Wall clock time and date at job start Wed Apr 1 2020 01:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21346 * 120.00008 * 359.97438 * 5 4 2 7 7 C 1.49452 * 120.00155 * 179.97438 * 5 4 2 8 8 N 1.34772 * 120.00278 * 179.97438 * 7 5 4 9 9 O 1.21353 * 120.00157 * 359.97438 * 7 5 4 10 10 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 11 11 C 1.53042 * 109.46398 * 180.02562 * 10 2 1 12 12 C 1.53198 * 109.31465 * 178.60163 * 11 10 2 13 13 N 1.46935 * 108.76062 * 54.65546 * 12 11 10 14 14 C 1.34781 * 120.62616 * 126.40982 * 13 12 11 15 15 O 1.21277 * 119.99539 * 179.97438 * 14 13 12 16 16 C 1.50704 * 119.99936 * 359.97292 * 14 13 12 17 17 S 1.81004 * 109.46746 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99880 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00207 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00196 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00186 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99508 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47314 * 90.00120 * 22 20 18 24 24 H 1.48504 * 109.46881 * 210.00114 * 22 20 18 25 25 H 1.48495 * 109.47187 * 329.99692 * 22 20 18 26 26 C 1.46925 * 118.74051 * 306.37966 * 13 12 11 27 27 C 1.53049 * 109.46109 * 59.97287 * 10 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 32 32 H 0.97006 * 119.99579 * 0.02562 * 8 7 5 33 33 H 0.96997 * 120.00399 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46383 * 300.00050 * 10 2 1 35 35 H 1.08999 * 109.49617 * 298.56655 * 11 10 2 36 36 H 1.08997 * 109.50004 * 58.66098 * 11 10 2 37 37 H 1.08993 * 109.59764 * 294.87180 * 12 11 10 38 38 H 1.08991 * 109.70129 * 174.50330 * 12 11 10 39 39 H 1.08994 * 109.46980 * 299.99995 * 16 14 13 40 40 H 1.08997 * 109.47172 * 60.00641 * 16 14 13 41 41 H 0.97006 * 120.00090 * 179.97438 * 21 20 18 42 42 H 1.08995 * 109.58787 * 293.82564 * 26 13 12 43 43 H 1.08998 * 109.58311 * 173.40225 * 26 13 12 44 44 H 1.08997 * 109.49255 * 301.34180 * 27 10 2 45 45 H 1.09004 * 109.49634 * 61.43521 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8588 1.1593 2.4116 7 6 2.6446 -0.7228 3.5776 8 7 2.7738 -0.0504 4.7384 9 8 2.9324 -1.9004 3.5234 10 6 2.0400 -0.7212 -1.2491 11 6 3.5705 -0.7217 -1.2485 12 6 4.0774 -1.4749 -2.4825 13 7 3.4748 -0.8769 -3.6818 14 6 4.2484 -0.4582 -4.7030 15 8 3.7388 0.0332 -5.6877 16 6 5.7464 -0.6008 -4.6211 17 16 6.4977 0.0482 -6.1346 18 6 8.1995 -0.2368 -5.7779 19 1 8.4862 -0.6909 -4.8409 20 6 9.1718 0.1234 -6.7006 21 7 10.4431 -0.0891 -6.4339 22 14 8.6760 0.9096 -8.3210 23 1 8.6331 2.3854 -8.1625 24 1 9.6669 0.5528 -9.3679 25 1 7.3340 0.4154 -8.7207 26 6 2.0129 -0.7448 -3.7469 27 6 1.5292 0.0000 -2.4987 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6317 1.1527 32 1 2.5434 0.8909 4.7819 33 1 3.0971 -0.5076 5.5304 34 1 1.6767 -1.7489 -1.2490 35 1 3.9345 0.3054 -1.2740 36 1 3.9338 -1.2146 -0.3469 37 1 3.7905 -2.5241 -2.4138 38 1 5.1629 -1.3959 -2.5409 39 1 6.1182 -0.0415 -3.7626 40 1 6.0056 -1.6535 -4.5090 41 1 11.1226 0.1623 -7.0790 42 1 1.5577 -1.7345 -3.7813 43 1 1.7363 -0.1819 -4.6384 44 1 0.4395 0.0206 -2.4868 45 1 1.9128 1.0202 -2.5122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281334772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:00 Heat of formation + Delta-G solvation = -116.629749 kcal Electronic energy + Delta-G solvation = -27539.815412 eV Core-core repulsion = 23490.145000 eV Total energy + Delta-G solvation = -4049.670412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14970 -40.14769 -38.99429 -37.90498 -35.88549 -34.22815 -33.08293 -32.44343 -31.54562 -30.67259 -28.84314 -26.24906 -25.64529 -25.15761 -23.30502 -22.25171 -20.99811 -20.72809 -19.34606 -18.92898 -17.74095 -17.66153 -16.86937 -16.59925 -16.28766 -15.98068 -15.67751 -15.41893 -14.96205 -14.70440 -14.63764 -14.41440 -14.07695 -14.03719 -13.81511 -13.58784 -13.14933 -12.92289 -12.82041 -12.76931 -12.36374 -12.20435 -12.00190 -11.90083 -11.49313 -11.26778 -11.07355 -11.01211 -10.89244 -10.87686 -10.58509 -10.40280 -10.12669 -9.86169 -9.68515 -9.47506 -9.00901 -8.62916 -8.49603 -6.92640 -6.29348 -4.01164 0.95761 2.01741 2.70197 2.76030 2.91777 3.18532 3.32962 3.38401 3.50235 3.58389 4.07136 4.14393 4.31991 4.32491 4.40129 4.65015 4.79465 4.86067 4.91829 4.98338 5.07377 5.09676 5.10848 5.22473 5.31108 5.39930 5.46493 5.49983 5.57593 5.60689 5.73758 5.77023 5.80598 5.84712 5.86850 5.97166 5.98216 6.07127 6.40690 6.54798 6.82725 7.32194 7.44221 7.54207 7.93633 8.40884 8.42563 9.16872 10.79853 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.002244 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.138755 B =12475.365277 C =13653.236269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 H 0.095 0.905 4 N -0.692 5.692 5 C 0.507 3.493 6 O -0.519 6.519 7 C 0.513 3.487 8 N -0.822 5.822 9 O -0.521 6.521 10 C -0.094 4.094 11 C -0.132 4.132 12 C 0.108 3.892 13 N -0.619 5.619 14 C 0.534 3.466 15 O -0.519 6.519 16 C -0.122 4.122 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.114 3.886 27 C -0.127 4.127 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.413 0.587 32 H 0.414 0.586 33 H 0.411 0.589 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.234 -2.374 20.959 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 H 0.113 0.887 4 N -0.345 5.345 5 C 0.287 3.713 6 O -0.394 6.394 7 C 0.291 3.709 8 N -0.389 5.389 9 O -0.396 6.396 10 C -0.113 4.113 11 C -0.171 4.171 12 C -0.016 4.016 13 N -0.355 5.355 14 C 0.322 3.678 15 O -0.394 6.394 16 C -0.272 4.272 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.009 4.009 27 C -0.166 4.166 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.249 0.751 32 H 0.245 0.755 33 H 0.244 0.756 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.861 -1.538 19.235 29.160 hybrid contribution 0.919 -0.456 1.031 1.454 sum -20.942 -1.994 20.266 29.211 Atomic orbital electron populations 1.22244 0.94539 1.02586 1.03059 1.21195 0.94440 0.97715 0.82633 0.88699 1.45889 1.64766 1.14985 1.08838 1.20043 0.79459 0.87038 0.84778 1.90786 1.48680 1.15192 1.84770 1.20172 0.78626 0.86844 0.85213 1.43539 1.67819 1.16081 1.11418 1.90837 1.48397 1.15367 1.85036 1.21457 0.96041 1.00311 0.93514 1.22009 0.94716 1.02222 0.98131 1.21728 0.99377 0.96681 0.83793 1.48083 1.06457 1.62913 1.18030 1.20298 0.88774 0.76736 0.82004 1.90685 1.74862 1.43009 1.30853 1.23311 0.93390 1.05455 1.05058 1.84794 1.05119 1.81454 1.20317 1.22303 0.88541 1.47670 1.08304 0.89409 1.24714 0.94042 0.94292 0.98277 1.69938 0.99609 1.45903 1.36236 0.86734 0.80868 0.80858 0.83383 1.19217 1.19944 1.15924 1.21505 0.80001 1.00445 0.98922 1.22005 1.01110 1.00161 0.93305 0.92096 0.90633 0.92045 0.75085 0.75506 0.75606 0.90017 0.90886 0.90553 0.91259 0.88971 0.88595 0.88530 0.91939 0.91718 0.88677 0.90105 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.13 37.16 0.34 -0.64 16 2 C 0.14 0.96 2.16 -67.94 -0.15 0.82 16 3 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 4 N -0.69 -4.72 4.36 -54.24 -0.24 -4.96 16 5 C 0.51 4.22 7.85 -11.58 -0.09 4.13 16 6 O -0.52 -5.40 16.14 5.50 0.09 -5.31 16 7 C 0.51 3.99 8.16 -11.59 -0.09 3.90 16 8 N -0.82 -3.74 8.87 30.90 0.27 -3.47 16 9 O -0.52 -5.37 17.31 5.49 0.10 -5.27 16 10 C -0.09 -0.61 1.79 -90.58 -0.16 -0.77 16 11 C -0.13 -1.05 5.22 -26.61 -0.14 -1.18 16 12 C 0.11 1.04 6.34 -3.70 -0.02 1.02 16 13 N -0.62 -7.88 2.97 -172.77 -0.51 -8.39 16 14 C 0.53 9.48 7.72 -10.98 -0.08 9.39 16 15 O -0.52 -11.11 15.27 5.56 0.08 -11.02 16 16 C -0.12 -2.35 4.50 36.01 0.16 -2.19 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 18 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.55 13.97 55.49 0.78 -25.77 16 22 Si 0.86 21.80 27.74 -169.99 -4.71 17.09 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 C 0.11 1.17 6.43 -3.71 -0.02 1.15 16 27 C -0.13 -0.96 5.04 -26.61 -0.13 -1.09 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.39 6.40 -51.93 -0.33 0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.41 2.42 7.86 -40.82 -0.32 2.10 16 32 H 0.41 1.39 8.30 -40.82 -0.34 1.05 16 33 H 0.41 1.13 8.93 -40.82 -0.36 0.76 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.52 7.41 -51.93 -0.38 0.14 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 39 H 0.10 1.73 7.69 -51.92 -0.40 1.33 16 40 H 0.10 1.74 7.94 -51.92 -0.41 1.33 16 41 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 44 H 0.08 0.46 6.36 -51.93 -0.33 0.13 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -36.64 380.76 -7.07 -43.71 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.48 Total: 0.70 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.18 Total: 2.58 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.30 Total: -42.59 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.27 Total: -21.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.64 -7.07 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281334772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.918 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds