Wall clock time and date at job start Wed Apr 1 2020 02:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47444 * 2 1 4 4 C 1.34773 * 120.00372 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00021 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99858 * 180.02562 * 4 3 2 7 7 C 1.50706 * 109.46818 * 179.97438 * 6 4 3 8 8 O 1.21286 * 120.00190 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99992 * 179.97438 * 7 6 4 10 10 C 1.47432 * 125.64737 * 0.04223 * 9 7 6 11 11 C 1.54914 * 104.83170 * 204.09316 * 10 9 7 12 12 C 1.55160 * 101.58029 * 322.99062 * 11 10 9 13 13 H 1.09004 * 110.87246 * 277.06711 * 12 11 10 14 14 N 1.46498 * 110.72044 * 153.86492 * 12 11 10 15 15 C 1.34777 * 119.99828 * 91.19909 * 14 12 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47098 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47081 * 120.00118 * 23 21 19 26 26 H 1.48496 * 109.47496 * 240.00528 * 23 21 19 27 27 C 1.47020 * 125.64987 * 180.02562 * 9 7 6 28 28 H 1.09000 * 109.46974 * 59.99955 * 1 2 3 29 29 H 1.09007 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47152 * 299.99634 * 1 2 3 31 31 H 1.09003 * 109.47435 * 239.99841 * 2 1 3 32 32 H 1.08998 * 109.47138 * 120.00559 * 2 1 3 33 33 H 0.97006 * 119.99697 * 0.02562 * 3 2 1 34 34 H 1.08992 * 109.47565 * 60.00329 * 6 4 3 35 35 H 1.09000 * 109.47152 * 299.99755 * 6 4 3 36 36 H 1.08995 * 110.36653 * 322.93163 * 10 9 7 37 37 H 1.09000 * 110.36673 * 85.14612 * 10 9 7 38 38 H 1.08996 * 111.00179 * 204.91848 * 11 10 9 39 39 H 1.08994 * 111.00201 * 81.06313 * 11 10 9 40 40 H 0.97001 * 120.00384 * 271.48355 * 14 12 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.88623 * 59.55896 * 27 9 7 45 45 H 1.09003 * 110.01030 * 298.46107 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8457 3.0483 0.0011 7 6 5.3527 3.0483 0.0023 8 8 5.9592 1.9979 0.0021 9 7 6.0266 4.2154 0.0024 10 6 5.4187 5.5586 0.0024 11 6 6.5007 6.4836 -0.6087 12 6 7.8007 5.8715 -0.0231 13 1 7.9863 6.2448 0.9841 14 7 8.9438 6.1502 -0.8959 15 6 9.6879 7.2566 -0.6992 16 8 9.4143 8.0188 0.2037 17 6 10.8600 7.5466 -1.6009 18 16 11.6513 9.0903 -1.0842 19 6 12.9488 9.1817 -2.2728 20 1 13.0525 8.4085 -3.0197 21 6 13.8371 10.2480 -2.2499 22 7 13.7105 11.1907 -1.3399 23 14 15.2131 10.3446 -3.5096 24 1 15.1381 9.1703 -4.4155 25 1 15.0708 11.5916 -4.3034 26 1 16.5238 10.3489 -2.8116 27 6 7.4897 4.3601 0.0029 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3880 2.1185 0.0004 34 1 3.4821 3.5619 0.8911 35 1 3.4827 3.5624 -0.8889 36 1 4.5196 5.5680 -0.6136 37 1 5.1834 5.8685 1.0206 38 1 6.3687 7.5128 -0.2750 39 1 6.4965 6.4237 -1.6970 40 1 9.1626 5.5407 -1.6180 41 1 11.5794 6.7303 -1.5355 42 1 10.5121 7.6427 -2.6294 43 1 14.3315 11.9355 -1.3237 44 1 7.9101 3.8798 -0.8805 45 1 7.9086 3.9112 0.9036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284007642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:23 Heat of formation + Delta-G solvation = -103.479036 kcal Electronic energy + Delta-G solvation = -26351.414691 eV Core-core repulsion = 22302.314537 eV Total energy + Delta-G solvation = -4049.100154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82722 -39.86689 -38.93637 -37.37776 -35.59672 -34.20875 -32.44762 -32.19868 -31.10583 -30.06383 -29.52763 -27.85177 -25.50458 -24.11608 -23.26775 -21.75271 -21.11079 -20.52917 -19.56418 -17.96350 -17.87454 -17.09347 -16.90285 -16.43817 -16.29799 -15.98365 -15.54696 -15.34793 -14.94550 -14.82176 -14.71911 -14.08404 -13.92826 -13.89765 -13.61652 -13.26819 -13.13849 -12.93138 -12.75488 -12.63796 -12.43804 -12.36858 -12.35172 -12.03423 -11.93402 -11.67030 -11.17870 -11.08159 -11.03777 -10.77254 -10.47370 -9.83143 -9.73513 -9.50671 -9.49569 -9.11191 -9.06226 -8.91782 -8.26568 -6.52570 -6.23915 -3.94544 2.22664 2.25683 2.42388 2.84990 2.98544 3.06661 3.20591 3.27538 3.32130 3.66477 3.92142 4.17931 4.18867 4.25826 4.43232 4.54275 4.55390 4.65295 4.72857 4.80578 4.81686 4.88671 4.94687 5.11546 5.11725 5.15720 5.29482 5.38161 5.44763 5.50342 5.52674 5.60786 5.73539 5.83584 5.85712 5.95202 5.97642 6.11137 6.51938 7.00271 7.14137 7.57866 7.59876 7.80505 7.97246 8.33622 8.51321 9.21931 10.83603 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.041150 B = 0.001507 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.271137 B =18573.503014 C =18874.571406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.737 5.737 4 C 0.510 3.490 5 O -0.492 6.492 6 C -0.160 4.160 7 C 0.528 3.472 8 O -0.493 6.493 9 N -0.622 5.622 10 C 0.098 3.902 11 C -0.146 4.146 12 C 0.137 3.863 13 H 0.108 0.892 14 N -0.731 5.731 15 C 0.536 3.464 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.105 3.895 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.400 0.600 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.268 0.732 44 H 0.074 0.926 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.573 -16.894 1.587 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.393 5.393 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.203 4.203 7 C 0.314 3.686 8 O -0.365 6.365 9 N -0.359 5.359 10 C -0.025 4.025 11 C -0.185 4.185 12 C 0.031 3.969 13 H 0.126 0.874 14 N -0.385 5.385 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.018 4.018 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.052 -16.841 3.180 32.874 hybrid contribution 0.861 -0.539 -2.226 2.447 sum -27.191 -17.381 0.954 32.286 Atomic orbital electron populations 1.22004 0.94350 1.03351 1.02517 1.21281 0.94175 0.82853 1.02557 1.46035 1.06857 1.09010 1.77363 1.20011 0.82366 0.90788 0.77441 1.90885 1.54401 1.45435 1.45650 1.21557 0.94885 0.97171 1.06684 1.19581 0.88784 0.82490 0.77703 1.90890 1.69247 1.29652 1.46717 1.48416 1.07015 1.05780 1.74692 1.22410 0.97046 0.81558 1.01469 1.23253 0.93749 1.00007 1.01534 1.21841 0.85861 0.92866 0.96361 0.87380 1.45971 1.30874 1.26581 1.35086 1.20340 0.82770 0.79935 0.84708 1.90703 1.69702 1.46571 1.31870 1.23541 0.98075 1.07194 1.01678 1.85379 1.34040 1.20142 1.43735 1.22912 1.15627 1.12045 1.17792 0.90845 1.24988 0.97610 0.94651 0.96278 1.70023 1.36659 1.10678 1.32939 0.86119 0.80778 0.78200 0.80417 1.19601 1.20566 1.20546 1.22070 0.80726 0.95813 1.03233 0.91939 0.90732 0.91932 0.91483 0.91481 0.76712 0.86010 0.86052 0.90268 0.90634 0.88775 0.89996 0.76492 0.89073 0.89119 0.92218 0.90762 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.40 10.03 37.15 0.37 -0.03 16 2 C 0.11 0.62 6.39 -4.05 -0.03 0.59 16 3 N -0.74 -3.88 5.56 -60.30 -0.33 -4.22 16 4 C 0.51 4.59 7.82 -10.98 -0.09 4.50 16 5 O -0.49 -7.29 14.18 -18.96 -0.27 -7.56 16 6 C -0.16 -0.95 5.19 -29.03 -0.15 -1.10 16 7 C 0.53 5.63 7.84 -10.98 -0.09 5.54 16 8 O -0.49 -7.91 14.51 -18.96 -0.28 -8.18 16 9 N -0.62 -5.51 3.33 -170.51 -0.57 -6.07 16 10 C 0.10 0.58 6.69 -2.52 -0.02 0.56 16 11 C -0.15 -1.20 6.77 -24.58 -0.17 -1.37 16 12 C 0.14 1.43 3.32 -66.09 -0.22 1.21 16 13 H 0.11 1.29 7.55 -51.93 -0.39 0.90 16 14 N -0.73 -8.90 5.18 -52.03 -0.27 -9.17 16 15 C 0.54 9.32 7.85 -10.98 -0.09 9.23 16 16 O -0.51 -10.89 15.51 5.55 0.09 -10.80 16 17 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 23 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.10 1.03 6.62 -3.06 -0.02 1.01 16 28 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.15 8.14 -51.92 -0.42 -0.27 16 30 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.40 0.72 8.47 -40.82 -0.35 0.37 16 34 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.12 0.34 7.85 -51.93 -0.41 -0.06 16 36 H 0.08 0.27 7.48 -51.93 -0.39 -0.12 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 3.89 8.37 -40.82 -0.34 3.55 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.07 0.74 7.71 -51.93 -0.40 0.34 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -40.52 393.84 -9.15 -49.68 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.89 Total: -1.51 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.07 Total: 4.63 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.44 Total: -44.61 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.46 Total: -26.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -40.52 -9.15 -49.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284007642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.800 kcal (2) G-P(sol) polarization free energy of solvation -40.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds