Wall clock time and date at job start Wed Apr 1 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 C 1.52995 * 109.47548 * 240.00082 * 2 1 3 5 5 N 1.46506 * 109.47313 * 184.99857 * 4 2 1 6 6 C 1.34769 * 120.00029 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00031 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.67361 * 300.49870 * 8 6 5 10 10 C 1.53348 * 109.67737 * 180.02562 * 8 6 5 11 11 C 1.52919 * 108.67637 * 172.73204 * 10 8 6 12 12 N 1.45754 * 110.48263 * 50.75682 * 11 10 8 13 13 C 1.33349 * 124.11059 * 340.89551 * 12 11 10 14 14 O 1.21284 * 118.25017 * 182.26867 * 13 12 11 15 15 C 1.50182 * 123.50586 * 2.27445 * 13 12 11 16 16 N 1.46500 * 109.47146 * 119.99512 * 2 1 3 17 17 C 1.34779 * 120.00169 * 275.00181 * 16 2 1 18 18 O 1.21282 * 119.99922 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00037 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.46881 * 180.02562 * 19 17 16 21 21 C 1.76206 * 99.99929 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99720 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99847 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00398 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99778 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47367 * 59.99618 * 25 23 21 27 27 H 1.48498 * 109.47311 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46831 * 299.99623 * 25 23 21 29 29 H 1.09006 * 109.46479 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47133 * 300.00242 * 1 2 3 31 31 H 1.09001 * 109.46947 * 60.00474 * 1 2 3 32 32 H 1.09003 * 109.47048 * 304.99616 * 4 2 1 33 33 H 1.09000 * 109.47483 * 64.99501 * 4 2 1 34 34 H 0.97006 * 119.99717 * 359.97438 * 5 4 2 35 35 H 1.08996 * 109.60191 * 292.49203 * 10 8 6 36 36 H 1.09006 * 109.60268 * 52.97719 * 10 8 6 37 37 H 1.09000 * 109.29521 * 171.06250 * 11 10 8 38 38 H 1.08990 * 109.30162 * 290.44366 * 11 10 8 39 39 H 0.97005 * 117.94165 * 160.92888 * 12 11 10 40 40 H 1.08995 * 109.38894 * 222.25486 * 15 13 12 41 41 H 1.09000 * 109.41669 * 102.51120 * 15 13 12 42 42 H 0.96996 * 119.99986 * 95.00778 * 16 2 1 43 43 H 1.09000 * 109.47247 * 60.00371 * 19 17 16 44 44 H 1.09001 * 109.47358 * 299.99798 * 19 17 16 45 45 H 0.96996 * 120.00393 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5002 -0.8263 -1.1905 6 6 4.1732 -1.4290 -2.1905 7 8 3.5702 -1.8840 -3.1393 8 6 5.6752 -1.5366 -2.1304 9 1 6.1126 -0.5396 -2.0762 10 6 6.1915 -2.2590 -3.3806 11 6 7.7194 -2.1958 -3.3867 12 7 8.2534 -2.6408 -2.1056 13 6 7.5439 -2.6948 -0.9778 14 8 8.1069 -3.0427 0.0385 15 6 6.0848 -2.3480 -0.8989 16 7 2.0184 -0.6905 1.1962 17 6 2.1471 -0.0181 2.3572 18 8 1.8581 1.1586 2.4117 19 6 2.6499 -0.7283 3.5875 20 16 2.7099 0.4347 4.9732 21 6 3.3147 -0.6301 6.2403 22 1 3.5247 -1.6663 6.0201 23 6 3.5200 -0.1372 7.5214 24 7 3.2635 1.1256 7.7898 25 14 4.1618 -1.2659 8.8645 26 1 5.4893 -1.8012 8.4689 27 1 4.2928 -0.5028 10.1317 28 1 3.2128 -2.3911 9.0608 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6056 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1370 34 1 3.9826 -0.4620 -0.4317 35 1 5.8686 -3.2999 -3.3610 36 1 5.8017 -1.7694 -4.2731 37 1 8.1033 -2.8377 -4.1796 38 1 8.0368 -1.1698 -3.5725 39 1 9.1834 -2.9144 -2.0711 40 1 5.9008 -1.7597 0.0000 41 1 5.4963 -3.2645 -0.8570 42 1 2.2492 -1.6316 1.1527 43 1 3.6493 -1.1200 3.3980 44 1 1.9778 -1.5506 3.8327 45 1 3.4074 1.4701 8.6851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284227786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:09 Heat of formation + Delta-G solvation = -156.284886 kcal Electronic energy + Delta-G solvation = -27391.615709 eV Core-core repulsion = 23340.225721 eV Total energy + Delta-G solvation = -4051.389987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73916 -40.90332 -40.26449 -37.66752 -37.14400 -34.93275 -34.57798 -34.10327 -32.57906 -30.65153 -30.00747 -27.84389 -27.64521 -25.84848 -24.01087 -22.81740 -21.61089 -21.37428 -20.19051 -19.86424 -18.67491 -18.07031 -17.87071 -17.59290 -17.22218 -16.87259 -16.70788 -16.36364 -16.29976 -16.19031 -15.80246 -15.25297 -15.00743 -14.80366 -14.58612 -14.55427 -14.42281 -14.04296 -13.92004 -13.51942 -13.25170 -13.15835 -12.97732 -12.87183 -12.85781 -12.71067 -12.60396 -12.13569 -12.06841 -11.99586 -11.72954 -11.41540 -11.12688 -10.92947 -10.66548 -10.26652 -10.19452 -10.12788 -10.08032 -8.64460 -8.34363 -6.11248 1.27611 1.43331 1.46523 1.51821 1.56491 1.58343 1.62888 2.06317 2.26513 2.30810 2.32050 2.99893 3.32659 3.40803 3.57070 3.59736 3.68462 3.76923 3.99491 4.07125 4.17139 4.25418 4.26910 4.35022 4.41951 4.54224 4.59959 4.62733 4.70480 4.73587 4.76167 4.86649 5.01085 5.02089 5.19821 5.25460 5.39368 5.42504 5.49482 5.81110 6.20104 6.29464 6.42719 6.49125 7.07589 7.14534 7.16889 7.25329 8.74379 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.002757 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.894353 B =10153.452516 C =12675.823112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.081 0.919 4 C 0.122 3.878 5 N -0.723 5.723 6 C 0.525 3.475 7 O -0.567 6.567 8 C -0.105 4.105 9 H 0.124 0.876 10 C -0.115 4.115 11 C 0.109 3.891 12 N -0.712 5.712 13 C 0.518 3.482 14 O -0.607 6.607 15 C -0.123 4.123 16 N -0.710 5.710 17 C 0.540 3.460 18 O -0.558 6.558 19 C -0.133 4.133 20 S -0.146 6.146 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.994 3.006 26 H -0.264 1.264 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.410 0.590 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.405 0.595 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.414 0.586 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 -8.394 -28.226 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.099 0.901 4 C -0.002 4.002 5 N -0.375 5.375 6 C 0.312 3.688 7 O -0.446 6.446 8 C -0.126 4.126 9 H 0.142 0.858 10 C -0.153 4.153 11 C -0.014 4.014 12 N -0.362 5.362 13 C 0.306 3.694 14 O -0.490 6.490 15 C -0.163 4.163 16 N -0.365 5.365 17 C 0.326 3.674 18 O -0.436 6.436 19 C -0.284 4.284 20 S 0.081 5.919 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.816 3.184 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.246 0.754 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.241 0.759 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.251 0.749 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.535 -6.722 -28.239 29.242 hybrid contribution 1.152 -1.899 1.498 2.679 sum 4.687 -8.620 -26.741 28.484 Atomic orbital electron populations 1.22084 0.93540 1.03327 1.02783 1.21216 0.95471 0.97261 0.82930 0.90084 1.21652 0.79845 1.01875 0.96864 1.46056 1.07958 1.59443 1.24034 1.20635 0.89999 0.76629 0.81527 1.90716 1.70784 1.48849 1.34256 1.21471 0.91488 1.02897 0.96775 0.85776 1.21721 0.94386 1.01753 0.97405 1.21663 0.93423 1.02221 0.84091 1.45545 1.15376 1.66100 1.09213 1.20308 0.90084 0.76268 0.82729 1.90802 1.71899 1.50704 1.35584 1.21615 0.91878 1.03156 0.99679 1.45866 1.67803 1.14540 1.08324 1.19936 0.76579 0.86501 0.84398 1.90708 1.50292 1.17605 1.84979 1.23402 1.05549 1.03233 0.96260 1.85506 1.86594 1.17122 1.02707 1.23174 1.50845 0.98519 0.96967 0.90101 1.26066 0.95107 0.97124 1.00680 1.70159 1.46843 1.15387 1.22292 0.85070 0.79072 0.77879 0.76413 1.18850 1.20372 1.18707 0.90793 0.94083 0.89379 0.89848 0.89037 0.75445 0.90998 0.88057 0.87565 0.89379 0.75920 0.87233 0.87267 0.74882 0.87194 0.87553 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.48 71.98 0.68 -1.98 16 2 C 0.14 2.33 2.73 44.99 0.12 2.45 16 3 H 0.08 1.71 7.58 -2.39 -0.02 1.70 16 4 C 0.12 1.54 5.23 86.38 0.45 1.99 16 5 N -0.72 -9.02 5.30 -463.06 -2.46 -11.48 16 6 C 0.53 7.40 7.13 87.66 0.62 8.02 16 7 O -0.57 -11.67 15.90 -3.03 -0.05 -11.72 16 8 C -0.10 -1.02 2.60 -11.40 -0.03 -1.05 16 9 H 0.12 0.85 8.13 -2.39 -0.02 0.83 16 10 C -0.11 -0.88 4.70 30.68 0.14 -0.74 16 11 C 0.11 0.48 7.17 86.49 0.62 1.10 16 12 N -0.71 -7.85 5.45 -467.33 -2.55 -10.39 16 13 C 0.52 9.52 7.71 87.72 0.68 10.19 16 14 O -0.61 -17.93 17.78 -3.04 -0.05 -17.98 16 15 C -0.12 -1.62 5.21 29.71 0.15 -1.46 16 16 N -0.71 -14.42 4.52 -442.53 -2.00 -16.42 16 17 C 0.54 17.66 7.81 87.66 0.68 18.35 16 18 O -0.56 -23.48 15.52 -3.04 -0.05 -23.53 16 19 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 20 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 21 C -0.55 -31.02 9.50 67.95 0.65 -30.38 16 22 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 23 C 0.02 0.86 5.49 84.86 0.47 1.33 16 24 N -0.91 -55.72 13.22 21.65 0.29 -55.44 16 25 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.41 4.84 7.91 -92.70 -0.73 4.11 16 35 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 36 H 0.10 0.74 7.90 -2.38 -0.02 0.72 16 37 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.40 4.01 8.80 -92.70 -0.82 3.20 16 40 H 0.11 1.45 7.98 -2.39 -0.02 1.43 16 41 H 0.11 1.39 8.09 -2.39 -0.02 1.37 16 42 H 0.41 6.13 8.60 -92.71 -0.80 5.33 16 43 H 0.11 3.66 8.14 -2.39 -0.02 3.65 16 44 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -86.35 392.59 -1.62 -87.97 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -1.31 Total: 18.90 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.68 Total: 3.32 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -6.71 Total: -93.73 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.15 Total: -53.22 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -86.35 -1.62 -87.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284227786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.312 kcal (2) G-P(sol) polarization free energy of solvation -86.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds