389 6.389 12 C -0.166 4.166 13 C -0.168 4.168 14 N -0.357 5.357 15 C -0.064 4.064 16 C 0.322 3.678 17 O -0.389 6.389 18 C -0.301 4.301 19 S 0.168 5.832 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.234 0.766 35 H 0.237 0.763 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.406 -6.670 21.169 23.101 hybrid contribution -0.082 -2.507 -1.384 2.865 sum -6.488 -9.177 19.784 22.754 Atomic orbital electron populations 1.22038 0.93641 1.02667 1.03093 1.21292 0.94972 0.98627 0.83271 0.87151 1.21816 0.79739 1.01526 0.98377 1.45931 1.07859 1.58857 1.23783 1.18993 0.86455 0.77457 0.82650 1.90701 1.69305 1.50911 1.30254 1.21431 0.92756 0.99643 1.06964 1.18986 0.78590 0.83435 0.84754 1.43747 1.65759 1.07716 1.23966 1.90867 1.39339 1.85557 1.23160 1.23071 0.99661 1.02036 0.91845 1.23170 1.00801 0.93027 0.99800 1.47953 1.52356 1.12601 1.22794 1.21739 1.01355 0.81569 1.01750 1.20440 0.76937 0.86792 0.83641 1.90700 1.56218 1.16396 1.75548 1.23559 1.04340 1.04771 0.97442 1.85346 1.61008 1.15086 1.21797 1.22887 1.37260 0.99759 1.08264 0.90946 1.24973 0.95057 0.95521 0.97941 1.70024 1.33215 1.14369 1.32674 0.86132 0.78380 0.80140 0.80938 1.19632 1.20584 1.20540 0.92067 0.91329 0.91188 0.90080 0.91038 0.75316 0.76641 0.76333 0.87026 0.87333 0.86368 0.87088 0.92503 0.90611 0.91512 0.89198 0.89281 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.19 37.16 0.34 -0.95 16 2 C 0.12 1.32 2.80 -67.93 -0.19 1.12 16 3 H 0.11 1.41 6.90 -51.93 -0.36 1.05 16 4 C 0.11 1.09 4.92 -4.05 -0.02 1.07 16 5 N -0.71 -8.29 5.39 -60.30 -0.32 -8.62 16 6 C 0.56 6.66 6.97 -10.99 -0.08 6.58 16 7 O -0.53 -7.23 17.02 5.56 0.09 -7.13 16 8 C -0.20 -2.20 2.25 -156.81 -0.35 -2.55 16 9 C 0.56 6.85 7.34 -10.98 -0.08 6.77 16 10 N -0.85 -7.11 8.87 31.22 0.28 -6.83 16 11 O -0.52 -8.64 17.55 5.55 0.10 -8.55 16 12 C -0.13 -1.07 9.87 -26.73 -0.26 -1.33 16 13 C -0.13 -1.31 9.76 -26.73 -0.26 -1.57 16 14 N -0.62 -7.98 2.24 -173.93 -0.39 -8.37 16 15 C 0.08 0.81 9.30 59.84 0.56 1.36 16 16 C 0.53 9.58 7.40 -10.99 -0.08 9.50 16 17 O -0.51 -10.96 15.19 5.55 0.08 -10.88 16 18 C -0.15 -3.04 4.71 36.00 0.17 -2.87 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.67 6.88 -51.93 -0.36 0.31 16 33 H 0.41 5.48 7.87 -40.82 -0.32 5.16 16 34 H 0.40 2.61 8.83 -40.82 -0.36 2.25 16 35 H 0.41 2.91 8.93 -40.82 -0.36 2.54 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.12 1.28 8.00 -51.93 -0.42 0.87 16 39 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 42 H 0.07 0.56 6.53 -51.92 -0.34 0.22 16 43 H 0.09 1.74 7.40 -51.91 -0.38 1.36 16 44 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -37.27 397.09 -7.30 -44.56 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.56 Total: 8.39 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.06 Total: 4.16 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.30 Total: -49.36 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: 0.28 Total: -26.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.27 -7.30 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280532391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.555 kcal (2) G-P(sol) polarization free energy of solvation -37.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds