Wall clock time and date at job start Wed Apr 1 2020 02:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46666 * 2 1 4 4 C 1.34775 * 119.99852 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00122 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47202 * 180.02562 * 6 4 3 8 8 O 1.21281 * 119.99850 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99877 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99438 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.91408 * 336.25112 * 10 9 7 12 12 C 1.53780 * 113.61286 * 107.50533 * 10 9 7 13 13 C 1.53783 * 87.08464 * 139.97539 * 12 10 9 14 14 H 1.09002 * 113.68832 * 89.12308 * 13 12 10 15 15 N 1.46499 * 113.61676 * 220.01825 * 13 12 10 16 16 C 1.34777 * 119.99665 * 252.77445 * 15 13 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 13 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 13 19 19 S 1.81005 * 109.46906 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99828 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00390 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99869 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00444 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00089 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47406 * 89.99536 * 24 22 20 26 26 H 1.48502 * 109.46978 * 209.99777 * 24 22 20 27 27 H 1.48504 * 109.47081 * 329.99606 * 24 22 20 28 28 C 1.53783 * 113.60878 * 204.99559 * 10 9 7 29 29 H 1.09004 * 109.47160 * 299.99628 * 1 2 3 30 30 H 1.09001 * 109.47049 * 60.00142 * 1 2 3 31 31 H 1.09002 * 109.46673 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47270 * 240.00622 * 2 1 3 33 33 H 1.08996 * 109.47497 * 119.99714 * 2 1 3 34 34 H 0.97001 * 120.00057 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.47564 * 60.00352 * 6 4 3 36 36 H 1.08999 * 109.47607 * 300.00347 * 6 4 3 37 37 H 0.96999 * 119.99846 * 359.97438 * 9 7 6 38 38 H 1.08998 * 113.61772 * 25.42693 * 12 10 9 39 39 H 1.09001 * 113.61751 * 254.52751 * 12 10 9 40 40 H 0.97001 * 119.99790 * 72.49158 * 15 13 12 41 41 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 42 42 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 43 43 H 0.96995 * 120.00766 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.60825 * 105.47645 * 28 10 9 45 45 H 1.08999 * 113.69620 * 334.58355 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6277 0.0005 5 8 4.1315 0.7059 0.0005 6 6 3.8455 3.0484 0.0011 7 6 5.3526 3.0485 0.0010 8 8 5.9590 1.9982 0.0009 9 7 6.0264 4.2159 0.0020 10 6 7.4914 4.2158 0.0024 11 1 7.9156 3.2967 0.4062 12 6 8.1078 4.6406 -1.3409 13 6 9.1538 5.4187 -0.5254 14 1 10.0332 4.8295 -0.2652 15 7 9.4926 6.7237 -1.0984 16 6 10.6858 6.9072 -1.6977 17 8 11.4810 5.9935 -1.7581 18 6 11.0318 8.2479 -2.2926 19 16 12.6889 8.1767 -3.0174 20 6 12.8297 9.8259 -3.6215 21 1 12.0164 10.5229 -3.4833 22 6 13.9858 10.2293 -4.2750 23 7 14.0909 11.4611 -4.7268 24 14 15.3923 9.0235 -4.5148 25 1 15.2134 8.3036 -5.8011 26 1 16.6800 9.7630 -4.5363 27 1 15.4017 8.0455 -3.3974 28 6 8.1071 5.4926 0.5989 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3879 2.1186 0.0004 35 1 3.4820 3.5620 0.8911 36 1 3.4825 3.5626 -0.8888 37 1 5.5413 5.0558 0.0024 38 1 7.4565 5.2789 -1.9378 39 1 8.5270 3.8112 -1.9107 40 1 8.8566 7.4545 -1.0501 41 1 10.3069 8.4999 -3.0667 42 1 11.0094 9.0085 -1.5123 43 1 14.8987 11.7430 -5.1839 44 1 8.5258 5.3510 1.5952 45 1 7.4565 6.3646 0.5332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284077701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:50 Heat of formation + Delta-G solvation = -92.328682 kcal Electronic energy + Delta-G solvation = -25903.958782 eV Core-core repulsion = 21855.342144 eV Total energy + Delta-G solvation = -4048.616638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85371 -40.08108 -39.02164 -37.87289 -35.65493 -34.28664 -32.87332 -32.44502 -31.82647 -29.99474 -29.17194 -26.04217 -25.64424 -24.62636 -23.41573 -21.58291 -20.80393 -20.44571 -20.20325 -17.89079 -17.80116 -17.31035 -16.79602 -16.50411 -16.41964 -16.15733 -15.49220 -15.25387 -15.17841 -14.97332 -14.85453 -14.20925 -14.03859 -13.82310 -13.65379 -13.30801 -13.06511 -12.95468 -12.84109 -12.80031 -12.54894 -12.39338 -12.08690 -11.95904 -11.60376 -11.49414 -11.26093 -11.11520 -11.00846 -10.60388 -10.50081 -9.86004 -9.73749 -9.53560 -9.53030 -9.35179 -9.01721 -8.93969 -8.50755 -6.92592 -6.29741 -4.01574 2.19507 2.36770 2.39586 2.75171 2.92356 3.03285 3.32388 3.36553 3.50829 3.66674 4.03477 4.13088 4.27806 4.32927 4.36978 4.50988 4.52713 4.62342 4.63403 4.69473 4.72642 4.74047 4.78922 5.09554 5.22174 5.27268 5.31116 5.35768 5.37161 5.47031 5.49653 5.58047 5.74259 5.81515 5.91036 5.94947 5.99313 6.21778 6.54062 6.98006 7.13968 7.58374 7.80581 7.93230 7.98575 8.40377 8.46914 9.16615 10.79470 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036407 B = 0.001419 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.890785 B =19724.560493 C =19799.335008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.509 3.491 5 O -0.491 6.491 6 C -0.166 4.166 7 C 0.511 3.489 8 O -0.492 6.492 9 N -0.722 5.722 10 C 0.127 3.873 11 H 0.120 0.880 12 C -0.165 4.165 13 C 0.130 3.870 14 H 0.119 0.881 15 N -0.725 5.725 16 C 0.531 3.469 17 O -0.517 6.517 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C -0.152 4.152 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.399 0.601 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.083 0.917 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.172 -14.747 13.127 36.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.393 5.393 4 C 0.293 3.707 5 O -0.363 6.363 6 C -0.209 4.209 7 C 0.295 3.705 8 O -0.364 6.364 9 N -0.375 5.375 10 C 0.022 3.978 11 H 0.137 0.863 12 C -0.205 4.205 13 C 0.023 3.977 14 H 0.137 0.863 15 N -0.378 5.378 16 C 0.317 3.683 17 O -0.391 6.391 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.191 4.191 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.665 -17.646 12.936 36.061 hybrid contribution -1.296 2.167 -0.245 2.537 sum -29.962 -15.479 12.692 36.033 Atomic orbital electron populations 1.22007 0.94358 1.03369 1.02493 1.21284 0.94174 0.82861 1.02571 1.46047 1.06887 1.08995 1.77377 1.20016 0.82353 0.90838 0.77483 1.90892 1.54379 1.45434 1.45591 1.21602 0.95358 0.97283 1.06678 1.19981 0.88957 0.84243 0.77317 1.90887 1.69268 1.30453 1.45763 1.45909 1.06845 1.08252 1.76455 1.22283 0.79089 0.99330 0.97117 0.86261 1.23999 0.98182 1.00896 0.97462 1.22161 0.96847 0.85496 0.93162 0.86286 1.45886 1.18390 1.13342 1.60187 1.20333 0.80885 0.89903 0.77145 1.90706 1.48490 1.43439 1.56487 1.23286 1.04138 0.96588 1.03527 1.84823 1.13666 1.19258 1.73765 1.22317 1.06819 0.94960 1.42881 0.89405 1.24703 0.97812 0.95064 0.93639 1.69932 1.28451 1.16547 1.36794 0.86741 0.81821 0.82130 0.81210 1.19195 1.19919 1.15903 1.23755 0.97928 0.97815 0.99625 0.91961 0.91934 0.90721 0.91459 0.91488 0.76752 0.86057 0.86026 0.76661 0.89340 0.90316 0.76631 0.88519 0.88443 0.91932 0.89850 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.36 10.03 37.16 0.37 0.02 16 2 C 0.11 0.58 6.39 -4.04 -0.03 0.56 16 3 N -0.74 -3.52 5.56 -60.30 -0.33 -3.85 16 4 C 0.51 4.23 7.82 -10.99 -0.09 4.14 16 5 O -0.49 -7.01 14.18 -18.96 -0.27 -7.28 16 6 C -0.17 -0.76 6.19 -29.04 -0.18 -0.94 16 7 C 0.51 4.58 7.82 -10.98 -0.09 4.50 16 8 O -0.49 -7.30 13.78 -18.96 -0.26 -7.56 16 9 N -0.72 -4.51 5.36 -53.02 -0.28 -4.79 16 10 C 0.13 1.03 4.24 -67.12 -0.28 0.75 16 11 H 0.12 1.21 7.47 -51.93 -0.39 0.82 16 12 C -0.17 -1.57 7.68 -25.92 -0.20 -1.77 16 13 C 0.13 1.33 4.24 -67.12 -0.28 1.05 16 14 H 0.12 1.48 7.47 -51.93 -0.39 1.09 16 15 N -0.73 -8.42 5.35 -53.01 -0.28 -8.71 16 16 C 0.53 9.11 7.85 -10.99 -0.09 9.02 16 17 O -0.52 -11.00 15.46 5.55 0.09 -10.91 16 18 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 19 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 20 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 24 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 C -0.15 -1.02 7.58 -25.92 -0.20 -1.21 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.40 0.50 8.47 -40.82 -0.35 0.16 16 35 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.12 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.40 1.10 8.73 -40.82 -0.36 0.75 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 3.37 8.73 -40.82 -0.36 3.01 16 41 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -41.39 395.43 -8.85 -50.24 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.90 Total: -0.96 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.62 Total: 2.06 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.13 Total: -43.05 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.44 Total: -25.75 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -41.39 -8.85 -50.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284077701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.090 kcal (2) G-P(sol) polarization free energy of solvation -41.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds