Wall clock time and date at job start Wed Apr 1 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 C 1.52995 * 109.47548 * 240.00082 * 2 1 3 5 5 N 1.46506 * 109.47313 * 184.99857 * 4 2 1 6 6 C 1.34769 * 120.00029 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00031 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.67361 * 300.49870 * 8 6 5 10 10 C 1.53348 * 109.67737 * 180.02562 * 8 6 5 11 11 C 1.52919 * 108.67637 * 172.73204 * 10 8 6 12 12 N 1.45754 * 110.48263 * 50.75682 * 11 10 8 13 13 C 1.33349 * 124.11059 * 340.89551 * 12 11 10 14 14 O 1.21284 * 118.25017 * 182.26867 * 13 12 11 15 15 C 1.50182 * 123.50586 * 2.27445 * 13 12 11 16 16 N 1.46500 * 109.47146 * 119.99512 * 2 1 3 17 17 C 1.34779 * 120.00169 * 275.00181 * 16 2 1 18 18 O 1.21282 * 119.99922 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00037 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.46881 * 180.02562 * 19 17 16 21 21 C 1.76206 * 99.99929 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99720 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99847 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00398 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99778 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47367 * 59.99618 * 25 23 21 27 27 H 1.48498 * 109.47311 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46831 * 299.99623 * 25 23 21 29 29 H 1.09006 * 109.46479 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47133 * 300.00242 * 1 2 3 31 31 H 1.09001 * 109.46947 * 60.00474 * 1 2 3 32 32 H 1.09003 * 109.47048 * 304.99616 * 4 2 1 33 33 H 1.09000 * 109.47483 * 64.99501 * 4 2 1 34 34 H 0.97006 * 119.99717 * 359.97438 * 5 4 2 35 35 H 1.08996 * 109.60191 * 292.49203 * 10 8 6 36 36 H 1.09006 * 109.60268 * 52.97719 * 10 8 6 37 37 H 1.09000 * 109.29521 * 171.06250 * 11 10 8 38 38 H 1.08990 * 109.30162 * 290.44366 * 11 10 8 39 39 H 0.97005 * 117.94165 * 160.92888 * 12 11 10 40 40 H 1.08995 * 109.38894 * 222.25486 * 15 13 12 41 41 H 1.09000 * 109.41669 * 102.51120 * 15 13 12 42 42 H 0.96996 * 119.99986 * 95.00778 * 16 2 1 43 43 H 1.09000 * 109.47247 * 60.00371 * 19 17 16 44 44 H 1.09001 * 109.47358 * 299.99798 * 19 17 16 45 45 H 0.96996 * 120.00393 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5002 -0.8263 -1.1905 6 6 4.1732 -1.4290 -2.1905 7 8 3.5702 -1.8840 -3.1393 8 6 5.6752 -1.5366 -2.1304 9 1 6.1126 -0.5396 -2.0762 10 6 6.1915 -2.2590 -3.3806 11 6 7.7194 -2.1958 -3.3867 12 7 8.2534 -2.6408 -2.1056 13 6 7.5439 -2.6948 -0.9778 14 8 8.1069 -3.0427 0.0385 15 6 6.0848 -2.3480 -0.8989 16 7 2.0184 -0.6905 1.1962 17 6 2.1471 -0.0181 2.3572 18 8 1.8581 1.1586 2.4117 19 6 2.6499 -0.7283 3.5875 20 16 2.7099 0.4347 4.9732 21 6 3.3147 -0.6301 6.2403 22 1 3.5247 -1.6663 6.0201 23 6 3.5200 -0.1372 7.5214 24 7 3.2635 1.1256 7.7898 25 14 4.1618 -1.2659 8.8645 26 1 5.4893 -1.8012 8.4689 27 1 4.2928 -0.5028 10.1317 28 1 3.2128 -2.3911 9.0608 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6056 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1370 34 1 3.9826 -0.4620 -0.4317 35 1 5.8686 -3.2999 -3.3610 36 1 5.8017 -1.7694 -4.2731 37 1 8.1033 -2.8377 -4.1796 38 1 8.0368 -1.1698 -3.5725 39 1 9.1834 -2.9144 -2.0711 40 1 5.9008 -1.7597 0.0000 41 1 5.4963 -3.2645 -0.8570 42 1 2.2492 -1.6316 1.1527 43 1 3.6493 -1.1200 3.3980 44 1 1.9778 -1.5506 3.8327 45 1 3.4074 1.4701 8.6851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284227786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:10 Heat of formation + Delta-G solvation = -125.080900 kcal Electronic energy + Delta-G solvation = -27390.262603 eV Core-core repulsion = 23340.225721 eV Total energy + Delta-G solvation = -4050.036881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09434 -39.93336 -39.27627 -36.85858 -36.30835 -34.13627 -33.44010 -32.43926 -31.50115 -30.10133 -28.65095 -27.16874 -25.50048 -25.29722 -23.44656 -21.87652 -20.72540 -20.43276 -19.67585 -18.15111 -17.81992 -17.31180 -16.89238 -16.66607 -16.39563 -15.91961 -15.59560 -15.33071 -14.98367 -14.80841 -14.72132 -14.45589 -14.16159 -13.92815 -13.83063 -13.36903 -13.20919 -13.00495 -12.76280 -12.59568 -12.35596 -12.20501 -12.11832 -11.90786 -11.61338 -11.58513 -11.22082 -11.05686 -11.03574 -10.77130 -10.64043 -9.93768 -9.84151 -9.56145 -9.52031 -9.42356 -9.10702 -9.04445 -8.27430 -6.52406 -6.22753 -3.93834 2.17792 2.28490 2.67944 2.84748 2.95191 3.00195 3.24151 3.27594 3.30540 3.63879 3.94951 4.09354 4.14066 4.19709 4.24768 4.33739 4.64579 4.71739 4.79675 4.83813 5.01565 5.03782 5.09613 5.12803 5.14818 5.26590 5.28285 5.39360 5.40411 5.49923 5.60663 5.60938 5.83459 5.86682 5.94489 6.09997 6.12217 6.34160 6.50389 6.88707 7.06167 7.56788 7.59206 7.78303 7.82495 8.34141 8.50048 9.22910 10.84586 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.002757 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.894353 B =10153.452516 C =12675.823112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.112 3.888 5 N -0.726 5.726 6 C 0.521 3.479 7 O -0.537 6.537 8 C -0.113 4.113 9 H 0.108 0.892 10 C -0.117 4.117 11 C 0.109 3.891 12 N -0.722 5.722 13 C 0.523 3.477 14 O -0.547 6.547 15 C -0.128 4.128 16 N -0.738 5.738 17 C 0.534 3.466 18 O -0.513 6.513 19 C -0.155 4.155 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.406 0.594 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 -6.711 -26.292 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.379 5.379 6 C 0.307 3.693 7 O -0.413 6.413 8 C -0.135 4.135 9 H 0.126 0.874 10 C -0.155 4.155 11 C -0.015 4.015 12 N -0.375 5.375 13 C 0.309 3.691 14 O -0.425 6.425 15 C -0.168 4.168 16 N -0.394 5.394 17 C 0.320 3.680 18 O -0.387 6.387 19 C -0.306 4.306 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.242 0.758 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.041 -5.011 -26.221 26.868 hybrid contribution 1.342 -2.406 1.099 2.966 sum 4.383 -7.417 -25.123 26.559 Atomic orbital electron populations 1.22117 0.94119 1.02563 1.03236 1.21141 0.95089 0.97892 0.83273 0.88653 1.21740 0.79735 1.01683 0.98020 1.46050 1.07980 1.59808 1.24053 1.20377 0.89339 0.77426 0.82143 1.90722 1.70064 1.47469 1.33086 1.21484 0.92947 1.02109 0.96919 0.87395 1.21726 0.93544 1.02411 0.97796 1.21438 0.94375 1.00592 0.85104 1.45498 1.15288 1.67727 1.09023 1.19949 0.89310 0.76971 0.82841 1.90831 1.70646 1.47613 1.33379 1.21677 0.93270 1.02844 0.99041 1.46164 1.69670 1.14039 1.09505 1.20353 0.76749 0.87220 0.83688 1.90713 1.47993 1.15745 1.84259 1.23548 1.03720 1.04957 0.98358 1.85375 1.86279 1.12808 0.98783 1.22823 1.51091 0.98178 0.96361 0.90946 1.24981 0.95027 0.95536 0.97950 1.69997 1.45460 1.13238 1.21641 0.86234 0.79410 0.80017 0.79925 1.19848 1.20814 1.19934 0.92187 0.91003 0.91519 0.90653 0.89872 0.75818 0.90081 0.88586 0.89953 0.91263 0.76350 0.87181 0.87474 0.76734 0.89155 0.89195 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.13 1.24 2.73 -67.93 -0.19 1.05 16 3 H 0.10 1.05 7.58 -51.93 -0.39 0.66 16 4 C 0.11 0.86 5.23 -4.04 -0.02 0.83 16 5 N -0.73 -5.36 5.30 -60.29 -0.32 -5.68 16 6 C 0.52 4.25 7.13 -10.99 -0.08 4.17 16 7 O -0.54 -6.09 15.90 5.56 0.09 -6.01 16 8 C -0.11 -0.67 2.60 -91.56 -0.24 -0.91 16 9 H 0.11 0.52 8.13 -51.93 -0.42 0.10 16 10 C -0.12 -0.59 4.70 -26.59 -0.13 -0.71 16 11 C 0.11 0.40 7.17 -4.49 -0.03 0.37 16 12 N -0.72 -4.59 5.45 -61.39 -0.33 -4.92 16 13 C 0.52 4.99 7.71 -11.87 -0.09 4.90 16 14 O -0.55 -7.96 17.78 5.55 0.10 -7.86 16 15 C -0.13 -0.93 5.21 -28.10 -0.15 -1.07 16 16 N -0.74 -8.14 4.52 -53.81 -0.24 -8.39 16 17 C 0.53 8.88 7.81 -10.99 -0.09 8.79 16 18 O -0.51 -10.60 15.52 5.56 0.09 -10.52 16 19 C -0.16 -2.94 6.16 36.01 0.22 -2.72 16 20 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 21 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 25 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.41 2.84 7.91 -40.82 -0.32 2.51 16 35 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.10 0.48 7.90 -51.93 -0.41 0.07 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.40 2.26 8.80 -40.82 -0.36 1.91 16 40 H 0.11 0.79 7.98 -51.93 -0.41 0.38 16 41 H 0.11 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.40 3.50 8.60 -40.82 -0.35 3.15 16 43 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 44 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -38.15 392.59 -8.31 -46.46 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.86 Total: 2.88 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.23 Total: 0.77 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.16 Total: -44.26 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.27 Total: -24.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.15 -8.31 -46.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284227786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.623 kcal (2) G-P(sol) polarization free energy of solvation -38.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds