Wall clock time and date at job start Wed Apr 1 2020 02:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47444 * 2 1 4 4 C 1.34773 * 120.00372 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00021 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99858 * 180.02562 * 4 3 2 7 7 C 1.50706 * 109.46818 * 179.97438 * 6 4 3 8 8 O 1.21286 * 120.00190 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99992 * 179.97438 * 7 6 4 10 10 C 1.47432 * 125.64737 * 0.04223 * 9 7 6 11 11 C 1.54914 * 104.83170 * 204.09316 * 10 9 7 12 12 C 1.55160 * 101.58029 * 322.99062 * 11 10 9 13 13 H 1.09004 * 110.87246 * 277.06711 * 12 11 10 14 14 N 1.46498 * 110.72044 * 153.86492 * 12 11 10 15 15 C 1.34777 * 119.99828 * 91.19909 * 14 12 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47098 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47081 * 120.00118 * 23 21 19 26 26 H 1.48496 * 109.47496 * 240.00528 * 23 21 19 27 27 C 1.47020 * 125.64987 * 180.02562 * 9 7 6 28 28 H 1.09000 * 109.46974 * 59.99955 * 1 2 3 29 29 H 1.09007 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47152 * 299.99634 * 1 2 3 31 31 H 1.09003 * 109.47435 * 239.99841 * 2 1 3 32 32 H 1.08998 * 109.47138 * 120.00559 * 2 1 3 33 33 H 0.97006 * 119.99697 * 0.02562 * 3 2 1 34 34 H 1.08992 * 109.47565 * 60.00329 * 6 4 3 35 35 H 1.09000 * 109.47152 * 299.99755 * 6 4 3 36 36 H 1.08995 * 110.36653 * 322.93163 * 10 9 7 37 37 H 1.09000 * 110.36673 * 85.14612 * 10 9 7 38 38 H 1.08996 * 111.00179 * 204.91848 * 11 10 9 39 39 H 1.08994 * 111.00201 * 81.06313 * 11 10 9 40 40 H 0.97001 * 120.00384 * 271.48355 * 14 12 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.88623 * 59.55896 * 27 9 7 45 45 H 1.09003 * 110.01030 * 298.46107 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8457 3.0483 0.0011 7 6 5.3527 3.0483 0.0023 8 8 5.9592 1.9979 0.0021 9 7 6.0266 4.2154 0.0024 10 6 5.4187 5.5586 0.0024 11 6 6.5007 6.4836 -0.6087 12 6 7.8007 5.8715 -0.0231 13 1 7.9863 6.2448 0.9841 14 7 8.9438 6.1502 -0.8959 15 6 9.6879 7.2566 -0.6992 16 8 9.4143 8.0188 0.2037 17 6 10.8600 7.5466 -1.6009 18 16 11.6513 9.0903 -1.0842 19 6 12.9488 9.1817 -2.2728 20 1 13.0525 8.4085 -3.0197 21 6 13.8371 10.2480 -2.2499 22 7 13.7105 11.1907 -1.3399 23 14 15.2131 10.3446 -3.5096 24 1 15.1381 9.1703 -4.4155 25 1 15.0708 11.5916 -4.3034 26 1 16.5238 10.3489 -2.8116 27 6 7.4897 4.3601 0.0029 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3880 2.1185 0.0004 34 1 3.4821 3.5619 0.8911 35 1 3.4827 3.5624 -0.8889 36 1 4.5196 5.5680 -0.6136 37 1 5.1834 5.8685 1.0206 38 1 6.3687 7.5128 -0.2750 39 1 6.4965 6.4237 -1.6970 40 1 9.1626 5.5407 -1.6180 41 1 11.5794 6.7303 -1.5355 42 1 10.5121 7.6427 -2.6294 43 1 14.3315 11.9355 -1.3237 44 1 7.9101 3.8798 -0.8805 45 1 7.9086 3.9112 0.9036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284007642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:22 Heat of formation + Delta-G solvation = -135.201544 kcal Electronic energy + Delta-G solvation = -26352.790282 eV Core-core repulsion = 22302.314537 eV Total energy + Delta-G solvation = -4050.475745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59498 -40.83830 -39.93969 -38.30384 -36.19155 -35.31781 -34.57783 -32.90611 -31.95268 -30.67826 -30.54047 -28.81640 -27.63633 -24.78086 -23.72694 -22.62488 -21.81594 -21.70220 -20.25932 -19.84531 -18.57852 -18.14389 -17.67258 -17.39513 -17.01733 -16.87844 -16.83509 -16.43238 -16.34895 -15.97432 -15.78556 -15.23069 -14.79179 -14.71581 -14.56058 -14.49031 -14.30231 -13.87766 -13.62242 -13.43269 -13.24569 -13.15342 -13.00123 -12.92292 -12.87949 -12.67198 -12.66892 -12.54056 -12.32628 -11.91884 -11.70527 -11.21627 -11.15348 -10.97787 -10.54788 -10.26791 -10.16002 -10.06497 -9.70358 -8.65051 -8.34648 -6.11786 1.25398 1.41353 1.44500 1.55069 1.58541 1.59578 1.68773 1.70732 2.23599 2.28263 2.48150 2.99889 3.25191 3.32760 3.52371 3.62368 3.93232 3.95507 4.04055 4.18496 4.19333 4.21953 4.29936 4.32015 4.37111 4.39157 4.52975 4.53634 4.61940 4.76871 4.80445 4.96967 5.02945 5.07602 5.10868 5.23149 5.28818 5.43025 5.45717 5.50677 6.20563 6.40235 6.46937 6.61563 7.07435 7.14262 7.20928 7.37746 8.74747 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.041150 B = 0.001507 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.271137 B =18573.503014 C =18874.571406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.717 5.717 4 C 0.502 3.498 5 O -0.562 6.562 6 C -0.147 4.147 7 C 0.520 3.480 8 O -0.558 6.558 9 N -0.618 5.618 10 C 0.102 3.898 11 C -0.142 4.142 12 C 0.135 3.865 13 H 0.092 0.908 14 N -0.707 5.707 15 C 0.541 3.459 16 O -0.558 6.558 17 C -0.132 4.132 18 S -0.146 6.146 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.016 3.984 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.109 3.891 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.420 0.580 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.415 0.585 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.072 0.928 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.989 -16.891 0.081 35.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.373 5.373 4 C 0.287 3.713 5 O -0.439 6.439 6 C -0.189 4.189 7 C 0.309 3.691 8 O -0.435 6.435 9 N -0.353 5.353 10 C -0.020 4.020 11 C -0.181 4.181 12 C 0.030 3.970 13 H 0.110 0.890 14 N -0.361 5.361 15 C 0.327 3.673 16 O -0.435 6.435 17 C -0.284 4.284 18 S 0.082 5.918 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.015 4.015 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.258 0.742 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.253 0.747 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -30.564 -16.821 1.655 34.927 hybrid contribution 1.507 -0.626 -1.728 2.377 sum -29.058 -17.447 -0.073 33.894 Atomic orbital electron populations 1.21940 0.91575 1.04049 1.03573 1.21308 0.96313 0.82790 1.00934 1.45908 1.06221 1.09729 1.75436 1.20653 0.82825 0.91527 0.76247 1.90870 1.56291 1.47641 1.49086 1.21626 0.91039 0.95684 1.10504 1.20443 0.90703 0.81699 0.76287 1.90875 1.70853 1.32007 1.49744 1.48480 1.06431 1.06765 1.73664 1.22641 0.97244 0.78877 1.03219 1.23216 0.92841 1.00135 1.01881 1.21919 0.86171 0.93529 0.95431 0.89027 1.45700 1.30360 1.24873 1.35180 1.19962 0.82645 0.80823 0.83844 1.90694 1.70815 1.48451 1.33566 1.23390 0.98752 1.03288 1.02932 1.85510 1.35400 1.25707 1.45233 1.23247 1.15913 1.12465 1.17874 0.90039 1.26077 1.00363 0.94077 0.98407 1.70176 1.37981 1.11508 1.35034 0.84940 0.76929 0.78715 0.77585 1.18181 1.19846 1.20036 1.21897 0.82120 0.94940 1.02587 0.90798 0.90315 0.90812 0.93219 0.93255 0.74230 0.81958 0.81798 0.86216 0.88919 0.89270 0.89415 0.74729 0.87472 0.87064 0.91983 0.90956 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 10.03 71.98 0.72 0.29 16 2 C 0.11 1.13 6.39 86.38 0.55 1.68 16 3 N -0.72 -6.09 5.56 -463.08 -2.57 -8.66 16 4 C 0.50 8.39 7.82 87.66 0.69 9.07 16 5 O -0.56 -17.33 14.18 20.42 0.29 -17.04 16 6 C -0.15 -1.21 5.19 29.11 0.15 -1.06 16 7 C 0.52 10.27 7.84 87.66 0.69 10.96 16 8 O -0.56 -18.39 14.51 20.39 0.30 -18.09 16 9 N -0.62 -9.53 3.33 -811.77 -2.70 -12.23 16 10 C 0.10 0.79 6.69 86.86 0.58 1.37 16 11 C -0.14 -1.95 6.77 31.99 0.22 -1.74 16 12 C 0.14 2.66 3.32 46.18 0.15 2.81 16 13 H 0.09 2.18 7.55 -2.38 -0.02 2.16 16 14 N -0.71 -16.35 5.18 -436.90 -2.26 -18.61 16 15 C 0.54 18.59 7.85 87.66 0.69 19.28 16 16 O -0.56 -23.97 15.51 -3.04 -0.05 -24.02 16 17 C -0.13 -5.04 6.16 71.24 0.44 -4.61 16 18 S -0.15 -7.90 20.57 -56.49 -1.16 -9.06 16 19 C -0.55 -30.90 9.50 67.96 0.65 -30.26 16 20 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 21 C 0.02 0.88 5.49 84.86 0.47 1.35 16 22 N -0.91 -55.33 13.22 21.65 0.29 -55.05 16 23 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 C 0.11 2.05 6.62 86.73 0.57 2.63 16 28 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.42 -0.06 8.47 -92.70 -0.79 -0.85 16 34 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.16 -0.03 7.85 -2.39 -0.02 -0.04 16 36 H 0.12 0.06 7.48 -2.39 -0.02 0.04 16 37 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.42 7.28 8.37 -92.71 -0.78 6.51 16 41 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 42 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 43 H 0.27 15.25 8.31 -92.72 -0.77 14.48 16 44 H 0.07 1.40 7.71 -2.39 -0.02 1.38 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -95.90 393.84 0.18 -95.73 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -0.54 Total: 9.87 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.56 Total: 11.79 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -7.25 Total: -94.54 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: 0.54 Total: -59.15 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -95.90 0.18 -95.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284007642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.474 kcal (2) G-P(sol) polarization free energy of solvation -95.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds