Wall clock time and date at job start Wed Apr 1 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46576 * 2 1 4 4 C 1.52999 * 109.46917 * 119.99965 * 2 1 3 5 5 N 1.46507 * 109.47003 * 175.00593 * 4 2 1 6 6 C 1.34773 * 119.99962 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00150 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99664 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.67185 * 60.50108 * 8 6 5 10 10 C 1.53350 * 109.67354 * 181.03215 * 8 6 5 11 11 C 1.52930 * 108.66169 * 187.27997 * 10 8 6 12 12 N 1.45751 * 110.48155 * 309.21533 * 11 10 8 13 13 C 1.33356 * 124.10498 * 19.11370 * 12 11 10 14 14 O 1.21280 * 118.24417 * 177.72834 * 13 12 11 15 15 C 1.50169 * 123.50708 * 357.75695 * 13 12 11 16 16 N 1.46497 * 109.47218 * 239.99769 * 2 1 3 17 17 C 1.34780 * 119.99566 * 85.00262 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 2 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47282 * 59.99711 * 25 23 21 27 27 H 1.48497 * 109.47200 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47280 * 300.00084 * 25 23 21 29 29 H 1.09000 * 109.47614 * 299.99524 * 1 2 3 30 30 H 1.08998 * 109.47302 * 60.00130 * 1 2 3 31 31 H 1.09006 * 109.46570 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47222 * 294.99842 * 4 2 1 33 33 H 1.09000 * 109.47594 * 55.00418 * 4 2 1 34 34 H 0.97002 * 119.99894 * 359.97438 * 5 4 2 35 35 H 1.09004 * 109.59819 * 307.02057 * 10 8 6 36 36 H 1.09001 * 109.60308 * 67.50855 * 10 8 6 37 37 H 1.09005 * 109.29364 * 188.91230 * 11 10 8 38 38 H 1.09002 * 109.15393 * 69.42945 * 11 10 8 39 39 H 0.96998 * 117.94709 * 199.09183 * 12 11 10 40 40 H 1.08997 * 109.39995 * 257.44985 * 15 13 12 41 41 H 1.08998 * 109.40161 * 137.70904 * 15 13 12 42 42 H 0.96995 * 120.00423 * 264.99567 * 16 2 1 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 45 45 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1908 7 8 3.5699 -1.8841 3.1395 8 6 5.6749 -1.5375 2.1302 9 1 6.1136 -0.5404 2.0933 10 6 6.1890 -2.2831 3.3677 11 6 7.7170 -2.2216 3.3763 12 7 8.2517 -2.6446 2.0881 13 6 7.5431 -2.6779 0.9589 14 8 8.1067 -3.0084 -0.0629 15 6 6.0848 -2.3273 0.8847 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0182 -2.3571 18 8 1.8583 1.1584 -2.4117 19 6 2.6489 -0.7288 -3.5877 20 16 2.7093 0.4341 -4.9734 21 6 3.3111 -0.6314 -6.2410 22 1 3.5207 -1.6678 -6.0210 23 6 3.5170 -0.1385 -7.5222 24 7 3.2622 1.1247 -7.7902 25 14 4.1558 -1.2680 -8.8659 26 1 3.2044 -2.3912 -9.0622 27 1 4.2890 -0.5044 -10.1325 28 1 5.4823 -1.8062 -8.4711 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9824 -0.4626 0.4317 35 1 5.7989 -1.8090 4.2684 36 1 5.8647 -3.3230 3.3291 37 1 8.0995 -2.8779 4.1581 38 1 8.0327 -1.1982 3.5788 39 1 9.1813 -2.9189 2.0496 40 1 5.4950 -3.2420 0.8257 41 1 5.9025 -1.7226 -0.0037 42 1 2.2491 -1.6317 -1.1526 43 1 3.6481 -1.1213 -3.3985 44 1 1.9760 -1.5506 -3.8326 45 1 3.4057 1.4691 -8.6857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284227787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:12 Heat of formation + Delta-G solvation = -156.257291 kcal Electronic energy + Delta-G solvation = -27397.802195 eV Core-core repulsion = 23346.413404 eV Total energy + Delta-G solvation = -4051.388791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74067 -40.90364 -40.26512 -37.66752 -37.14517 -34.93660 -34.57787 -34.10212 -32.57845 -30.65012 -30.00714 -27.84111 -27.64435 -25.85018 -24.00851 -22.81730 -21.61158 -21.37546 -20.19179 -19.86474 -18.67591 -18.06925 -17.86925 -17.59640 -17.21732 -16.87252 -16.70533 -16.36506 -16.30133 -16.19261 -15.80423 -15.25402 -15.00963 -14.80448 -14.58647 -14.55375 -14.42120 -14.04340 -13.91958 -13.51892 -13.25227 -13.15809 -12.97742 -12.87170 -12.85680 -12.70976 -12.60434 -12.13578 -12.06834 -11.99602 -11.72978 -11.41614 -11.12690 -10.92967 -10.66543 -10.26655 -10.19474 -10.12824 -10.08034 -8.64488 -8.34422 -6.11217 1.27613 1.43308 1.46520 1.51932 1.56481 1.58295 1.62864 2.06341 2.26532 2.30842 2.32031 2.99865 3.32665 3.40691 3.56899 3.59658 3.68487 3.76985 3.99470 4.07117 4.17131 4.25398 4.26890 4.34994 4.42026 4.54202 4.59948 4.62741 4.70520 4.73532 4.76142 4.86613 5.01198 5.02081 5.19764 5.25449 5.39356 5.42458 5.49450 5.81198 6.20031 6.29480 6.42657 6.49102 7.07538 7.14480 7.16939 7.25299 8.74311 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.002762 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.533748 B =10136.671988 C =12660.157460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.081 0.919 4 C 0.122 3.878 5 N -0.723 5.723 6 C 0.525 3.475 7 O -0.567 6.567 8 C -0.105 4.105 9 H 0.124 0.876 10 C -0.115 4.115 11 C 0.109 3.891 12 N -0.712 5.712 13 C 0.518 3.482 14 O -0.607 6.607 15 C -0.123 4.123 16 N -0.710 5.710 17 C 0.540 3.460 18 O -0.558 6.558 19 C -0.133 4.133 20 S -0.146 6.146 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.994 3.006 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.264 1.264 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.410 0.590 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.405 0.595 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.414 0.586 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -8.484 28.233 29.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.099 0.901 4 C -0.002 4.002 5 N -0.375 5.375 6 C 0.312 3.688 7 O -0.446 6.446 8 C -0.126 4.126 9 H 0.142 0.858 10 C -0.153 4.153 11 C -0.014 4.014 12 N -0.362 5.362 13 C 0.306 3.694 14 O -0.490 6.490 15 C -0.164 4.164 16 N -0.365 5.365 17 C 0.326 3.674 18 O -0.436 6.436 19 C -0.284 4.284 20 S 0.081 5.919 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.816 3.184 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.189 1.189 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.241 0.759 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.251 0.749 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.532 -6.802 28.244 29.266 hybrid contribution 1.151 -1.897 -1.502 2.679 sum 4.683 -8.699 26.742 28.509 Atomic orbital electron populations 1.22084 0.93538 1.03329 1.02783 1.21215 0.95473 0.97259 0.82932 0.90086 1.21653 0.79843 1.01876 0.96863 1.46058 1.07961 1.59471 1.24012 1.20636 0.89999 0.76624 0.81530 1.90715 1.70770 1.48850 1.34263 1.21472 0.91496 1.02958 0.96696 0.85764 1.21728 0.94417 1.01548 0.97593 1.21672 0.93413 1.02450 0.83857 1.45547 1.15425 1.66501 1.08769 1.20307 0.90075 0.76208 0.82801 1.90802 1.71838 1.51068 1.35276 1.21618 0.91900 1.03300 0.99539 1.45865 1.67804 1.14536 1.08328 1.19936 0.76574 0.86503 0.84399 1.90708 1.50281 1.17607 1.84984 1.23403 1.05553 1.03232 0.96259 1.85502 1.86690 1.17061 1.02661 1.23175 1.50906 0.98481 0.96959 0.90105 1.26069 0.95099 0.97128 1.00691 1.70164 1.46849 1.15372 1.22285 0.85068 0.79069 0.77877 0.76409 1.18694 1.20369 1.18867 0.89378 0.94084 0.90793 0.89038 0.89842 0.75451 0.88048 0.91002 0.87535 0.89384 0.75922 0.87255 0.87241 0.74880 0.87202 0.87550 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.48 71.98 0.68 -1.98 16 2 C 0.14 2.33 2.73 44.99 0.12 2.45 16 3 H 0.08 1.71 7.58 -2.39 -0.02 1.70 16 4 C 0.12 1.54 5.23 86.38 0.45 1.99 16 5 N -0.72 -9.04 5.30 -463.05 -2.45 -11.49 16 6 C 0.53 7.40 7.14 87.66 0.63 8.03 16 7 O -0.57 -11.66 15.89 -3.02 -0.05 -11.71 16 8 C -0.10 -1.02 2.60 -11.40 -0.03 -1.05 16 9 H 0.12 0.85 8.13 -2.39 -0.02 0.83 16 10 C -0.11 -0.88 4.71 30.69 0.14 -0.74 16 11 C 0.11 0.48 7.17 86.50 0.62 1.10 16 12 N -0.71 -7.85 5.45 -467.30 -2.55 -10.39 16 13 C 0.52 9.52 7.71 87.71 0.68 10.20 16 14 O -0.61 -17.95 17.78 -3.03 -0.05 -18.00 16 15 C -0.12 -1.62 5.18 29.70 0.15 -1.47 16 16 N -0.71 -14.43 4.52 -442.54 -2.00 -16.43 16 17 C 0.54 17.67 7.81 87.66 0.68 18.36 16 18 O -0.56 -23.49 15.52 -3.03 -0.05 -23.53 16 19 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 20 S -0.15 -7.91 20.57 -56.49 -1.16 -9.07 16 21 C -0.55 -31.04 9.50 67.96 0.65 -30.40 16 22 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 23 C 0.02 0.86 5.49 84.86 0.47 1.32 16 24 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 25 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.41 4.85 7.83 -92.71 -0.73 4.13 16 35 H 0.10 0.74 7.89 -2.38 -0.02 0.72 16 36 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 37 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.40 4.02 8.80 -92.71 -0.82 3.20 16 40 H 0.11 1.39 8.09 -2.39 -0.02 1.37 16 41 H 0.11 1.45 7.92 -2.39 -0.02 1.43 16 42 H 0.41 6.13 8.60 -92.71 -0.80 5.33 16 43 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 44 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 45 H 0.27 15.46 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -86.38 392.41 -1.61 -87.99 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -1.30 Total: 18.93 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.68 Total: 3.30 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -6.71 Total: -93.76 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.15 Total: -53.25 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -86.38 -1.61 -87.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284227787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.268 kcal (2) G-P(sol) polarization free energy of solvation -86.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds