Wall clock time and date at job start Wed Apr 1 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46825 * 2 1 4 4 C 1.52999 * 109.47218 * 120.00377 * 2 1 3 5 5 N 1.46494 * 109.47119 * 175.00096 * 4 2 1 6 6 C 1.34778 * 120.00301 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99731 * 354.97880 * 6 5 4 8 8 C 1.50692 * 120.00240 * 174.97799 * 6 5 4 9 9 C 1.50706 * 115.55171 * 279.04894 * 8 6 5 10 10 N 1.34771 * 120.00345 * 294.04909 * 9 8 6 11 11 O 1.21285 * 119.99474 * 114.04265 * 9 8 6 12 12 C 1.52999 * 117.49909 * 133.34465 * 8 6 5 13 13 C 1.52998 * 60.00139 * 252.50932 * 12 8 6 14 14 N 1.46503 * 109.46685 * 240.00024 * 2 1 3 15 15 C 1.46490 * 120.00499 * 299.99813 * 14 2 1 16 16 C 1.34780 * 119.99796 * 120.00082 * 14 2 1 17 17 O 1.21284 * 119.99941 * 0.02562 * 16 14 2 18 18 C 1.50691 * 120.00128 * 179.97438 * 16 14 2 19 19 S 1.81002 * 109.47273 * 180.02562 * 18 16 14 20 20 C 1.76198 * 100.00118 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00139 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99933 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99859 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99823 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46890 * 119.99902 * 24 22 20 27 27 H 1.48505 * 109.47192 * 239.99830 * 24 22 20 28 28 H 1.09001 * 109.46825 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47152 * 60.00100 * 1 2 3 30 30 H 1.08998 * 109.46863 * 299.99415 * 1 2 3 31 31 H 1.09001 * 109.47123 * 294.99759 * 4 2 1 32 32 H 1.09000 * 109.47304 * 54.99663 * 4 2 1 33 33 H 0.96999 * 120.00013 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99751 * 354.98333 * 10 9 8 35 35 H 0.96995 * 120.00270 * 174.97840 * 10 9 8 36 36 H 1.09002 * 117.49807 * 359.97438 * 12 8 6 37 37 H 1.09004 * 117.49897 * 145.01874 * 12 8 6 38 38 H 1.08998 * 117.49997 * 252.51375 * 13 12 8 39 39 H 1.08990 * 117.50142 * 107.48963 * 13 12 8 40 40 H 1.08999 * 109.47137 * 90.00085 * 15 14 2 41 41 H 1.09002 * 109.47536 * 210.00164 * 15 14 2 42 42 H 1.09010 * 109.47225 * 330.00496 * 15 14 2 43 43 H 1.09007 * 109.47146 * 299.99643 * 18 16 14 44 44 H 1.08999 * 109.47579 * 59.99678 * 18 16 14 45 45 H 0.97005 * 119.99677 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1910 7 8 3.5812 -1.8016 3.1815 8 6 5.6613 -1.6376 2.0790 9 6 6.0906 -2.8289 1.2619 10 7 5.8072 -4.0757 1.6879 11 8 6.6910 -2.6655 0.2208 12 6 6.5203 -1.2636 3.2886 13 6 6.5483 -0.3918 2.0316 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0931 -1.4281 16 6 2.7931 -0.0356 -2.0834 17 8 3.0866 1.1254 -1.8912 18 6 3.2958 -0.7461 -3.3136 19 16 4.3019 0.3914 -4.2985 20 6 4.7443 -0.6694 -5.6340 21 1 4.3938 -1.6908 -5.6514 22 6 5.5442 -0.1926 -6.6633 23 7 5.9719 1.0520 -6.6420 24 14 6.0139 -1.3175 -8.0788 25 1 5.4103 -2.6578 -7.8673 26 1 5.5129 -0.7441 -9.3538 27 1 7.4921 -1.4449 -8.1404 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2951 33 1 3.9824 -0.4628 0.4315 34 1 5.3921 -4.2096 2.5543 35 1 6.0182 -4.8392 1.1281 36 1 6.0090 -0.8658 4.1653 37 1 7.3961 -1.8793 3.4937 38 1 7.4424 -0.4340 1.4097 39 1 6.0555 0.5791 2.0814 40 1 0.7375 -2.1443 -1.9994 41 1 2.4628 -2.5818 -1.9865 42 1 1.5295 -2.5969 -0.4709 43 1 3.9017 -1.6023 -3.0166 44 1 2.4483 -1.0891 -3.9070 45 1 6.5306 1.3853 -7.3615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280532391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:24 Heat of formation + Delta-G solvation = -111.780034 kcal Electronic energy + Delta-G solvation = -28469.796020 eV Core-core repulsion = 24420.335908 eV Total energy + Delta-G solvation = -4049.460112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85163 -41.09004 -39.98200 -37.83542 -37.04103 -35.38539 -34.69998 -34.59177 -33.14608 -30.24283 -28.11331 -27.88395 -27.66514 -26.02494 -23.51551 -23.21502 -22.66380 -20.88547 -20.32568 -19.62491 -19.17163 -18.35219 -18.11565 -17.49105 -17.22133 -16.91586 -16.86434 -16.74611 -16.31087 -15.99307 -15.86744 -15.33720 -15.02842 -14.60610 -14.58236 -14.53255 -14.27465 -13.93853 -13.80554 -13.48861 -13.32356 -13.16343 -13.09347 -12.93143 -12.85536 -12.67446 -12.59249 -12.32270 -12.00605 -11.77760 -11.70301 -11.32085 -11.16375 -10.92223 -10.90398 -10.81372 -10.28206 -10.24417 -9.77694 -8.66290 -8.35626 -6.12726 1.09890 1.24103 1.39758 1.43702 1.45306 1.52503 1.55312 1.86680 2.08120 2.26292 2.28050 2.65863 2.98740 3.24767 3.42844 3.53449 3.64582 3.66730 3.78624 3.84286 4.03856 4.10942 4.22079 4.23894 4.44154 4.49652 4.55253 4.59643 4.61760 4.67570 4.75949 4.81748 4.87414 5.02091 5.03652 5.17143 5.29839 5.40938 5.54738 5.74100 6.17490 6.19354 6.21125 6.26198 6.92066 7.06066 7.09209 7.15700 8.73872 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.003482 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.043483 B = 8038.712799 C = 9619.277039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.123 3.877 3 H 0.087 0.913 4 C 0.113 3.887 5 N -0.716 5.716 6 C 0.565 3.435 7 O -0.549 6.549 8 C -0.216 4.216 9 C 0.560 3.440 10 N -0.826 5.826 11 O -0.571 6.571 12 C -0.101 4.101 13 C -0.142 4.142 14 N -0.603 5.603 15 C 0.071 3.929 16 C 0.534 3.466 17 O -0.557 6.557 18 C -0.125 4.125 19 S -0.144 6.144 20 C -0.547 4.547 21 H 0.079 0.921 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.402 0.598 34 H 0.417 0.583 35 H 0.413 0.587 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.382 -11.048 22.328 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.105 0.895 4 C -0.010 4.010 5 N -0.366 5.366 6 C 0.350 3.650 7 O -0.427 6.427 8 C -0.222 4.222 9 C 0.343 3.657 10 N -0.390 5.390 11 O -0.449 6.449 12 C -0.138 4.138 13 C -0.180 4.180 14 N -0.338 5.338 15 C -0.071 4.071 16 C 0.322 3.678 17 O -0.435 6.435 18 C -0.276 4.276 19 S 0.083 5.917 20 C -0.694 4.694 21 H 0.097 0.903 22 C -0.189 4.189 23 N -0.546 5.546 24 Si 0.818 3.182 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.200 1.200 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.236 0.764 34 H 0.249 0.751 35 H 0.245 0.755 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.978 -9.234 22.617 25.700 hybrid contribution 0.295 -1.780 -1.666 2.456 sum -7.683 -11.014 20.951 24.885 Atomic orbital electron populations 1.22004 0.91078 1.04085 1.03514 1.21447 0.96770 0.97292 0.82499 0.89524 1.21911 0.78742 1.02343 0.98030 1.46056 1.08639 1.58585 1.23322 1.19030 0.86637 0.77064 0.82306 1.90691 1.69655 1.51698 1.30629 1.21429 0.92539 0.99516 1.08720 1.19205 0.77899 0.84596 0.84050 1.43601 1.64183 1.06836 1.24352 1.90845 1.42132 1.86397 1.25534 1.23207 0.99226 1.00405 0.90978 1.23164 1.00320 0.93232 1.01251 1.47883 1.50300 1.13547 1.22073 1.22010 1.01889 0.79622 1.03590 1.20048 0.77705 0.86230 0.83825 1.90688 1.58245 1.18116 1.76482 1.23366 1.03566 1.03015 0.97668 1.85466 1.63377 1.19087 1.23744 1.23211 1.37567 0.99992 1.08671 0.90294 1.26080 0.94721 0.97154 1.00965 1.70179 1.34036 1.16535 1.33872 0.84950 0.78102 0.78238 0.76942 1.18185 1.19630 1.20004 0.90085 0.92671 0.89072 0.88876 0.89478 0.76414 0.75148 0.75471 0.85809 0.85622 0.87732 0.86790 0.90480 0.91426 0.88836 0.88401 0.87666 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.19 71.98 0.66 -1.39 16 2 C 0.12 2.46 2.80 44.99 0.13 2.58 16 3 H 0.09 2.21 6.90 -2.39 -0.02 2.19 16 4 C 0.11 1.98 4.92 86.38 0.43 2.40 16 5 N -0.72 -15.91 5.39 -463.08 -2.49 -18.40 16 6 C 0.56 12.61 6.97 87.65 0.61 13.23 16 7 O -0.55 -13.55 17.02 -3.03 -0.05 -13.60 16 8 C -0.22 -4.53 2.25 -53.67 -0.12 -4.65 16 9 C 0.56 13.41 7.34 87.66 0.64 14.06 16 10 N -0.83 -12.58 8.87 -173.53 -1.54 -14.12 16 11 O -0.57 -19.63 17.55 -3.05 -0.05 -19.68 16 12 C -0.10 -1.51 9.87 30.59 0.30 -1.21 16 13 C -0.14 -2.88 9.76 30.59 0.30 -2.58 16 14 N -0.60 -14.77 2.24 -822.59 -1.85 -16.61 16 15 C 0.07 1.25 9.30 127.77 1.19 2.44 16 16 C 0.53 19.39 7.40 87.65 0.65 20.04 16 17 O -0.56 -24.72 15.19 -3.04 -0.05 -24.77 16 18 C -0.13 -5.10 4.71 71.23 0.34 -4.76 16 19 S -0.14 -8.10 20.57 -56.49 -1.16 -9.26 16 20 C -0.55 -31.90 9.50 67.95 0.65 -31.25 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.02 0.91 5.49 84.86 0.47 1.37 16 23 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 24 Si 1.00 44.51 29.55 68.60 2.03 46.54 16 25 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 H 0.08 0.83 7.67 -2.39 -0.02 0.81 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.29 6.88 -2.39 -0.02 1.28 16 33 H 0.40 10.79 7.87 -92.71 -0.73 10.06 16 34 H 0.42 4.43 8.83 -92.71 -0.82 3.61 16 35 H 0.41 5.33 8.93 -92.71 -0.83 4.50 16 36 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.10 2.41 8.00 -2.39 -0.02 2.39 16 39 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.35 6.44 -2.39 -0.02 1.33 16 42 H 0.09 1.19 6.53 -2.38 -0.02 1.18 16 43 H 0.10 3.81 7.40 -2.39 -0.02 3.79 16 44 H 0.11 3.91 8.11 -2.40 -0.02 3.89 16 45 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -84.52 397.09 0.03 -84.49 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -1.32 Total: 31.40 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.23 Total: 10.28 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -5.59 Total: -105.39 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -0.15 Total: -58.05 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -84.52 0.03 -84.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280532391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.290 kcal (2) G-P(sol) polarization free energy of solvation -84.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds