Wall clock time and date at job start Wed Apr 1 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46781 * 2 1 4 4 C 1.53001 * 109.47028 * 240.00134 * 2 1 3 5 5 N 1.46494 * 109.47152 * 184.99606 * 4 2 1 6 6 C 1.34772 * 120.00341 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00002 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00299 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.67489 * 60.49549 * 8 6 5 10 10 C 1.53344 * 109.67341 * 181.03087 * 8 6 5 11 11 C 1.52936 * 108.66398 * 187.27298 * 10 8 6 12 12 N 1.45755 * 110.48221 * 309.22016 * 11 10 8 13 13 C 1.33363 * 124.10413 * 19.10825 * 12 11 10 14 14 O 1.21277 * 118.24353 * 177.73303 * 13 12 11 15 15 C 1.50176 * 123.50657 * 357.75598 * 13 12 11 16 16 N 1.46495 * 109.47255 * 119.99738 * 2 1 3 17 17 C 1.34779 * 120.00299 * 275.00141 * 16 2 1 18 18 O 1.21283 * 119.99753 * 359.97438 * 17 16 2 19 19 C 1.50701 * 119.99843 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.46896 * 179.97438 * 19 17 16 21 21 C 1.76192 * 100.00053 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00436 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99929 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99752 * 179.72153 * 23 21 20 26 26 H 1.48497 * 109.47323 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46790 * 120.00306 * 25 23 21 28 28 H 1.48501 * 109.47364 * 240.00335 * 25 23 21 29 29 H 1.08998 * 109.46350 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46775 * 299.99751 * 1 2 3 31 31 H 1.08995 * 109.47007 * 59.99701 * 1 2 3 32 32 H 1.08995 * 109.46903 * 304.99445 * 4 2 1 33 33 H 1.09007 * 109.46992 * 64.99651 * 4 2 1 34 34 H 0.97006 * 120.00180 * 0.02562 * 5 4 2 35 35 H 1.08996 * 109.60634 * 307.02135 * 10 8 6 36 36 H 1.09002 * 109.60655 * 67.50855 * 10 8 6 37 37 H 1.08992 * 109.29519 * 188.91648 * 11 10 8 38 38 H 1.09005 * 109.14966 * 69.42702 * 11 10 8 39 39 H 0.96994 * 117.95165 * 199.08465 * 12 11 10 40 40 H 1.08999 * 109.40066 * 257.45392 * 15 13 12 41 41 H 1.09004 * 109.39808 * 137.71387 * 15 13 12 42 42 H 0.97004 * 119.99811 * 95.00687 * 16 2 1 43 43 H 1.08998 * 109.46989 * 60.00366 * 19 17 16 44 44 H 1.08996 * 109.47123 * 299.99392 * 19 17 16 45 45 H 0.97000 * 120.00481 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1731 -1.4281 -2.1912 7 8 3.5700 -1.8832 -3.1400 8 6 5.6750 -1.5367 -2.1307 9 1 5.9664 -2.1074 -1.2490 10 6 6.1934 -2.2355 -3.3934 11 6 7.6912 -2.4968 -3.2282 12 7 8.3802 -1.2774 -2.8250 13 6 7.7741 -0.2202 -2.2833 14 8 8.4575 0.7242 -1.9486 15 6 6.2906 -0.1368 -2.0651 16 7 2.0184 -0.6905 1.1961 17 6 2.1472 -0.0182 2.3571 18 8 1.8591 1.1587 2.4115 19 6 2.6501 -0.7285 3.5874 20 16 2.7115 0.4347 4.9728 21 6 3.3146 -0.6305 6.2402 22 1 3.5240 -1.6669 6.0202 23 6 3.5215 -0.1373 7.5210 24 7 3.2668 1.1259 7.7891 25 14 4.1534 -1.2686 8.8666 26 1 4.3539 -2.6320 8.3134 27 1 5.4454 -0.7496 9.3833 28 1 3.1640 -1.3233 9.9726 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6055 -1.7198 -1.2951 33 1 1.7516 -0.1583 -2.1370 34 1 3.9824 -0.4627 -0.4317 35 1 5.6698 -3.1818 -3.5288 36 1 6.0270 -1.5956 -4.2600 37 1 8.1023 -2.8466 -4.1750 38 1 7.8387 -3.2625 -2.4665 39 1 9.3399 -1.2320 -2.9587 40 1 5.8458 0.4909 -2.8373 41 1 6.0926 0.3004 -1.0864 42 1 2.2492 -1.6317 1.1526 43 1 3.6494 -1.1202 3.3978 44 1 1.9779 -1.5507 3.8325 45 1 3.4110 1.4705 8.6843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284227789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:18 Heat of formation + Delta-G solvation = -125.512921 kcal Electronic energy + Delta-G solvation = -27243.126618 eV Core-core repulsion = 23193.071003 eV Total energy + Delta-G solvation = -4050.055615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10504 -39.94485 -39.28552 -36.87113 -36.31640 -34.14888 -33.44404 -32.46686 -31.51106 -30.11259 -28.67085 -27.17014 -25.53080 -25.30725 -23.45358 -21.88262 -20.73275 -20.44010 -19.68986 -18.17051 -17.83082 -17.33719 -16.92565 -16.65823 -16.34179 -15.93727 -15.70461 -15.30918 -14.99058 -14.83942 -14.70694 -14.41630 -14.23123 -13.97509 -13.85316 -13.36472 -13.18847 -13.00334 -12.79748 -12.61407 -12.36185 -12.22917 -12.11515 -11.92030 -11.62846 -11.58525 -11.22479 -11.09920 -11.06049 -10.78921 -10.65692 -9.95008 -9.84885 -9.56855 -9.53605 -9.42920 -9.13222 -9.07082 -8.28485 -6.54766 -6.25623 -3.96562 2.17403 2.26243 2.67620 2.83292 2.93816 2.98984 3.19052 3.25269 3.29343 3.62006 3.94057 4.08596 4.13212 4.16456 4.23797 4.33493 4.64645 4.71111 4.79223 4.83564 5.01442 5.02725 5.08501 5.10099 5.13737 5.25292 5.28088 5.38966 5.40613 5.49201 5.59423 5.60275 5.80506 5.86346 5.94350 6.06580 6.11909 6.32359 6.49553 6.86917 7.06011 7.55257 7.57065 7.78075 7.80054 8.31383 8.49117 9.20048 10.81806 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.002518 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.332034 B =11118.375023 C =12987.983128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.726 5.726 6 C 0.521 3.479 7 O -0.537 6.537 8 C -0.113 4.113 9 H 0.109 0.891 10 C -0.117 4.117 11 C 0.109 3.891 12 N -0.722 5.722 13 C 0.524 3.476 14 O -0.550 6.550 15 C -0.128 4.128 16 N -0.738 5.738 17 C 0.533 3.467 18 O -0.513 6.513 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.406 0.594 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -10.021 -24.568 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.379 5.379 6 C 0.307 3.693 7 O -0.413 6.413 8 C -0.135 4.135 9 H 0.127 0.873 10 C -0.155 4.155 11 C -0.016 4.016 12 N -0.375 5.375 13 C 0.310 3.690 14 O -0.427 6.427 15 C -0.168 4.168 16 N -0.394 5.394 17 C 0.319 3.681 18 O -0.386 6.386 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.242 0.758 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.758 -7.739 -24.814 26.139 hybrid contribution 1.326 -2.474 1.160 3.037 sum 4.083 -10.213 -23.655 26.087 Atomic orbital electron populations 1.22117 0.94112 1.02544 1.03256 1.21149 0.95093 0.97930 0.83256 0.88609 1.21738 0.79733 1.01665 0.98032 1.46048 1.07973 1.59856 1.24015 1.20375 0.89312 0.77463 0.82131 1.90722 1.70096 1.47459 1.33061 1.21487 0.92220 0.97888 1.01887 0.87286 1.21731 0.93906 1.02998 0.96853 1.21457 0.92743 0.86354 1.00995 1.45497 1.12211 1.16197 1.63553 1.19946 0.90562 0.81987 0.76486 1.90814 1.65107 1.36225 1.50595 1.21677 0.91917 0.96986 1.06256 1.46159 1.69683 1.14013 1.09512 1.20350 0.76803 0.87239 0.83690 1.90718 1.47939 1.15708 1.84241 1.23539 1.03618 1.04947 0.98403 1.85419 1.86334 1.12708 0.98793 1.22892 1.50989 0.98141 0.96378 0.90897 1.24996 0.95067 0.95537 0.97985 1.70018 1.45459 1.13223 1.21510 0.86119 0.78532 0.80118 0.80732 1.19626 1.20540 1.20552 0.92199 0.91006 0.91500 0.90656 0.89866 0.75816 0.88521 0.90129 0.89900 0.91180 0.76341 0.87523 0.87226 0.76769 0.89266 0.89220 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.13 16 2 C 0.13 1.24 2.73 -67.93 -0.19 1.05 16 3 H 0.10 1.07 7.58 -51.92 -0.39 0.68 16 4 C 0.11 0.86 5.23 -4.04 -0.02 0.84 16 5 N -0.73 -5.36 5.30 -60.30 -0.32 -5.68 16 6 C 0.52 4.25 7.14 -10.99 -0.08 4.17 16 7 O -0.54 -6.09 15.89 5.56 0.09 -6.00 16 8 C -0.11 -0.67 2.60 -91.56 -0.24 -0.91 16 9 H 0.11 0.53 8.13 -51.93 -0.42 0.11 16 10 C -0.12 -0.59 4.71 -26.59 -0.13 -0.71 16 11 C 0.11 0.40 7.17 -4.48 -0.03 0.37 16 12 N -0.72 -4.50 5.45 -61.38 -0.33 -4.83 16 13 C 0.52 4.88 7.71 -11.87 -0.09 4.79 16 14 O -0.55 -7.76 17.78 5.56 0.10 -7.66 16 15 C -0.13 -0.91 5.18 -28.10 -0.15 -1.06 16 16 N -0.74 -8.05 4.52 -53.80 -0.24 -8.29 16 17 C 0.53 8.79 7.81 -10.98 -0.09 8.71 16 18 O -0.51 -10.58 15.52 5.55 0.09 -10.49 16 19 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 20 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 25 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 2.84 7.83 -40.82 -0.32 2.52 16 35 H 0.10 0.49 7.89 -51.93 -0.41 0.08 16 36 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.40 2.20 8.80 -40.82 -0.36 1.85 16 40 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.11 0.78 7.92 -51.93 -0.41 0.37 16 42 H 0.40 3.40 8.60 -40.82 -0.35 3.05 16 43 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 44 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -37.87 392.41 -8.30 -46.17 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.86 Total: 2.78 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.23 Total: 0.83 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.16 Total: -43.83 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.27 Total: -24.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.87 -8.30 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284227789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.339 kcal (2) G-P(sol) polarization free energy of solvation -37.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds