Wall clock time and date at job start Wed Apr 1 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46576 * 2 1 4 4 C 1.52999 * 109.46917 * 119.99965 * 2 1 3 5 5 N 1.46507 * 109.47003 * 175.00593 * 4 2 1 6 6 C 1.34773 * 119.99962 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00150 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99664 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.67185 * 60.50108 * 8 6 5 10 10 C 1.53350 * 109.67354 * 181.03215 * 8 6 5 11 11 C 1.52930 * 108.66169 * 187.27997 * 10 8 6 12 12 N 1.45751 * 110.48155 * 309.21533 * 11 10 8 13 13 C 1.33356 * 124.10498 * 19.11370 * 12 11 10 14 14 O 1.21280 * 118.24417 * 177.72834 * 13 12 11 15 15 C 1.50169 * 123.50708 * 357.75695 * 13 12 11 16 16 N 1.46497 * 109.47218 * 239.99769 * 2 1 3 17 17 C 1.34780 * 119.99566 * 85.00262 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 2 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47282 * 59.99711 * 25 23 21 27 27 H 1.48497 * 109.47200 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47280 * 300.00084 * 25 23 21 29 29 H 1.09000 * 109.47614 * 299.99524 * 1 2 3 30 30 H 1.08998 * 109.47302 * 60.00130 * 1 2 3 31 31 H 1.09006 * 109.46570 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47222 * 294.99842 * 4 2 1 33 33 H 1.09000 * 109.47594 * 55.00418 * 4 2 1 34 34 H 0.97002 * 119.99894 * 359.97438 * 5 4 2 35 35 H 1.09004 * 109.59819 * 307.02057 * 10 8 6 36 36 H 1.09001 * 109.60308 * 67.50855 * 10 8 6 37 37 H 1.09005 * 109.29364 * 188.91230 * 11 10 8 38 38 H 1.09002 * 109.15393 * 69.42945 * 11 10 8 39 39 H 0.96998 * 117.94709 * 199.09183 * 12 11 10 40 40 H 1.08997 * 109.39995 * 257.44985 * 15 13 12 41 41 H 1.08998 * 109.40161 * 137.70904 * 15 13 12 42 42 H 0.96995 * 120.00423 * 264.99567 * 16 2 1 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 45 45 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1908 7 8 3.5699 -1.8841 3.1395 8 6 5.6749 -1.5375 2.1302 9 1 6.1136 -0.5404 2.0933 10 6 6.1890 -2.2831 3.3677 11 6 7.7170 -2.2216 3.3763 12 7 8.2517 -2.6446 2.0881 13 6 7.5431 -2.6779 0.9589 14 8 8.1067 -3.0084 -0.0629 15 6 6.0848 -2.3273 0.8847 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0182 -2.3571 18 8 1.8583 1.1584 -2.4117 19 6 2.6489 -0.7288 -3.5877 20 16 2.7093 0.4341 -4.9734 21 6 3.3111 -0.6314 -6.2410 22 1 3.5207 -1.6678 -6.0210 23 6 3.5170 -0.1385 -7.5222 24 7 3.2622 1.1247 -7.7902 25 14 4.1558 -1.2680 -8.8659 26 1 3.2044 -2.3912 -9.0622 27 1 4.2890 -0.5044 -10.1325 28 1 5.4823 -1.8062 -8.4711 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9824 -0.4626 0.4317 35 1 5.7989 -1.8090 4.2684 36 1 5.8647 -3.3230 3.3291 37 1 8.0995 -2.8779 4.1581 38 1 8.0327 -1.1982 3.5788 39 1 9.1813 -2.9189 2.0496 40 1 5.4950 -3.2420 0.8257 41 1 5.9025 -1.7226 -0.0037 42 1 2.2491 -1.6317 -1.1526 43 1 3.6481 -1.1213 -3.3985 44 1 1.9760 -1.5506 -3.8326 45 1 3.4057 1.4691 -8.6857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284227787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:12 Heat of formation + Delta-G solvation = -125.049348 kcal Electronic energy + Delta-G solvation = -27396.448917 eV Core-core repulsion = 23346.413404 eV Total energy + Delta-G solvation = -4050.035513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09550 -39.93318 -39.27643 -36.85818 -36.30895 -34.14079 -33.43749 -32.43842 -31.50047 -30.09928 -28.65007 -27.16560 -25.49902 -25.29857 -23.44395 -21.87618 -20.72625 -20.43290 -19.67710 -18.15141 -17.81984 -17.30833 -16.89519 -16.66572 -16.38898 -15.91944 -15.59757 -15.33473 -14.98338 -14.80780 -14.72251 -14.45693 -14.16052 -13.92815 -13.82864 -13.36832 -13.20854 -13.00443 -12.76247 -12.59534 -12.35413 -12.20591 -12.11789 -11.90724 -11.61376 -11.58370 -11.22078 -11.05611 -11.03509 -10.77100 -10.64077 -9.93725 -9.84118 -9.56121 -9.51981 -9.42333 -9.10667 -9.04398 -8.27354 -6.52358 -6.22746 -3.93729 2.17905 2.28489 2.68010 2.84818 2.95188 3.00282 3.24178 3.27644 3.30586 3.63941 3.94909 4.09266 4.14033 4.19784 4.24768 4.33753 4.64642 4.71798 4.79730 4.83856 5.01460 5.03785 5.09648 5.12846 5.14872 5.26543 5.28296 5.39456 5.40477 5.49967 5.60625 5.60971 5.83514 5.86723 5.94513 6.10067 6.12243 6.34298 6.50409 6.88763 7.06154 7.56813 7.59232 7.78286 7.82590 8.34142 8.50080 9.22928 10.84581 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.002762 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.533748 B =10136.671988 C =12660.157460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.112 3.888 5 N -0.727 5.727 6 C 0.521 3.479 7 O -0.537 6.537 8 C -0.113 4.113 9 H 0.108 0.892 10 C -0.117 4.117 11 C 0.109 3.891 12 N -0.722 5.722 13 C 0.523 3.477 14 O -0.547 6.547 15 C -0.128 4.128 16 N -0.738 5.738 17 C 0.534 3.466 18 O -0.513 6.513 19 C -0.155 4.155 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.406 0.594 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 -6.780 26.292 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.379 5.379 6 C 0.307 3.693 7 O -0.413 6.413 8 C -0.135 4.135 9 H 0.126 0.874 10 C -0.155 4.155 11 C -0.015 4.015 12 N -0.375 5.375 13 C 0.309 3.691 14 O -0.425 6.425 15 C -0.169 4.169 16 N -0.394 5.394 17 C 0.320 3.680 18 O -0.387 6.387 19 C -0.306 4.306 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.044 -5.070 26.220 26.878 hybrid contribution 1.339 -2.410 -1.101 2.969 sum 4.383 -7.480 25.119 26.573 Atomic orbital electron populations 1.22117 0.94119 1.02563 1.03236 1.21140 0.95089 0.97892 0.83275 0.88651 1.21742 0.79734 1.01681 0.98022 1.46052 1.07982 1.59835 1.24031 1.20377 0.89338 0.77420 0.82146 1.90721 1.70051 1.47471 1.33097 1.21485 0.92955 1.02144 0.96872 0.87376 1.21732 0.93574 1.02216 0.97975 1.21447 0.94368 1.00782 0.84912 1.45499 1.15338 1.68156 1.08553 1.19947 0.89301 0.76910 0.82915 1.90831 1.70581 1.47971 1.33070 1.21679 0.93293 1.03001 0.98887 1.46163 1.69672 1.14035 1.09509 1.20354 0.76744 0.87222 0.83690 1.90712 1.47982 1.15748 1.84263 1.23550 1.03726 1.04956 0.98355 1.85371 1.86376 1.12747 0.98738 1.22825 1.51149 0.98140 0.96352 0.90948 1.24984 0.95026 0.95536 0.97958 1.70003 1.45469 1.13223 1.21634 0.86231 0.79401 0.80017 0.79924 1.19930 1.20815 1.19856 0.91519 0.91003 0.92188 0.89872 0.90653 0.75820 0.88564 0.90099 0.89926 0.91262 0.76351 0.87475 0.87184 0.76733 0.89158 0.89193 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.13 1.24 2.73 -67.93 -0.19 1.05 16 3 H 0.10 1.05 7.58 -51.93 -0.39 0.66 16 4 C 0.11 0.86 5.23 -4.04 -0.02 0.83 16 5 N -0.73 -5.36 5.30 -60.29 -0.32 -5.68 16 6 C 0.52 4.25 7.14 -10.99 -0.08 4.17 16 7 O -0.54 -6.09 15.89 5.56 0.09 -6.00 16 8 C -0.11 -0.67 2.60 -91.56 -0.24 -0.91 16 9 H 0.11 0.52 8.13 -51.93 -0.42 0.10 16 10 C -0.12 -0.59 4.71 -26.59 -0.13 -0.72 16 11 C 0.11 0.40 7.17 -4.48 -0.03 0.37 16 12 N -0.72 -4.59 5.45 -61.38 -0.33 -4.93 16 13 C 0.52 5.00 7.71 -11.87 -0.09 4.91 16 14 O -0.55 -7.97 17.78 5.56 0.10 -7.87 16 15 C -0.13 -0.93 5.18 -28.11 -0.15 -1.07 16 16 N -0.74 -8.15 4.52 -53.81 -0.24 -8.39 16 17 C 0.53 8.88 7.81 -10.98 -0.09 8.80 16 18 O -0.51 -10.61 15.52 5.56 0.09 -10.52 16 19 C -0.16 -2.94 6.16 36.01 0.22 -2.72 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 22 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 25 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.41 2.84 7.83 -40.82 -0.32 2.52 16 35 H 0.10 0.48 7.89 -51.93 -0.41 0.07 16 36 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.40 2.27 8.80 -40.82 -0.36 1.91 16 40 H 0.11 0.75 8.09 -51.93 -0.42 0.33 16 41 H 0.11 0.79 7.92 -51.93 -0.41 0.38 16 42 H 0.40 3.50 8.60 -40.82 -0.35 3.15 16 43 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 44 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -38.16 392.41 -8.30 -46.46 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.86 Total: 2.89 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.23 Total: 0.76 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.16 Total: -44.27 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.27 Total: -24.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.16 -8.30 -46.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284227787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.587 kcal (2) G-P(sol) polarization free energy of solvation -38.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds