Wall clock time and date at job start Wed Apr 1 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46666 * 2 1 4 4 C 1.34775 * 119.99852 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00122 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47202 * 180.02562 * 6 4 3 8 8 O 1.21281 * 119.99850 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99877 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99438 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.91408 * 336.25112 * 10 9 7 12 12 C 1.53780 * 113.61286 * 107.50533 * 10 9 7 13 13 C 1.53783 * 87.08464 * 139.97539 * 12 10 9 14 14 H 1.09002 * 113.68832 * 89.12308 * 13 12 10 15 15 N 1.46499 * 113.61676 * 220.01825 * 13 12 10 16 16 C 1.34777 * 119.99665 * 252.77445 * 15 13 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 13 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 13 19 19 S 1.81005 * 109.46906 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99828 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00390 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99869 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00444 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00089 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47406 * 89.99536 * 24 22 20 26 26 H 1.48502 * 109.46978 * 209.99777 * 24 22 20 27 27 H 1.48504 * 109.47081 * 329.99606 * 24 22 20 28 28 C 1.53783 * 113.60878 * 204.99559 * 10 9 7 29 29 H 1.09004 * 109.47160 * 299.99628 * 1 2 3 30 30 H 1.09001 * 109.47049 * 60.00142 * 1 2 3 31 31 H 1.09002 * 109.46673 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47270 * 240.00622 * 2 1 3 33 33 H 1.08996 * 109.47497 * 119.99714 * 2 1 3 34 34 H 0.97001 * 120.00057 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.47564 * 60.00352 * 6 4 3 36 36 H 1.08999 * 109.47607 * 300.00347 * 6 4 3 37 37 H 0.96999 * 119.99846 * 359.97438 * 9 7 6 38 38 H 1.08998 * 113.61772 * 25.42693 * 12 10 9 39 39 H 1.09001 * 113.61751 * 254.52751 * 12 10 9 40 40 H 0.97001 * 119.99790 * 72.49158 * 15 13 12 41 41 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 42 42 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 43 43 H 0.96995 * 120.00766 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.60825 * 105.47645 * 28 10 9 45 45 H 1.08999 * 113.69620 * 334.58355 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6277 0.0005 5 8 4.1315 0.7059 0.0005 6 6 3.8455 3.0484 0.0011 7 6 5.3526 3.0485 0.0010 8 8 5.9590 1.9982 0.0009 9 7 6.0264 4.2159 0.0020 10 6 7.4914 4.2158 0.0024 11 1 7.9156 3.2967 0.4062 12 6 8.1078 4.6406 -1.3409 13 6 9.1538 5.4187 -0.5254 14 1 10.0332 4.8295 -0.2652 15 7 9.4926 6.7237 -1.0984 16 6 10.6858 6.9072 -1.6977 17 8 11.4810 5.9935 -1.7581 18 6 11.0318 8.2479 -2.2926 19 16 12.6889 8.1767 -3.0174 20 6 12.8297 9.8259 -3.6215 21 1 12.0164 10.5229 -3.4833 22 6 13.9858 10.2293 -4.2750 23 7 14.0909 11.4611 -4.7268 24 14 15.3923 9.0235 -4.5148 25 1 15.2134 8.3036 -5.8011 26 1 16.6800 9.7630 -4.5363 27 1 15.4017 8.0455 -3.3974 28 6 8.1071 5.4926 0.5989 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3879 2.1186 0.0004 35 1 3.4820 3.5620 0.8911 36 1 3.4825 3.5626 -0.8888 37 1 5.5413 5.0558 0.0024 38 1 7.4565 5.2789 -1.9378 39 1 8.5270 3.8112 -1.9107 40 1 8.8566 7.4545 -1.0501 41 1 10.3069 8.4999 -3.0667 42 1 11.0094 9.0085 -1.5123 43 1 14.8987 11.7430 -5.1839 44 1 8.5258 5.3510 1.5952 45 1 7.4565 6.3646 0.5332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284077701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:49 Heat of formation + Delta-G solvation = -126.561843 kcal Electronic energy + Delta-G solvation = -25905.443243 eV Core-core repulsion = 21855.342144 eV Total energy + Delta-G solvation = -4050.101100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57467 -40.95820 -39.95967 -38.80817 -36.20881 -35.22462 -34.66607 -33.81413 -32.35687 -30.81635 -30.14622 -27.85517 -26.73057 -25.41061 -23.87509 -22.29492 -21.73200 -21.35740 -20.93812 -19.81892 -18.44861 -18.08082 -17.75540 -17.48066 -17.09006 -17.02714 -16.75922 -16.47533 -16.26371 -15.98124 -15.80450 -15.49362 -14.95199 -14.81702 -14.74577 -14.41207 -14.32360 -13.99179 -13.47873 -13.42313 -13.34185 -13.26355 -13.02058 -12.91845 -12.75505 -12.67754 -12.33099 -12.29616 -12.27218 -11.93672 -11.85227 -11.17067 -11.16779 -10.95592 -10.51612 -10.47711 -10.13643 -10.06004 -9.90621 -8.98799 -8.51273 -6.21619 1.00180 1.31327 1.47305 1.55984 1.56384 1.64875 1.75518 1.87335 2.23949 2.28317 2.60314 2.75111 2.87361 3.40219 3.56302 3.59257 3.87235 3.90197 3.95165 4.03448 4.19896 4.21448 4.27183 4.44182 4.45614 4.49093 4.52668 4.63821 4.69994 4.73426 4.90736 4.97174 5.02509 5.06626 5.11010 5.27671 5.48599 5.51394 5.63246 5.71329 6.12024 6.51523 6.60118 6.66922 6.94596 7.24033 7.32079 7.45271 8.61005 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036407 B = 0.001419 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.890785 B =19724.560493 C =19799.335008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.719 5.719 4 C 0.499 3.501 5 O -0.563 6.563 6 C -0.151 4.151 7 C 0.502 3.498 8 O -0.561 6.561 9 N -0.701 5.701 10 C 0.129 3.871 11 H 0.091 0.909 12 C -0.162 4.162 13 C 0.116 3.884 14 H 0.091 0.909 15 N -0.695 5.695 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.110 4.110 19 S -0.183 6.183 20 C -0.527 4.527 21 H 0.065 0.935 22 C 0.048 3.952 23 N -0.917 5.917 24 Si 0.911 3.089 25 H -0.264 1.264 26 H -0.259 1.259 27 H -0.238 1.238 28 C -0.123 4.123 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.420 0.580 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.422 0.578 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.420 0.580 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.277 0.723 44 H 0.091 0.909 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.373 -13.336 14.209 39.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.374 5.374 4 C 0.284 3.716 5 O -0.440 6.440 6 C -0.193 4.193 7 C 0.288 3.712 8 O -0.438 6.438 9 N -0.355 5.355 10 C 0.023 3.977 11 H 0.109 0.891 12 C -0.202 4.202 13 C 0.011 3.989 14 H 0.110 0.890 15 N -0.349 5.349 16 C 0.320 3.680 17 O -0.444 6.444 18 C -0.261 4.261 19 S 0.044 5.956 20 C -0.675 4.675 21 H 0.083 0.917 22 C -0.157 4.157 23 N -0.555 5.555 24 Si 0.734 3.266 25 H -0.189 1.189 26 H -0.183 1.183 27 H -0.162 1.162 28 C -0.161 4.161 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.257 0.743 35 H 0.185 0.815 36 H 0.181 0.819 37 H 0.261 0.739 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.259 0.741 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -31.998 -16.129 14.041 38.486 hybrid contribution -0.496 1.719 -0.534 1.867 sum -32.494 -14.410 13.507 38.026 Atomic orbital electron populations 1.21940 0.91593 1.04022 1.03568 1.21296 0.96311 0.82947 1.00839 1.45931 1.06370 1.09604 1.75526 1.20790 0.82725 0.91866 0.76177 1.90877 1.56292 1.47791 1.49084 1.21655 0.91723 0.95289 1.10668 1.20813 0.90878 0.83652 0.75813 1.90880 1.70933 1.33018 1.48940 1.45696 1.05911 1.08796 1.75089 1.21996 0.80390 0.99105 0.96259 0.89060 1.23994 0.98163 1.00090 0.97966 1.22274 0.96896 0.84445 0.95331 0.89044 1.45605 1.16697 1.14585 1.57981 1.20054 0.82077 0.88515 0.77387 1.90701 1.50433 1.44550 1.58765 1.23277 0.99986 0.98489 1.04332 1.84812 1.19390 1.16910 1.74513 1.22460 1.06155 0.96226 1.42645 0.91704 1.25508 1.00147 0.96544 0.93521 1.70004 1.29549 1.18078 1.37827 0.85909 0.79593 0.80174 0.80959 1.18861 1.18325 1.16215 1.23642 0.96217 0.97985 0.98285 0.90717 0.90869 0.90384 0.93441 0.93246 0.74262 0.81532 0.81921 0.73931 0.87438 0.93242 0.74139 0.86653 0.86479 0.91387 0.89079 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 10.03 71.98 0.72 0.33 16 2 C 0.11 1.10 6.39 86.38 0.55 1.66 16 3 N -0.72 -5.63 5.56 -463.07 -2.57 -8.21 16 4 C 0.50 7.83 7.82 87.66 0.69 8.51 16 5 O -0.56 -17.04 14.18 20.41 0.29 -16.75 16 6 C -0.15 -0.86 6.19 29.10 0.18 -0.68 16 7 C 0.50 8.25 7.82 87.66 0.69 8.93 16 8 O -0.56 -17.40 13.78 20.41 0.28 -17.12 16 9 N -0.70 -6.65 5.36 -440.03 -2.36 -9.00 16 10 C 0.13 1.90 4.24 45.52 0.19 2.09 16 11 H 0.09 1.94 7.47 -2.39 -0.02 1.92 16 12 C -0.16 -2.88 7.68 31.12 0.24 -2.64 16 13 C 0.12 2.21 4.24 45.52 0.19 2.40 16 14 H 0.09 2.32 7.47 -2.39 -0.02 2.30 16 15 N -0.70 -14.27 5.35 -440.03 -2.36 -16.63 16 16 C 0.53 17.55 7.85 87.66 0.69 18.24 16 17 O -0.57 -24.17 15.46 -3.04 -0.05 -24.21 16 18 C -0.11 -3.95 6.16 71.24 0.44 -3.51 16 19 S -0.18 -9.17 18.55 -56.49 -1.05 -10.22 16 20 C -0.53 -30.37 10.04 67.95 0.68 -29.69 16 21 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 22 C 0.05 2.82 5.50 84.86 0.47 3.29 16 23 N -0.92 -55.45 13.97 21.65 0.30 -55.15 16 24 Si 0.91 45.10 27.74 68.60 1.90 47.00 16 25 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 28 C -0.12 -1.21 7.58 31.12 0.24 -0.98 16 29 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.42 -0.38 8.47 -92.71 -0.79 -1.16 16 35 H 0.17 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.16 -0.38 8.14 -2.39 -0.02 -0.39 16 37 H 0.42 0.13 8.73 -92.71 -0.81 -0.68 16 38 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.42 5.21 8.73 -92.71 -0.81 4.40 16 41 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.13 0.39 8.10 -2.39 -0.02 0.37 16 Total: -1.00 -98.55 395.43 -1.04 -99.59 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -1.40 Total: 2.74 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.96 Total: 7.96 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -6.98 Total: -88.99 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: 0.52 Total: -58.08 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.22 kcal Total: -98.55 -1.04 -99.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284077701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.971 kcal (2) G-P(sol) polarization free energy of solvation -98.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds