Wall clock time and date at job start Wed Apr 1 2020 01:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 H 1.09001 * 110.21608 * 41.92994 * 9 7 6 11 11 C 1.54473 * 110.24910 * 279.99943 * 9 7 6 12 12 C 1.54624 * 101.76893 * 215.58636 * 11 9 7 13 13 C 1.51281 * 104.19414 * 24.79274 * 12 11 9 14 14 O 1.21280 * 124.94363 * 163.74947 * 13 12 11 15 15 N 1.34421 * 110.11459 * 343.75026 * 13 12 11 16 16 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 17 17 C 1.34776 * 120.00219 * 275.00364 * 16 2 1 18 18 O 1.21274 * 120.00173 * 359.97438 * 17 16 2 19 19 C 1.50705 * 119.99786 * 180.02562 * 17 16 2 20 20 S 1.80998 * 109.46806 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99961 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99633 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99960 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99694 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47098 * 89.99593 * 25 23 21 27 27 H 1.48502 * 109.46728 * 209.99471 * 25 23 21 28 28 H 1.48501 * 109.46881 * 329.99425 * 25 23 21 29 29 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 31 31 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 36 36 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 37 37 H 1.09005 * 110.96762 * 333.70611 * 11 9 7 38 38 H 1.08998 * 110.97086 * 97.46001 * 11 9 7 39 39 H 1.08993 * 110.49400 * 143.47278 * 12 11 9 40 40 H 1.09004 * 110.48447 * 266.11788 * 12 11 9 41 41 H 0.97008 * 124.34379 * 179.56455 * 15 13 12 42 42 H 0.97006 * 119.99491 * 95.00433 * 16 2 1 43 43 H 1.08995 * 109.47237 * 299.99994 * 19 17 16 44 44 H 1.08997 * 109.46884 * 59.99911 * 19 17 16 45 45 H 0.97000 * 120.00094 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 7 4.0531 -1.3033 -2.5100 7 6 5.3740 -1.3385 -2.7758 8 8 6.1582 -0.7986 -2.0247 9 6 5.8764 -2.0489 -4.0063 10 1 5.2307 -1.8309 -4.8570 11 6 5.9362 -3.5722 -3.7572 12 6 7.1956 -3.9737 -4.5594 13 6 8.0187 -2.7057 -4.6168 14 8 9.1948 -2.6535 -4.9084 15 7 7.2569 -1.6452 -4.2977 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8589 1.1586 2.4116 19 6 2.6499 -0.7285 3.5875 20 16 2.7098 0.4344 4.9733 21 6 3.3145 -0.6304 6.2403 22 1 3.5246 -1.6666 6.0201 23 6 3.5199 -0.1376 7.5215 24 7 3.2634 1.1251 7.7899 25 14 4.1603 -1.2667 8.8649 26 1 5.6447 -1.2264 8.8794 27 1 3.6399 -0.8155 10.1805 28 1 3.7054 -2.6558 8.6025 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 3.8532 0.4371 -1.3573 35 1 3.9994 -1.0726 -0.4259 36 1 3.4258 -1.7349 -3.1111 37 1 6.0637 -3.7893 -2.6966 38 1 5.0485 -4.0671 -4.1511 39 1 7.7433 -4.7608 -4.0413 40 1 6.9213 -4.2962 -5.5639 41 1 7.5785 -0.7306 -4.2639 42 1 2.2490 -1.6317 1.1527 43 1 1.9778 -1.5508 3.8326 44 1 3.6492 -1.1202 3.3979 45 1 3.4073 1.4696 8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284445375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:21 Heat of formation + Delta-G solvation = -119.884323 kcal Electronic energy + Delta-G solvation = -26552.533251 eV Core-core repulsion = 22502.721711 eV Total energy + Delta-G solvation = -4049.811541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27950 -39.73974 -39.31101 -36.93620 -36.44834 -34.84839 -32.43196 -32.03541 -31.79871 -30.11713 -28.61167 -28.17326 -25.48786 -24.19425 -22.90427 -21.72565 -21.10009 -20.83762 -20.38710 -18.37233 -17.86303 -17.75919 -16.66302 -16.49974 -16.35304 -15.98272 -15.63800 -15.20481 -14.90868 -14.80576 -14.51206 -14.23895 -14.13992 -13.86716 -13.82248 -13.58611 -13.28587 -13.26982 -12.97099 -12.67870 -12.55612 -12.21581 -11.99409 -11.87096 -11.76685 -11.62154 -11.16456 -11.05999 -11.02625 -10.76223 -10.56055 -10.34521 -9.81926 -9.62676 -9.57348 -9.42020 -9.07454 -8.96671 -8.24311 -6.50227 -6.21783 -3.92335 2.01641 2.07483 2.44755 2.95099 3.00548 3.06383 3.22640 3.27876 3.31524 3.68142 3.70812 3.74444 4.03046 4.20318 4.26687 4.33986 4.39821 4.56902 4.63830 4.73973 5.01824 5.11604 5.13114 5.13852 5.14917 5.23662 5.25765 5.27902 5.46947 5.53894 5.61155 5.65132 5.87285 5.88843 5.94162 6.10818 6.13281 6.20869 6.51066 6.59931 6.91607 7.59377 7.64251 7.65928 7.77229 8.35048 8.58088 9.23630 10.85639 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.002014 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.731686 B =13900.348334 C =15734.826141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.115 3.885 6 N -0.725 5.725 7 C 0.501 3.499 8 O -0.519 6.519 9 C 0.114 3.886 10 H 0.107 0.893 11 C -0.122 4.122 12 C -0.155 4.155 13 C 0.522 3.478 14 O -0.528 6.528 15 N -0.711 5.711 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.417 0.583 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -11.688 -29.360 31.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.008 4.008 6 N -0.378 5.378 7 C 0.284 3.716 8 O -0.394 6.394 9 C 0.004 3.996 10 H 0.125 0.875 11 C -0.160 4.160 12 C -0.195 4.195 13 C 0.308 3.692 14 O -0.404 6.404 15 N -0.367 5.367 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.257 0.743 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.716 -9.245 -28.730 30.302 hybrid contribution 0.508 -2.275 0.610 2.409 sum -2.208 -11.520 -28.120 30.468 Atomic orbital electron populations 1.22173 0.94958 1.02118 1.02881 1.20774 0.94209 0.97760 0.83199 0.89069 1.22105 0.94317 1.02150 0.98927 1.21476 0.93793 0.98124 0.87402 1.45958 1.07127 1.57207 1.27493 1.20707 0.82690 0.80840 0.87325 1.90818 1.55168 1.44505 1.48877 1.21588 0.85462 0.96100 0.96404 0.87546 1.22632 0.99431 0.91338 1.02645 1.22377 0.96417 0.97399 1.03323 1.20840 0.86524 0.86482 0.75309 1.90790 1.14801 1.86272 1.48536 1.45964 1.09753 1.10874 1.70117 1.46131 1.69582 1.13851 1.09578 1.20304 0.76704 0.87218 0.83761 1.90701 1.48165 1.15730 1.84359 1.23538 1.03650 1.04876 0.98433 1.85392 1.86209 1.12973 0.98767 1.22860 1.51003 0.98159 0.96341 0.90951 1.24993 0.95086 0.95556 0.97969 1.70011 1.45456 1.13246 1.21551 0.86169 0.79049 0.80164 0.80123 1.20251 1.20749 1.19713 0.92513 0.91405 0.91862 0.89670 0.90516 0.90893 0.90652 0.76443 0.89143 0.87948 0.87376 0.87210 0.74314 0.76945 0.89273 0.89258 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.15 0.35 -1.10 16 2 C 0.15 1.37 2.57 -67.93 -0.17 1.20 16 3 H 0.09 1.07 7.58 -51.92 -0.39 0.68 16 4 C -0.14 -0.70 4.87 -26.73 -0.13 -0.83 16 5 C 0.12 0.84 5.56 -4.04 -0.02 0.82 16 6 N -0.73 -3.50 5.56 -60.30 -0.33 -3.84 16 7 C 0.50 3.74 7.03 -10.98 -0.08 3.67 16 8 O -0.52 -6.78 16.54 5.56 0.09 -6.69 16 9 C 0.11 0.49 3.93 -68.17 -0.27 0.23 16 10 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 11 C -0.12 -0.32 6.67 -25.10 -0.17 -0.49 16 12 C -0.15 -0.66 6.86 -26.74 -0.18 -0.84 16 13 C 0.52 4.67 8.43 -10.86 -0.09 4.58 16 14 O -0.53 -7.21 18.03 5.56 0.10 -7.11 16 15 N -0.71 -5.29 5.46 -53.89 -0.29 -5.58 16 16 N -0.74 -8.58 4.53 -53.80 -0.24 -8.83 16 17 C 0.53 9.43 7.81 -10.98 -0.09 9.34 16 18 O -0.52 -11.23 15.52 5.56 0.09 -11.15 16 19 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 25 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.71 7.75 -51.93 -0.40 0.31 16 36 H 0.40 0.44 8.47 -40.82 -0.35 0.09 16 37 H 0.09 0.36 7.91 -51.93 -0.41 -0.05 16 38 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.42 3.33 8.94 -40.82 -0.36 2.96 16 42 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -40.92 397.74 -8.42 -49.34 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.89 Total: -0.06 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.43 Total: 0.78 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.14 Total: -43.73 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: 0.28 Total: -24.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -40.92 -8.42 -49.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284445375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.549 kcal (2) G-P(sol) polarization free energy of solvation -40.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds