Wall clock time and date at job start Wed Apr 1 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00513 * 2 1 4 4 N 1.34780 * 119.99858 * 179.97438 * 2 1 3 5 5 C 1.46505 * 120.00174 * 179.97438 * 4 2 1 6 6 C 1.50696 * 109.47075 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00282 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99763 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99952 * 179.97438 * 8 6 5 10 10 C 1.53773 * 113.61686 * 254.13880 * 9 8 6 11 11 C 1.54049 * 86.98868 * 270.83833 * 10 9 8 12 12 C 1.53002 * 113.62545 * 220.02302 * 11 10 9 13 13 N 1.46502 * 109.46813 * 272.49316 * 12 11 10 14 14 C 1.34780 * 119.99751 * 179.97438 * 13 12 11 15 15 O 1.21274 * 120.00113 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99768 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46879 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99909 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00009 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00327 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99716 * 359.97438 * 20 18 17 22 22 Si 1.86788 * 120.00396 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47266 * 60.00424 * 22 20 18 24 24 H 1.48505 * 109.47227 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47286 * 299.99912 * 22 20 18 26 26 C 1.53781 * 113.61361 * 156.53041 * 9 8 6 27 27 H 1.08994 * 109.47283 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46986 * 300.00754 * 1 2 3 29 29 H 1.09000 * 109.46556 * 60.00146 * 1 2 3 30 30 H 0.97001 * 119.99548 * 0.02562 * 4 2 1 31 31 H 1.09001 * 109.46824 * 60.00236 * 5 4 2 32 32 H 1.09002 * 109.46803 * 300.00785 * 5 4 2 33 33 H 0.96997 * 120.00341 * 359.97438 * 8 6 5 34 34 H 1.09002 * 112.84852 * 25.33640 * 9 8 6 35 35 H 1.09007 * 113.61678 * 25.42910 * 10 9 8 36 36 H 1.09000 * 113.61916 * 156.33583 * 10 9 8 37 37 H 1.09005 * 113.68989 * 89.12112 * 11 10 9 38 38 H 1.09005 * 109.46483 * 32.48989 * 12 11 10 39 39 H 1.08995 * 109.47301 * 152.49438 * 12 11 10 40 40 H 0.97002 * 119.99977 * 0.02562 * 13 12 11 41 41 H 1.09000 * 109.46977 * 300.00010 * 16 14 13 42 42 H 1.09004 * 109.47306 * 60.00591 * 16 14 13 43 43 H 0.97000 * 120.00504 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.61158 * 203.66864 * 26 9 8 45 45 H 1.08998 * 113.61196 * 334.56885 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0001 7 8 3.3600 -3.5100 0.0001 8 7 5.4732 -2.8344 0.0001 9 6 5.9615 -4.2157 0.0008 10 6 6.5299 -4.6675 1.3563 11 6 7.8905 -4.1305 0.8729 12 6 9.0734 -5.0204 1.2598 13 7 9.5555 -4.6407 2.5901 14 6 10.5983 -5.2935 3.1406 15 8 11.1379 -6.1947 2.5345 16 6 11.0938 -4.9033 4.5093 17 16 12.4933 -5.9560 4.9669 18 6 12.8602 -5.3012 6.5611 19 1 12.2729 -4.4866 6.9585 20 6 13.9040 -5.8322 7.3061 21 7 14.6195 -6.8253 6.8219 22 14 14.2934 -5.1376 8.9957 23 1 13.1090 -5.2898 9.8785 24 1 15.4443 -5.8723 9.5797 25 1 14.6370 -3.6982 8.8721 26 6 7.3853 -4.3660 -0.5603 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.6958 -2.0072 0.0005 31 1 4.0095 -0.6529 0.8895 32 1 4.0089 -0.6540 -0.8905 33 1 6.1035 -2.0972 -0.0003 34 1 5.2466 -4.9176 -0.4286 35 1 6.1201 -4.1209 2.2058 36 1 6.5127 -5.7480 1.4988 37 1 8.0559 -3.0796 1.1104 38 1 8.7549 -6.0628 1.2725 39 1 9.8758 -4.8944 0.5330 40 1 9.1236 -3.9201 3.0751 41 1 11.4124 -3.8610 4.4969 42 1 10.2911 -5.0294 5.2359 43 1 15.3492 -7.1963 7.3423 44 1 7.6015 -5.3642 -0.9410 45 1 7.6655 -3.5762 -1.2574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285166085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:14 Heat of formation + Delta-G solvation = -97.086508 kcal Electronic energy + Delta-G solvation = -25758.999814 eV Core-core repulsion = 21710.176861 eV Total energy + Delta-G solvation = -4048.822953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04146 -40.07644 -39.27611 -38.53359 -35.01935 -34.75626 -33.49337 -32.43796 -31.02586 -29.93884 -28.06663 -26.81121 -26.17858 -25.46636 -22.94464 -21.64225 -21.15016 -20.48736 -19.66246 -18.31503 -17.85341 -17.11298 -16.75264 -16.53609 -16.30089 -16.24442 -15.85440 -15.44792 -15.39213 -14.81413 -14.73254 -14.39946 -14.12666 -13.98046 -13.66475 -13.59774 -13.29004 -13.11415 -12.97995 -12.89701 -12.60206 -12.54797 -12.38865 -11.77620 -11.38788 -11.11917 -11.05567 -11.04732 -10.77778 -10.68131 -10.59148 -10.50168 -9.83513 -9.80031 -9.62197 -9.40854 -9.07347 -8.89655 -8.25360 -6.51258 -6.22499 -3.93355 1.90560 2.09853 2.18682 2.87559 3.01656 3.08415 3.22711 3.26801 3.30138 3.66946 3.93964 4.01222 4.16845 4.19725 4.31886 4.36035 4.40271 4.64936 4.67836 4.77100 4.89411 4.90752 5.08780 5.12576 5.21326 5.27049 5.28117 5.31154 5.34303 5.47878 5.58685 5.65061 5.70479 5.73423 5.85152 5.88128 6.07575 6.12248 6.60053 6.79994 6.91802 7.50349 7.58164 7.64204 7.68502 8.33949 8.59686 9.22658 10.84889 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.001488 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.569936 B =18815.563466 C =20044.321954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.720 5.720 5 C 0.097 3.903 6 C 0.513 3.487 7 O -0.535 6.535 8 N -0.706 5.706 9 C 0.118 3.882 10 C -0.145 4.145 11 C -0.124 4.124 12 C 0.131 3.869 13 N -0.738 5.738 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.134 4.134 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.413 0.587 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.405 0.595 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.102 0.898 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.482 11.813 -16.856 33.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.426 6.426 4 N -0.377 5.377 5 C -0.030 4.030 6 C 0.299 3.701 7 O -0.411 6.411 8 N -0.357 5.357 9 C 0.012 3.988 10 C -0.183 4.183 11 C -0.143 4.143 12 C 0.007 3.993 13 N -0.393 5.393 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.173 4.173 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.251 0.749 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.240 0.760 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.559 10.238 -17.857 32.816 hybrid contribution -0.360 1.789 2.087 2.773 sum -25.919 12.027 -15.769 32.636 Atomic orbital electron populations 1.21835 0.90948 1.04583 1.05570 1.20879 0.90868 0.82947 0.75227 1.90747 1.70737 1.31403 1.49718 1.45885 1.05824 1.10107 1.75844 1.21065 0.82800 0.94037 1.05134 1.20521 0.82763 0.91100 0.75747 1.90721 1.55087 1.45937 1.49405 1.45577 1.06650 1.08712 1.74809 1.21903 0.95937 0.83147 0.97778 1.23573 0.95194 1.02306 0.97264 1.22929 0.94351 1.00232 0.96756 1.21264 0.95161 0.98301 0.84575 1.45989 1.34957 1.39227 1.19118 1.20313 0.78961 0.81590 0.87463 1.90702 1.56220 1.29315 1.63003 1.23533 1.05488 1.05874 0.95545 1.85394 1.32586 1.44482 1.20903 1.22830 1.20301 1.22576 1.02808 0.90989 1.24984 0.95042 0.94777 0.98711 1.70007 1.19107 1.23376 1.37801 0.86226 0.78028 0.79021 0.82232 1.19944 1.20787 1.19948 1.23297 0.93895 1.03884 0.96187 0.90295 0.88434 0.88469 0.74864 0.88105 0.88171 0.75983 0.87665 0.90839 0.88510 0.88588 0.91385 0.91482 0.76916 0.89278 0.89271 0.92115 0.87961 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.39 36.00 0.37 -0.18 16 2 C 0.51 3.59 7.94 -10.99 -0.09 3.51 16 3 O -0.55 -6.12 17.10 5.56 0.10 -6.03 16 4 N -0.72 -4.24 5.53 -61.47 -0.34 -4.58 16 5 C 0.10 0.51 6.15 -5.19 -0.03 0.48 16 6 C 0.51 3.27 7.90 -10.99 -0.09 3.19 16 7 O -0.53 -5.21 15.29 5.55 0.08 -5.12 16 8 N -0.71 -3.27 5.26 -53.02 -0.28 -3.55 16 9 C 0.12 0.67 4.29 -67.12 -0.29 0.38 16 10 C -0.14 -0.93 7.45 -25.78 -0.19 -1.12 16 11 C -0.12 -0.75 3.65 -89.67 -0.33 -1.08 16 12 C 0.13 1.32 5.51 -4.04 -0.02 1.30 16 13 N -0.74 -9.09 5.56 -60.29 -0.33 -9.42 16 14 C 0.53 9.62 7.85 -10.98 -0.09 9.54 16 15 O -0.52 -11.58 15.86 5.56 0.09 -11.49 16 16 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.13 -0.65 7.38 -25.92 -0.19 -0.84 16 27 H 0.08 0.11 7.91 -51.93 -0.41 -0.30 16 28 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.41 2.15 7.27 -40.82 -0.30 1.85 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.41 0.93 8.70 -40.82 -0.36 0.58 16 34 H 0.11 0.75 7.50 -51.93 -0.39 0.36 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.10 0.68 7.90 -51.93 -0.41 0.27 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 3.74 8.47 -40.82 -0.35 3.40 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.10 0.50 8.10 -51.93 -0.42 0.08 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -39.00 400.18 -8.48 -47.48 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.81 Total: 0.18 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.52 Total: -0.60 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.22 Total: -42.90 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.27 Total: -22.64 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -39.00 -8.48 -47.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285166085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.605 kcal (2) G-P(sol) polarization free energy of solvation -38.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds