Wall clock time and date at job start Wed Apr 1 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46781 * 2 1 4 4 C 1.53001 * 109.47028 * 240.00134 * 2 1 3 5 5 N 1.46494 * 109.47152 * 184.99606 * 4 2 1 6 6 C 1.34772 * 120.00341 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00002 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00299 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.67489 * 60.49549 * 8 6 5 10 10 C 1.53344 * 109.67341 * 181.03087 * 8 6 5 11 11 C 1.52936 * 108.66398 * 187.27298 * 10 8 6 12 12 N 1.45755 * 110.48221 * 309.22016 * 11 10 8 13 13 C 1.33363 * 124.10413 * 19.10825 * 12 11 10 14 14 O 1.21277 * 118.24353 * 177.73303 * 13 12 11 15 15 C 1.50176 * 123.50657 * 357.75598 * 13 12 11 16 16 N 1.46495 * 109.47255 * 119.99738 * 2 1 3 17 17 C 1.34779 * 120.00299 * 275.00141 * 16 2 1 18 18 O 1.21283 * 119.99753 * 359.97438 * 17 16 2 19 19 C 1.50701 * 119.99843 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.46896 * 179.97438 * 19 17 16 21 21 C 1.76192 * 100.00053 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00436 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99929 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99752 * 179.72153 * 23 21 20 26 26 H 1.48497 * 109.47323 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46790 * 120.00306 * 25 23 21 28 28 H 1.48501 * 109.47364 * 240.00335 * 25 23 21 29 29 H 1.08998 * 109.46350 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46775 * 299.99751 * 1 2 3 31 31 H 1.08995 * 109.47007 * 59.99701 * 1 2 3 32 32 H 1.08995 * 109.46903 * 304.99445 * 4 2 1 33 33 H 1.09007 * 109.46992 * 64.99651 * 4 2 1 34 34 H 0.97006 * 120.00180 * 0.02562 * 5 4 2 35 35 H 1.08996 * 109.60634 * 307.02135 * 10 8 6 36 36 H 1.09002 * 109.60655 * 67.50855 * 10 8 6 37 37 H 1.08992 * 109.29519 * 188.91648 * 11 10 8 38 38 H 1.09005 * 109.14966 * 69.42702 * 11 10 8 39 39 H 0.96994 * 117.95165 * 199.08465 * 12 11 10 40 40 H 1.08999 * 109.40066 * 257.45392 * 15 13 12 41 41 H 1.09004 * 109.39808 * 137.71387 * 15 13 12 42 42 H 0.97004 * 119.99811 * 95.00687 * 16 2 1 43 43 H 1.08998 * 109.46989 * 60.00366 * 19 17 16 44 44 H 1.08996 * 109.47123 * 299.99392 * 19 17 16 45 45 H 0.97000 * 120.00481 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1731 -1.4281 -2.1912 7 8 3.5700 -1.8832 -3.1400 8 6 5.6750 -1.5367 -2.1307 9 1 5.9664 -2.1074 -1.2490 10 6 6.1934 -2.2355 -3.3934 11 6 7.6912 -2.4968 -3.2282 12 7 8.3802 -1.2774 -2.8250 13 6 7.7741 -0.2202 -2.2833 14 8 8.4575 0.7242 -1.9486 15 6 6.2906 -0.1368 -2.0651 16 7 2.0184 -0.6905 1.1961 17 6 2.1472 -0.0182 2.3571 18 8 1.8591 1.1587 2.4115 19 6 2.6501 -0.7285 3.5874 20 16 2.7115 0.4347 4.9728 21 6 3.3146 -0.6305 6.2402 22 1 3.5240 -1.6669 6.0202 23 6 3.5215 -0.1373 7.5210 24 7 3.2668 1.1259 7.7891 25 14 4.1534 -1.2686 8.8666 26 1 4.3539 -2.6320 8.3134 27 1 5.4454 -0.7496 9.3833 28 1 3.1640 -1.3233 9.9726 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6055 -1.7198 -1.2951 33 1 1.7516 -0.1583 -2.1370 34 1 3.9824 -0.4627 -0.4317 35 1 5.6698 -3.1818 -3.5288 36 1 6.0270 -1.5956 -4.2600 37 1 8.1023 -2.8466 -4.1750 38 1 7.8387 -3.2625 -2.4665 39 1 9.3399 -1.2320 -2.9587 40 1 5.8458 0.4909 -2.8373 41 1 6.0926 0.3004 -1.0864 42 1 2.2492 -1.6317 1.1526 43 1 3.6494 -1.1202 3.3978 44 1 1.9779 -1.5507 3.8325 45 1 3.4110 1.4705 8.6843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284227789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:17 Heat of formation + Delta-G solvation = -156.478412 kcal Electronic energy + Delta-G solvation = -27244.469383 eV Core-core repulsion = 23193.071003 eV Total energy + Delta-G solvation = -4051.398379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74466 -40.90462 -40.26733 -37.67101 -37.14832 -34.94061 -34.57309 -34.10350 -32.58091 -30.65699 -30.00432 -27.84477 -27.64583 -25.85570 -24.01294 -22.81838 -21.61307 -21.37553 -20.20300 -19.86099 -18.68147 -18.04621 -17.91280 -17.63419 -17.09105 -16.87288 -16.76642 -16.40302 -16.34919 -16.15410 -15.80086 -15.17686 -14.99749 -14.88272 -14.65330 -14.52746 -14.42359 -14.04191 -13.87428 -13.52515 -13.26426 -13.14334 -12.97965 -12.91122 -12.86890 -12.70600 -12.56426 -12.14348 -12.06694 -12.00277 -11.69064 -11.42397 -11.15144 -10.92603 -10.67107 -10.24396 -10.18838 -10.13247 -10.08622 -8.64310 -8.34026 -6.10998 1.28390 1.41704 1.48246 1.51210 1.57102 1.58739 1.63582 2.06238 2.26729 2.30268 2.31999 3.00575 3.33476 3.40042 3.56668 3.59272 3.67901 3.76319 4.00165 4.07521 4.16266 4.24672 4.27186 4.35728 4.41387 4.54368 4.59465 4.62218 4.70071 4.73161 4.75964 4.86441 5.01312 5.02218 5.19689 5.25230 5.39110 5.43363 5.49580 5.80383 6.20912 6.28498 6.42581 6.50385 7.08021 7.14307 7.15630 7.26480 8.75201 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.002518 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.332034 B =11118.375023 C =12987.983128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 H 0.079 0.921 4 C 0.122 3.878 5 N -0.723 5.723 6 C 0.525 3.475 7 O -0.567 6.567 8 C -0.105 4.105 9 H 0.127 0.873 10 C -0.115 4.115 11 C 0.109 3.891 12 N -0.711 5.711 13 C 0.519 3.481 14 O -0.608 6.608 15 C -0.124 4.124 16 N -0.710 5.710 17 C 0.539 3.461 18 O -0.560 6.560 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.543 4.543 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.997 3.003 26 H -0.256 1.256 27 H -0.275 1.275 28 H -0.276 1.276 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.409 0.591 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.405 0.595 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.415 0.585 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -13.279 -25.752 29.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.097 0.903 4 C -0.002 4.002 5 N -0.375 5.375 6 C 0.312 3.688 7 O -0.446 6.446 8 C -0.126 4.126 9 H 0.144 0.856 10 C -0.153 4.153 11 C -0.014 4.014 12 N -0.362 5.362 13 C 0.307 3.693 14 O -0.490 6.490 15 C -0.164 4.164 16 N -0.365 5.365 17 C 0.324 3.676 18 O -0.437 6.437 19 C -0.282 4.282 20 S 0.076 5.924 21 C -0.691 4.691 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.201 1.201 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.245 0.755 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.241 0.759 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.252 0.748 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.195 -11.084 -26.052 28.492 hybrid contribution 1.143 -1.521 1.354 2.335 sum 4.338 -12.605 -24.698 28.066 Atomic orbital electron populations 1.22082 0.93524 1.03383 1.02725 1.21206 0.95484 0.97211 0.83026 0.90303 1.21646 0.79859 1.01940 0.96771 1.46055 1.07949 1.59459 1.24034 1.20639 0.89990 0.76687 0.81480 1.90716 1.70837 1.48891 1.34156 1.21478 0.90554 0.97332 1.03271 0.85554 1.21727 0.94792 1.02870 0.95890 1.21679 0.91652 0.85267 1.02821 1.45543 1.12657 1.16175 1.61794 1.20277 0.91156 0.81845 0.76015 1.90787 1.66346 1.38477 1.53434 1.21611 0.90662 0.97886 1.06202 1.45846 1.67804 1.14557 1.08250 1.19988 0.76595 0.86514 0.84465 1.90715 1.50319 1.17699 1.84996 1.23386 1.05637 1.03141 0.96060 1.85598 1.86694 1.17231 1.02921 1.23230 1.50595 0.98458 0.96842 0.89892 1.26108 0.95169 0.97137 1.00802 1.70182 1.46958 1.15478 1.22207 0.84932 0.77769 0.78339 0.77080 1.17912 1.20088 1.20104 0.90640 0.94107 0.89507 0.89595 0.89290 0.75452 0.87976 0.91069 0.87505 0.89345 0.75882 0.87504 0.87373 0.74771 0.86980 0.87432 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.48 71.98 0.68 -1.98 16 2 C 0.14 2.33 2.73 45.00 0.12 2.46 16 3 H 0.08 1.71 7.58 -2.38 -0.02 1.70 16 4 C 0.12 1.55 5.23 86.38 0.45 2.00 16 5 N -0.72 -9.05 5.30 -463.08 -2.45 -11.51 16 6 C 0.53 7.40 7.14 87.66 0.63 8.03 16 7 O -0.57 -11.67 15.89 -3.03 -0.05 -11.71 16 8 C -0.11 -1.02 2.60 -11.40 -0.03 -1.05 16 9 H 0.13 0.83 8.13 -2.39 -0.02 0.81 16 10 C -0.11 -0.87 4.71 30.69 0.14 -0.73 16 11 C 0.11 0.48 7.17 86.50 0.62 1.10 16 12 N -0.71 -7.71 5.45 -467.28 -2.55 -10.26 16 13 C 0.52 9.42 7.71 87.71 0.68 10.10 16 14 O -0.61 -17.61 17.78 -3.02 -0.05 -17.66 16 15 C -0.12 -1.64 5.18 29.71 0.15 -1.49 16 16 N -0.71 -14.06 4.52 -442.52 -2.00 -16.05 16 17 C 0.54 17.38 7.81 87.66 0.68 18.06 16 18 O -0.56 -23.59 15.52 -3.04 -0.05 -23.64 16 19 C -0.13 -4.73 6.16 71.24 0.44 -4.30 16 20 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 21 C -0.54 -30.19 9.50 67.96 0.65 -29.55 16 22 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 23 C 0.01 0.70 5.49 84.86 0.47 1.17 16 24 N -0.91 -55.38 13.22 21.65 0.29 -55.10 16 25 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 27 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.41 4.87 7.83 -92.70 -0.73 4.14 16 35 H 0.10 0.74 7.89 -2.39 -0.02 0.72 16 36 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 37 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 39 H 0.41 3.91 8.80 -92.71 -0.82 3.09 16 40 H 0.11 1.42 8.09 -2.39 -0.02 1.40 16 41 H 0.11 1.47 7.92 -2.39 -0.02 1.45 16 42 H 0.42 5.71 8.60 -92.71 -0.80 4.92 16 43 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 44 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 45 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -86.05 392.41 -1.61 -87.66 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -1.30 Total: 18.77 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.68 Total: 3.82 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -6.71 Total: -92.91 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.15 Total: -53.01 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -86.05 -1.61 -87.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284227789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.815 kcal (2) G-P(sol) polarization free energy of solvation -86.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds